CmaCh13G003440 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh13G003440
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
LocationCma_Chr13 : 3993817 .. 3994837 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTTCTCACTCAACAATGACGGTAAAGGACTGCGACCACCACCACCACCACGACTGCGAGCGCCGCCGTCTCTACCGCAGAATAGCCTGCGCCATCTTCACCGTCATCCTCTTGATTAGCCTAGTCATCTTCCTCATCTGGGCTATCCTCCGGCCATCCAAGCCCCGCCTCATTCTCCAAGACGTCACGGTTTTCGGCCTGAACGTCTCCTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATCGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAGGGCCACAATGATGTCACCGTTTGGTCTCCATTTTTGTACGGCGAAGCTGTGCCGGTGGCACCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAATGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTTTGTTCAGTATAATATATAGTTGTAATCAGTATTTTTTTTTATTTTTTATTTTTAATTGTTGCAGTATACTTTCGATCTGAACATTAAGATATTTTGTTTTGAGAAACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGACAGGTATCGGCTGAACGCCAACTGTCCGGCGTATATAAAGTTCGGCGATCCAAAGAATGGGATTGCATTTGGACCAGCGATGAAGTTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGAGGTCGCAAGAGTCCACGTCTTGTATCTCCTTTTCCACGACCCATATAAGTCTTTATGTAGTTGCCAAAATCAACGAGATTTATTAGAATTATAGTTCTAAATTCTTTAAATCGAATACTTTTTATAATGTATACACACATCATAGATTCCGGTGTACCTCAATCGAGTTTAAGTGGCTAAATTGGATTAGATTTTGAGATAACTTTTTAGACCAACCTAAAAGTTGGGTTCCTTGGATTGGTAGTTTAACC

mRNA sequence

CTTTCTCACTCAACAATGACGGTAAAGGACTGCGACCACCACCACCACCACGACTGCGAGCGCCGCCGTCTCTACCGCAGAATAGCCTGCGCCATCTTCACCGTCATCCTCTTGATTAGCCTAGTCATCTTCCTCATCTGGGCTATCCTCCGGCCATCCAAGCCCCGCCTCATTCTCCAAGACGTCACGGTTTTCGGCCTGAACGTCTCCTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATCGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAGGGCCACAATGATGTCACCGTTTGGTCTCCATTTTTGTACGGCGAAGCTGTGCCGGTGGCACCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAATGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGACAGGTATCGGCTGAACGCCAACTGTCCGGCGTATATAAAGTTCGGCGATCCAAAGAATGGGATTGCATTTGGACCAGCGATGAAGTTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGAGGTCGCAAGAGTCCACGTCTTGTATCTCCTTTTCCACGACCCATATAAGTCTTTATGTAGTTGCCAAAATCAACGAGATTTATTAGAATTATAGTTCTAAATTCTTTAAATCGAATACTTTTTATAATGTATACACACATCATAGATTCCGGTGTACCTCAATCGAGTTTAAGTGGCTAAATTGGATTAGATTTTGAGATAACTTTTTAGACCAACCTAAAAGTTGGGTTCCTTGGATTGGTAGTTTAACC

Coding sequence (CDS)

ATGACGGTAAAGGACTGCGACCACCACCACCACCACGACTGCGAGCGCCGCCGTCTCTACCGCAGAATAGCCTGCGCCATCTTCACCGTCATCCTCTTGATTAGCCTAGTCATCTTCCTCATCTGGGCTATCCTCCGGCCATCCAAGCCCCGCCTCATTCTCCAAGACGTCACGGTTTTCGGCCTGAACGTCTCCTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATCGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAGGGCCACAATGATGTCACCGTTTGGTCTCCATTTTTGTACGGCGAAGCTGTGCCGGTGGCACCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAATGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGACAGGTATCGGCTGAACGCCAACTGTCCGGCGTATATAAAGTTCGGCGATCCAAAGAATGGGATTGCATTTGGACCAGCGATGAAGTTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGA

Protein sequence

MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNANCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI
Homology
[Close]
BLAST of CmaCh13G003440 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 6.4e-47
Identity = 95/214 (44.39%), Postives = 135/214 (63.08%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT KDC +H            RI   I   I+++ + IFL+W IL+P+KPR ILQD TV+
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  Q+TI+S N NSRIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+ +Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]
BLAST of CmaCh13G003440 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.4e-11
Identity = 43/157 (27.39%), Postives = 80/157 (50.96%), Query Frame = 1 

Query: 27  IFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLNVSSVPPAAISTTMQVTISSHNPN 86
           I ++I+++ +   + W I+RP   +  + D ++   + +S P   +   + +T+   NPN
Sbjct: 45  IISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS-PDNILRYNLALTVPVRNPN 104

Query: 87  SRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPV-APEFAEAL 146
            RIG+YY  ++ +A Y G++ +  T L P YQGH + TV +P   G+ + +     +  L
Sbjct: 105 KRIGLYYDRIEAHAYYEGKRFSTIT-LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTL 164

Query: 147 NEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNANC 183
           N +   G     IK   +VR+K+G     R +   +C
Sbjct: 165 NAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

[Close]
BLAST of CmaCh13G003440 vs. TrEMBL
Match: A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 7.0e-117
Identity = 202/213 (94.84%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IFTV+LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWIS RYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CmaCh13G003440 vs. TrEMBL
Match: A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.4e-72
Identity = 131/213 (61.50%), Postives = 165/213 (77.46%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KD     HH+ + ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVF
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WIS RY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPA+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]
BLAST of CmaCh13G003440 vs. TrEMBL
Match: A0A068UGU2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.6e-66
Identity = 117/213 (54.93%), Postives = 158/213 (74.18%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC H+ H   E+R+L+RR+  A+   I+LI  +I L+W ILRP+KP  +LQD TV+
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  Q+T+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            D+TVWSPFLYG +VP+AP + +AL +D   G +L NIK+NG+VRWKVG++IS RY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI  G+  +GI  GPA+K++ VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

[Close]
BLAST of CmaCh13G003440 vs. TrEMBL
Match: A0A0D2QBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.7e-65
Identity = 118/213 (55.40%), Postives = 157/213 (73.71%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC HH     +  +L +RI  AI  V +++ ++IFL+WAIL P KPR ILQDVT++
Sbjct: 1   MSAKDCGHHD----DEEQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+++  P  +++ MQ+T+SS NPN RIG+YYQ +D++A+Y  QQ+TLPTL+P TYQGH
Sbjct: 61  AFNLTA--PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            DVTVWSPFLYG AVPVAP   E L++D N G +L NIK+ GQ++WKVG+WIS RY++NA
Sbjct: 121 LDVTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI F D    I  G AMK++ VQ C VD+
Sbjct: 181 NCPAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

[Close]
BLAST of CmaCh13G003440 vs. TrEMBL
Match: B9HPW0_POPTR (Harpin-induced family protein OS=Populus trichocarpa GN=POPTR_0009s02470g PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 4.8e-65
Identity = 119/211 (56.40%), Postives = 157/211 (74.41%), Query Frame = 1 

Query: 3   VKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGL 62
           V+DC HH   D E +  +R I   I  VI+ I +VIFL+W +L+P  PR ILQD T++GL
Sbjct: 5   VEDCGHH---DAENKH-HRHIFIGILAVIITILVVIFLVWIVLQPHNPRFILQDTTIYGL 64

Query: 63  NVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHND 122
           N+S   P  +S+ MQVTIS+ NPN +IG+YY+ +D+YA+Y  QQ+TL T LPPTYQGHND
Sbjct: 65  NLSD--PNFLSSNMQVTISTKNPNDKIGIYYEKLDIYASYHNQQITLATELPPTYQGHND 124

Query: 123 VTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNANC 182
           V+VWSPFLYG+AVPV+P  A ++N+D N G +LFNIKING+++WKVGSW+S RYR+  NC
Sbjct: 125 VSVWSPFLYGDAVPVSPYLAVSINQDVNAGVLLFNIKINGKLKWKVGSWLSGRYRIFVNC 184

Query: 183 PAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           PAYI  G   NGI  G  +K++ VQ C+VD+
Sbjct: 185 PAYITLGSRSNGINVGTGIKYQIVQHCHVDV 209

[Close]
BLAST of CmaCh13G003440 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 237.3 bits (604), Expect = 8.9e-63
Identity = 112/213 (52.58%), Postives = 150/213 (70.42%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT K+C+HHH  D    ++ +RI   +   +  +  V+FL+WAIL P  PR +LQD T++
Sbjct: 1   MTEKECEHHHDED---EKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS   P  +++ +QVT+SS NPN +IG++Y  +D+YA+YR QQVTL TLLP TYQGH
Sbjct: 61  AFNVSQ--PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            DVT+WSPFLYG  VPVAP F+ AL++D   G +L NIKI+G VRWKVG+W+S RYRL+ 
Sbjct: 121 LDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI      +G   GPA+K++ VQ C VD+
Sbjct: 181 NCPAYITLAGHFSG--DGPAVKYQLVQRCAVDV 206

[Close]
BLAST of CmaCh13G003440 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 233.0 bits (593), Expect = 1.7e-61
Identity = 109/212 (51.42%), Postives = 150/212 (70.75%), Query Frame = 1 

Query: 3   VKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGL 62
           +KDC++H H    RR+L RRI  +I  V+ +I L I LIWAIL+PSKPR ILQD TV+  
Sbjct: 1   MKDCENHGH---SRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAF 60

Query: 63  NVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHND 122
           NVS  PP  +++  Q+T+SS NPN++IG+YY  +DVYA YR QQ+T PT +PPTYQGH D
Sbjct: 61  NVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKD 120

Query: 123 VTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNANC 182
           V +WSPF+YG +VP+AP    +L+ D + G +L  I+ +G+VRWKVG++I+ +Y L+  C
Sbjct: 121 VDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 180

Query: 183 PAYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
           PAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 181 PAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]
BLAST of CmaCh13G003440 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 114/214 (53.27%), Postives = 148/214 (69.16%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLY-RRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTV 60
           MT + CD H+ ++  R R+  RRIA A   +I+ ++ V+FL+WAIL P  PR +LQDVT+
Sbjct: 1   MTGRYCDQHNGYEERRMRMMMRRIAWACLGLIVAVAFVVFLVWAILHPHGPRFVLQDVTI 60

Query: 61  FGLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQG 120
              NVS   P  +S+ +QVT+SS NPN +IG++Y  +D+Y  YR Q+VTL  LLP TYQG
Sbjct: 61  NDFNVSQ--PNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQG 120

Query: 121 HNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLN 180
           H +VTVWSPFL G AVPVAP  + ALNED   G +L NIKI+G VRWKVGSW+S  YRL+
Sbjct: 121 HLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLH 180

Query: 181 ANCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
            NCPA+I       G   GPA+K++ VQ C VD+
Sbjct: 181 VNCPAFITVTGKLTGT--GPAIKYQLVQRCAVDV 210

[Close]
BLAST of CmaCh13G003440 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-52
Identity = 100/213 (46.95%), Postives = 141/213 (66.20%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT KDC  H  H    R++   +   I  ++LLI +VI L+WAIL+PSKPR +LQD TVF
Sbjct: 1   MTSKDCGSHDSHSSCNRKI---VIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVF 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS  PP  +++  Q T+SS NPN +IG+YY  +DVYA+YR QQ+TLP+ +  TYQGH
Sbjct: 61  NFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            +V VWSPF+ G +VPVAP  A  L++D++ GA++  + ++G+VRWKVGS+I+ +Y L+ 
Sbjct: 121 KEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
            C A I FG    G+  G   K+   + C V +
Sbjct: 181 RCHALINFGSSAAGVIVG---KYMLTETCSVSV 207

[Close]
BLAST of CmaCh13G003440 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 188.7 bits (478), Expect = 3.6e-48
Identity = 95/214 (44.39%), Postives = 135/214 (63.08%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT KDC +H            RI   I   I+++ + IFL+W IL+P+KPR ILQD TV+
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  Q+TI+S N NSRIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+ +Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]
BLAST of CmaCh13G003440 vs. NCBI nr
Match: gi|449443654|ref|XP_004139592.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 1.0e-116
Identity = 202/213 (94.84%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IFTV+LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWIS RYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CmaCh13G003440 vs. NCBI nr
Match: gi|659127309|ref|XP_008463636.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 423.3 bits (1087), Expect = 2.5e-115
Identity = 199/213 (93.43%), Postives = 208/213 (97.65%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHHDCERRRLYRRIAC IF+++LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFSLLLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWIS RYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGP MKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]
BLAST of CmaCh13G003440 vs. NCBI nr
Match: gi|449444813|ref|XP_004140168.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 280.8 bits (717), Expect = 2.0e-72
Identity = 131/213 (61.50%), Postives = 165/213 (77.46%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KD     HH+ + ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVF
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WIS RY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPA+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]
BLAST of CmaCh13G003440 vs. NCBI nr
Match: gi|659097380|ref|XP_008449594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 278.9 bits (712), Expect = 7.6e-72
Identity = 131/210 (62.38%), Postives = 163/210 (77.62%), Query Frame = 1 

Query: 4   KDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLN 63
           KDC H    D + ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVFGLN
Sbjct: 7   KDCGH----DDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNANCP 183
            VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WIS RY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           A+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]
BLAST of CmaCh13G003440 vs. NCBI nr
Match: gi|661889271|emb|CDP06858.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 258.8 bits (660), Expect = 8.1e-66
Identity = 117/213 (54.93%), Postives = 158/213 (74.18%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHDCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC H+ H   E+R+L+RR+  A+   I+LI  +I L+W ILRP+KP  +LQD TV+
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  Q+T+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISDRYRLNA 180
            D+TVWSPFLYG +VP+AP + +AL +D   G +L NIK+NG+VRWKVG++IS RY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI  G+  +GI  GPA+K++ VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

The following BLAST results are available for this feature:
BLAST of CmaCh13G003440 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NHL12_ARATH6.4e-4744.39NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1[more]
YLS9_ARATH7.4e-1127.39Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1[more]
BLAST of CmaCh13G003440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVW5_CUCSA7.0e-11794.84Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1[more]
A0A0A0KI64_CUCSA1.4e-7261.50Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1[more]
A0A068UGU2_COFCA5.6e-6654.93Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1[more]
A0A0D2QBT8_GOSRA3.7e-6555.40Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1[more]
B9HPW0_POPTR4.8e-6556.40Harpin-induced family protein OS=Populus trichocarpa GN=POPTR_0009s02470g PE=4 S... [more]
BLAST of CmaCh13G003440 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44220.18.9e-6352.58 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G11660.11.7e-6151.42 NDR1/HIN1-like 1[more]
AT5G22200.11.2e-5953.27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT5G06330.11.1e-5246.95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT2G35960.13.6e-4844.39 NDR1/HIN1-like 12[more]
BLAST of CmaCh13G003440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443654|ref|XP_004139592.1|1.0e-11694.84PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659127309|ref|XP_008463636.1|2.5e-11593.43PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|449444813|ref|XP_004140168.1|2.0e-7261.50PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659097380|ref|XP_008449594.1|7.6e-7262.38PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|661889271|emb|CDP06858.1|8.1e-6654.93unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh13G003440.1CmaCh13G003440.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 79..182
score: 4.0
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 1..213
score: 3.7
NoneNo IPR availablePANTHERPTHR31415:SF17LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 1..213
score: 3.7