CsaV3_1G015180 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_1G015180
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionNDR1/HIN1-like protein 12
Locationchr1 : 10798345 .. 10799374 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCTCGTCAGTGCCACCAGCCGCAATCTCGACAACCATGCAAATCACCATCTCCTCCACAACCCCAACAACCGCATTGGTGTTTACTATCAGGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTTGTTTATTTTCAACTCTCTGACTCACAAGTTCTTTATCTTTCTTTACATACCTTTTTCATAGCTTAACTTCTCATTTTAAATTTTAATTCTATACACATATTTTGTTATTTTAAAGCATAAAGCACTTAGGCTTTTAATCCTGGTAATGGAAGGTTTGAATCCTTCGTATCCTATTGTTGTATTTTTTGAGTCAATTCAAATTATTAAAATTGGCGTTCCAAATACTTATGGGAGGATTTAAATCTTTCTAACCTGGTCAGATGACATAAAGTTGAACTTTCGTCAAGTTAACATAAGAAGAGAAATTCGAAGAAAAGAAAGAAGTTGCATCTCTTCTTTGTAATTTAATATTTATTGTAGACTTTATCGTCGTATTGCACAACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGCAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGA

mRNA sequence

ATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGCAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGA

Coding sequence (CDS)

ATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGCAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGA

Protein sequence

MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLLGLNVMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI
Homology
[Close]
BLAST of CsaV3_1G015180 vs. NCBI nr
Match: XP_004139592.1 (PREDICTED: protein YLS9-like [Cucumis sativus] >KGN64967.1 hypothetical protein Csa_1G169420 [Cucumis sativus])

HSP 1 Score: 307.8 bits (787), Expect = 2.5e-80
Identity = 182/213 (85.45%), Postives = 182/213 (85.45%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLN-------------------------------VMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN                               VMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. NCBI nr
Match: XP_008463636.1 (PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo])

HSP 1 Score: 306.2 bits (783), Expect = 7.4e-80
Identity = 181/213 (84.98%), Postives = 181/213 (84.98%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLN-------------------------------VMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN                               VMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGP MKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. NCBI nr
Match: XP_023520711.1 (NDR1/HIN1-like protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 298.9 bits (764), Expect = 1.2e-77
Identity = 176/213 (82.63%), Postives = 179/213 (84.04%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXX  LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXXSLVIFLIWAILRPSKPRLILQDVTVF 60

Query: 61  GLNV-------------------------------MDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNV                               MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISITMQVTISSHNPNSRIGVYYQTMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. NCBI nr
Match: XP_022973165.1 (NDR1/HIN1-like protein 1 [Cucurbita maxima])

HSP 1 Score: 296.2 bits (757), Expect = 7.6e-77
Identity = 175/213 (82.16%), Postives = 178/213 (83.57%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXX  LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXXSLVIFLIWAILRPSKPRLILQDVTVF 60

Query: 61  GLNV-------------------------------MDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNV                               MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWIS RYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. NCBI nr
Match: XP_022927415.1 (NDR1/HIN1-like protein 1 [Cucurbita moschata])

HSP 1 Score: 294.7 bits (753), Expect = 2.2e-76
Identity = 174/213 (81.69%), Postives = 178/213 (83.57%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCD XXXXXXXXXXXXXXXXXXXXXXXXX  LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDXXXXXXXXXXXXXXXXXXXXXXXXXXXXLVIFLIWAILRPSKPRLILQDVTVF 60

Query: 61  GLNV-------------------------------MDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNV                               MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVT+WSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. TAIR10
Match: AT3G44220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 90/175 (51.43%), Postives = 111/175 (63.43%), Query Frame = 0 

Query: 37  VIFLIWAILRPSKPRLILQDVTLLGLNV-----------------------------MDV 96
           V+FL+WAIL P  PR +LQD T+   NV                             +D+
Sbjct: 34  VVFLVWAILHPHGPRFVLQDATIYAFNVSQPNYLTSNLQVTLSSRNPNDKIGIFYDRLDI 93

Query: 97  YAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNI 156
           YA+YR QQVTL TLLP TYQGH DVT+WSPFLYG  VPVAP F+ AL++D   G +L NI
Sbjct: 94  YASYRNQQVTLATLLPATYQGHLDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNI 153

Query: 157 KVNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           K++G VRWKVG+W+SGRYRL+ NCPAYI      +G   GPA+K+Q VQ C VD+
Sbjct: 154 KIDGWVRWKVGTWVSGRYRLHVNCPAYITLAGHFSG--DGPAVKYQLVQRCAVDV 206

[Close]
BLAST of CsaV3_1G015180 vs. TAIR10
Match: AT5G22200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 174.9 bits (442), Expect = 4.7e-44
Identity = 88/178 (49.44%), Postives = 107/178 (60.11%), Query Frame = 0 

Query: 34  IGLVIFLIWAILRPSKPRLILQDVTLLGLNV----------------------------- 93
           +  V+FL+WAIL P  PR +LQDVT+   NV                             
Sbjct: 35  VAFVVFLVWAILHPHGPRFVLQDVTINDFNVSQPNFLSSNLQVTVSSRNPNDKIGIFYDR 94

Query: 94  MDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAML 153
           +D+Y  YR Q+VTL  LLP TYQGH +VTVWSPFL G AVPVAP  + ALNED   G +L
Sbjct: 95  LDIYVTYRNQEVTLARLLPSTYQGHLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVL 154

Query: 154 FNIKVNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
            NIK++G VRWKVGSW+SG YRL+ NCPA+I       G   GPA+K+Q VQ C VD+
Sbjct: 155 LNIKIDGWVRWKVGSWVSGSYRLHVNCPAFITVTGKLTGT--GPAIKYQLVQRCAVDV 210

[Close]
BLAST of CsaV3_1G015180 vs. TAIR10
Match: AT3G11660.1 (NDR1/HIN1-like 1)

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-41
Identity = 79/175 (45.14%), Postives = 105/175 (60.00%), Query Frame = 0 

Query: 40  LIWAILRPSKPRLILQDVTLLGLNV-------------------------------MDVY 99
           LIWAIL+PSKPR ILQD T+   NV                               +DVY
Sbjct: 35  LIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVY 94

Query: 100 AAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK 159
           A YR QQ+T PT +PPTYQGH DV +WSPF+YG +VP+AP    +L+ D + G +L  I+
Sbjct: 95  ATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIR 154

Query: 160 VNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 183
            +G+VRWKVG++I+G+Y L+  CPAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 155 ADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]
BLAST of CsaV3_1G015180 vs. TAIR10
Match: AT2G35960.1 (NDR1/HIN1-like 12)

HSP 1 Score: 145.2 bits (365), Expect = 4.0e-35
Identity = 71/175 (40.57%), Postives = 100/175 (57.14%), Query Frame = 0 

Query: 38  IFLIWAILRPSKPRLILQDVTLLGLNV-----------------------------MDVY 97
           IFL+W IL+P+KPR ILQD T+   N+                             + VY
Sbjct: 36  IFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVY 95

Query: 98  AAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK 157
           A YR QQ+TL T +PPTYQGH +  VWSPF+YG +VP+AP  A AL ++ N G +   I+
Sbjct: 96  ATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIR 155

Query: 158 VNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 183
            +G+VRWKVG+ I+G+Y L+  C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 156 ADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]
BLAST of CsaV3_1G015180 vs. TAIR10
Match: AT3G52470.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 140.6 bits (353), Expect = 9.7e-34
Identity = 69/177 (38.98%), Postives = 99/177 (55.93%), Query Frame = 0 

Query: 36  LVIFLIWAILRPSKPRLILQDVTLLGLNV-----------------------------MD 95
           + IFL+W ILRP+KPR +LQD T+   N+                             + 
Sbjct: 32  ITIFLVWVILRPTKPRFVLQDATVYAFNLSQPNLLTSNFQVTIASRNPNSKIGIYYDRLH 91

Query: 96  VYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFN 155
           VYA Y  QQ+TL T +PPTYQGH +V VWSPF+YG AVP+AP  + AL E+ + G +   
Sbjct: 92  VYATYMNQQITLRTAIPPTYQGHKEVNVWSPFVYGTAVPIAPYNSVALGEEKDRGFVGLM 151

Query: 156 IKVNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 183
           I+ +G VRWKV + I+G+Y ++  C A+I  G+   G+  G  A+K+     C V++
Sbjct: 152 IRADGTVRWKVRTLITGKYHIHVRCQAFINLGNKAAGVLVGDNAVKYTLANKCSVNV 208

[Close]
BLAST of CsaV3_1G015180 vs. Swiss-Prot
Match: sp|Q9SRN0|NHL1_ARATH (NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 8.7e-40
Identity = 79/175 (45.14%), Postives = 105/175 (60.00%), Query Frame = 0 

Query: 40  LIWAILRPSKPRLILQDVTLLGLNV-------------------------------MDVY 99
           LIWAIL+PSKPR ILQD T+   NV                               +DVY
Sbjct: 35  LIWAILQPSKPRFILQDATVYAFNVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVY 94

Query: 100 AAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK 159
           A YR QQ+T PT +PPTYQGH DV +WSPF+YG +VP+AP    +L+ D + G +L  I+
Sbjct: 95  ATYRSQQITFPTSIPPTYQGHKDVDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIR 154

Query: 160 VNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 183
            +G+VRWKVG++I+G+Y L+  CPAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 155 ADGRVRWKVGTFITGKYHLHVKCPAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]
BLAST of CsaV3_1G015180 vs. Swiss-Prot
Match: sp|Q9SJ54|NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.1e-34
Identity = 71/175 (40.57%), Postives = 100/175 (57.14%), Query Frame = 0 

Query: 38  IFLIWAILRPSKPRLILQDVTLLGLNV-----------------------------MDVY 97
           IFL+W IL+P+KPR ILQD T+   N+                             + VY
Sbjct: 36  IFLVWIILQPTKPRFILQDATVYAFNLSQPNLLTSNFQITIASRNRNSRIGIYYDRLHVY 95

Query: 98  AAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK 157
           A YR QQ+TL T +PPTYQGH +  VWSPF+YG +VP+AP  A AL ++ N G +   I+
Sbjct: 96  ATYRNQQITLRTAIPPTYQGHKEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIR 155

Query: 158 VNGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 183
            +G+VRWKVG+ I+G+Y L+  C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 156 ADGRVRWKVGTLITGKYHLHVRCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]
BLAST of CsaV3_1G015180 vs. Swiss-Prot
Match: sp|Q9FI03|NHL26_ARATH (NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 3.0e-24
Identity = 53/154 (34.42%), Postives = 81/154 (52.60%), Query Frame = 0 

Query: 36  LVIFLIWAILRPSKPRLILQDVTLLGLNV------------------------------- 95
           L+IFL+W IL P +P   L +  +  LN+                               
Sbjct: 40  LIIFLVWLILHPERPEFSLTEADIYSLNLTTSSTHLLNSSVQLTLFSKNPNKKVGIYYDK 99

Query: 96  MDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAML 155
           + VYAAYRGQQ+T    LPP YQ H ++ + + FL G  +PVA  F   ++ + + G ++
Sbjct: 100 LLVYAAYRGQQITSEASLPPFYQSHEEINLLTAFLQGTELPVAQSFGYQISRERSTGKII 159

Query: 156 FNIKVNGQVRWKVGSWISGRYRLNANCPAYIKFG 159
             +K++G++RWK+G+W+SG YR N NC A + FG
Sbjct: 160 IGMKMDGKLRWKIGTWVSGAYRFNVNCLAIVAFG 193

[Close]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match: tr|A0A0A0LVW5|A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 1.7e-80
Identity = 182/213 (85.45%), Postives = 182/213 (85.45%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLN-------------------------------VMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN                               VMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match: tr|A0A1S3CJQ5|A0A1S3CJQ5_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103501736 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 4.9e-80
Identity = 181/213 (84.98%), Postives = 181/213 (84.98%), Query Frame = 0 

Query: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHXXXXXXXXXXXXXXXXXXXXXXXXXIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLN-------------------------------VMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN                               VMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           NCPAYIKFGDPKNGIAFGP MKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match: tr|A0A1S3BNB5|A0A1S3BNB5_CUCME (NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103491431 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.9e-53
Identity = 102/172 (59.30%), Postives = 119/172 (69.19%), Query Frame = 0 

Query: 41  IWAILRPSKPRLILQDVTLLGLN------------------------------VMDVYAA 100
           +WA+LRPSKP  ILQDVT+ GLN                               MDVY A
Sbjct: 40  VWAVLRPSKPHFILQDVTVFGLNASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGA 99

Query: 101 YRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVN 160
           YRGQQVTLPTLLP TYQGH DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++
Sbjct: 100 YRGQQVTLPTLLPSTYQGHRDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKID 159

Query: 161 GQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           GQV+WKVG+WISGRY LN NCPA+IKFG+P   IA G AMKFQ VQ C V++
Sbjct: 160 GQVKWKVGTWISGRYHLNVNCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match: tr|A0A0A0KI64|A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 3.9e-53
Identity = 102/172 (59.30%), Postives = 119/172 (69.19%), Query Frame = 0 

Query: 41  IWAILRPSKPRLILQDVTLLGLN------------------------------VMDVYAA 100
           +WA+LRPSKP  ILQDVT+ GLN                               MDVY A
Sbjct: 41  VWAVLRPSKPHFILQDVTVFGLNASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGA 100

Query: 101 YRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVN 160
           YRGQQVTLPTLLP TYQGH DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++
Sbjct: 101 YRGQQVTLPTLLPSTYQGHRDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKID 160

Query: 161 GQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           GQV+WKVG+WISGRY LN NCPA+IKFG+P   IA G AMKFQ VQ C V++
Sbjct: 161 GQVKWKVGTWISGRYHLNVNCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match: tr|A0A2I4GWV4|A0A2I4GWV4_9ROSI (NDR1/HIN1-like protein 12 OS=Juglans regia OX=51240 GN=LOC109011582 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 91/173 (52.60%), Postives = 112/173 (64.74%), Query Frame = 0 

Query: 41  IWAILRPSKPRLILQDVTLLGLNV-------------------------------MDVYA 100
           +WAIL P+KPR ILQD T+   NV                               +++YA
Sbjct: 43  VWAILHPTKPRFILQDATVYAFNVSTSPPFTXXXXMQVTVSSRNRMDRVGIYYQKLNIYA 102

Query: 101 AYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKV 160
            YR QQVTL TLLPPTYQGH +V+VWSPFLYG +VP+ P   EAL +D N+G++LF IK+
Sbjct: 103 TYRSQQVTLQTLLPPTYQGHKEVSVWSPFLYGNSVPIWPRLMEALQQDQNIGSVLFKIKI 162

Query: 161 NGQVRWKVGSWISGRYRLNANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 183
           +G ++WKVG+W SGRY L+ NCPAYIKFGD  NG   GP MKFQ VQGC VD+
Sbjct: 163 DGTIKWKVGTWFSGRYHLHVNCPAYIKFGDRNNGFPVGPVMKFQLVQGCNVDV 215

The following BLAST results are available for this feature:
BLAST of CsaV3_1G015180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004139592.12.5e-8085.45PREDICTED: protein YLS9-like [Cucumis sativus] >KGN64967.1 hypothetical protein ... [more]
XP_008463636.17.4e-8084.98PREDICTED: NDR1/HIN1-like protein 12 [Cucumis melo][more]
XP_023520711.11.2e-7782.63NDR1/HIN1-like protein 1 [Cucurbita pepo subsp. pepo][more]
XP_022973165.17.6e-7782.16NDR1/HIN1-like protein 1 [Cucurbita maxima][more]
XP_022927415.12.2e-7681.69NDR1/HIN1-like protein 1 [Cucurbita moschata][more]
BLAST of CsaV3_1G015180 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44220.11.0e-4651.43Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family[more]
AT5G22200.14.7e-4449.44Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family[more]
AT3G11660.14.8e-4145.14NDR1/HIN1-like 1[more]
AT2G35960.14.0e-3540.57NDR1/HIN1-like 12[more]
AT3G52470.19.7e-3438.98Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family[more]
BLAST of CsaV3_1G015180 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9SRN0|NHL1_ARATH8.7e-4045.14NDR1/HIN1-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=NHL1 PE=2 SV=1[more]
sp|Q9SJ54|NHL12_ARATH7.1e-3440.57NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana OX=3702 GN=NHL12 PE=2 SV=1[more]
sp|Q9FI03|NHL26_ARATH3.0e-2434.42NDR1/HIN1-like protein 26 OS=Arabidopsis thaliana OX=3702 GN=NHL26 PE=2 SV=1[more]
BLAST of CsaV3_1G015180 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LVW5|A0A0A0LVW5_CUCSA1.7e-8085.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G169420 PE=4 SV=1[more]
tr|A0A1S3CJQ5|A0A1S3CJQ5_CUCME4.9e-8084.98NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103501736 PE=4 SV=1[more]
tr|A0A1S3BNB5|A0A1S3BNB5_CUCME3.9e-5359.30NDR1/HIN1-like protein 12 OS=Cucumis melo OX=3656 GN=LOC103491431 PE=4 SV=1[more]
tr|A0A0A0KI64|A0A0A0KI64_CUCSA3.9e-5359.30Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G425840 PE=4 SV=1[more]
tr|A0A2I4GWV4|A0A2I4GWV4_9ROSI1.7e-4852.60NDR1/HIN1-like protein 12 OS=Juglans regia OX=51240 GN=LOC109011582 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_1G015180.1CsaV3_1G015180.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR31415:SF17LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 65..182
coord: 1..65
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 65..182
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 1..65

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_1G015180CSPI01G15080Wild cucumber (PI 183967)cpicucB001
CsaV3_1G015180Cucsa.319610Cucumber (Gy14) v1cgycucB496
CsaV3_1G015180CmaCh02G013080Cucurbita maxima (Rimu)cmacucB0694
CsaV3_1G015180CmaCh13G003440Cucurbita maxima (Rimu)cmacucB0253
CsaV3_1G015180CmaCh06G005180Cucurbita maxima (Rimu)cmacucB0962
CsaV3_1G015180CmoCh06G005180Cucurbita moschata (Rifu)cmocucB0951
CsaV3_1G015180CmoCh13G003670Cucurbita moschata (Rifu)cmocucB0239
CsaV3_1G015180Cp4.1LG00g01670Cucurbita pepo (Zucchini)cpecucB0003
CsaV3_1G015180Cp4.1LG08g09740Cucurbita pepo (Zucchini)cpecucB1044
CsaV3_1G015180CsGy1G014860Cucumber (Gy14) v2cgybcucB002
CsaV3_1G015180Cla008622Watermelon (97103) v1cucwmB074
CsaV3_1G015180Cla017636Watermelon (97103) v1cucwmB009
CsaV3_1G015180Cla011041Watermelon (97103) v1cucwmB049
CsaV3_1G015180MELO3C025577Melon (DHL92) v3.5.1cucmeB030
CsaV3_1G015180MELO3C009532Melon (DHL92) v3.5.1cucmeB072
CsaV3_1G015180ClCG01G011600Watermelon (Charleston Gray)cucwcgB024
CsaV3_1G015180ClCG02G022400Watermelon (Charleston Gray)cucwcgB030
CsaV3_1G015180Lsi02G011930Bottle gourd (USVL1VR-Ls)cuclsiB033
CsaV3_1G015180Lsi10G011400Bottle gourd (USVL1VR-Ls)cuclsiB005
CsaV3_1G015180Lsi01G011860Bottle gourd (USVL1VR-Ls)cuclsiB021
CsaV3_1G015180MELO3C025577.2Melon (DHL92) v3.6.1cucmedB009
CsaV3_1G015180Cla97C01G011240Watermelon (97103) v2cucwmbB008
CsaV3_1G015180Cla97C10G201390Watermelon (97103) v2cucwmbB017
CsaV3_1G015180Cla97C02G048480Watermelon (97103) v2cucwmbB025
CsaV3_1G015180BhiUN452G21Wax gourdcucwgoB072
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CsaV3_1G015180CsaV3_UNG232230Cucumber (Chinese Long) v3cuccucB005
CsaV3_1G015180CsaV3_3G037880Cucumber (Chinese Long) v3cuccucB023
CsaV3_1G015180CsaV3_6G041060Cucumber (Chinese Long) v3cuccucB046
The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_1G015180Cucumber (Chinese Long) v3cuccucB053
CsaV3_1G015180Silver-seed gourdcarcucB0000
CsaV3_1G015180Cucurbita maxima (Rimu)cmacucB0476
CsaV3_1G015180Cucurbita maxima (Rimu)cmacucB1004
CsaV3_1G015180Wild cucumber (PI 183967)cpicucB318
CsaV3_1G015180Bottle gourd (USVL1VR-Ls)cuclsiB017
CsaV3_1G015180Melon (DHL92) v3.5.1cucmeB016
CsaV3_1G015180Watermelon (Charleston Gray)cucwcgB029
CsaV3_1G015180Watermelon (97103) v1cucwmB064