CmoCh13G003670 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003670
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLate embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
LocationCmo_Chr13 : 4702845 .. 4703897 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTGTCACCTACTATAAAACTATCTTGTTTGTGAAGCCAAAAATATATCCCTCTCTCTCTCTCACAACAATGACGGTAAAGGACTGCGACCACCACCACCACCACCACTGCGAGCGCCGCCGTCTCTACCGCCGAATAGCCTGCGCCATCTTCACTGTCATCCTCTTGATTAGCCTTGTCATCTTCCTCATCTGGGCTATCCTCCGGCCGTCCAAGCCCCGCCTCATTCTCCAAGACGTCACCGTTTTCGGCCTGAACGTCTCGTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATTGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAAGGCCACAATGATGTCACCATTTGGTCACCGTTTTTGTACGGCGAAGCTGTGCCGGTGGCGCCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAACGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTTTGCTCGTAGAATATATTTTATACAGTTGTAATCAGTATTTTTCTTTTTTAATTGTGTTGCACTATACTTTCCATCTTATTTATGTTGTTCATTCTTAACTTAATATATTTTGTCTCAACGAAACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGGCAGGTATCGGTTGAACGCGAACTGTCCGGCGTATATAAAGTTCGGTGATCCAAAGAATGGGATTGCATTCGGACCGGCGATGAAATTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGAGGTCCCAAGAGTCCACTTCTTGTATTTCCTTTTCCACGACCCTTATAAGTCTTTATGATCAACGAGATTTATTAGAATTATAGTTCTAAATTCTTTAAATCGACTACTTTTTATATGTATACACACATCATAGATCCGGGTGTACCTCGTTAGATTGAGGGAACTTTTTGGACCAACCTAAAAGTTCGGGTTCGTTGGATTAGTAGTCTAACC

mRNA sequence

CTGTCACCTACTATAAAACTATCTTGTTTGTGAAGCCAAAAATATATCCCTCTCTCTCTCTCACAACAATGACGGTAAAGGACTGCGACCACCACCACCACCACCACTGCGAGCGCCGCCGTCTCTACCGCCGAATAGCCTGCGCCATCTTCACTGTCATCCTCTTGATTAGCCTTGTCATCTTCCTCATCTGGGCTATCCTCCGGCCGTCCAAGCCCCGCCTCATTCTCCAAGACGTCACCGTTTTCGGCCTGAACGTCTCGTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATTGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAAGGCCACAATGATGTCACCATTTGGTCACCGTTTTTGTACGGCGAAGCTGTGCCGGTGGCGCCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAACGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGGCAGGTATCGGTTGAACGCGAACTGTCCGGCGTATATAAAGTTCGGTGATCCAAAGAATGGGATTGCATTCGGACCGGCGATGAAATTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGAGGTCCCAAGAGTCCACTTCTTGTATTTCCTTTTCCACGACCCTTATAAGTCTTTATGATCAACGAGATTTATTAGAATTATAGTTCTAAATTCTTTAAATCGACTACTTTTTATATGTATACACACATCATAGATCCGGGTGTACCTCGTTAGATTGAGGGAACTTTTTGGACCAACCTAAAAGTTCGGGTTCGTTGGATTAGTAGTCTAACC

Coding sequence (CDS)

ATGACGGTAAAGGACTGCGACCACCACCACCACCACCACTGCGAGCGCCGCCGTCTCTACCGCCGAATAGCCTGCGCCATCTTCACTGTCATCCTCTTGATTAGCCTTGTCATCTTCCTCATCTGGGCTATCCTCCGGCCGTCCAAGCCCCGCCTCATTCTCCAAGACGTCACCGTTTTCGGCCTGAACGTCTCGTCGGTGCCACCGGCTGCCATCTCGACCACCATGCAGGTCACCATCTCCTCCCACAACCCCAACTCCCGCATTGGTGTTTACTACCAAATCATGGATGTTTACGCCGCCTACCGCGGCCAGCAGGTCACTCTCCCGACGCTCTTGCCGCCGACTTACCAAGGCCACAATGATGTCACCATTTGGTCACCGTTTTTGTACGGCGAAGCTGTGCCGGTGGCGCCCGAGTTTGCTGAAGCTTTGAATGAGGATAATAACGTTGGAGCCATGCTGTTCAATATCAAGATCAATGGACAGGTTAGGTGGAAGGTTGGGAGCTGGATCTCAGGCAGGTATCGGTTGAACGCGAACTGTCCGGCGTATATAAAGTTCGGTGATCCAAAGAATGGGATTGCATTCGGACCGGCGATGAAATTTCGGTTCGTTCAAGGTTGTTATGTCGATATTTGA
Homology
[Close]
BLAST of CmoCh13G003670 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-47
Identity = 95/214 (44.39%), Postives = 136/214 (63.55%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT KDC +H            RI   I   I+++ + IFL+W IL+P+KPR ILQD TV+
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  Q+TI+S N NSRIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            +  +WSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+G+Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]
BLAST of CmoCh13G003670 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 9.7e-11
Identity = 42/157 (26.75%), Postives = 80/157 (50.96%), Query Frame = 1 

Query: 27  IFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLNVSSVPPAAISTTMQVTISSHNPN 86
           I ++I+++ +   + W I+RP   +  + D ++   + +S P   +   + +T+   NPN
Sbjct: 45  IISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS-PDNILRYNLALTVPVRNPN 104

Query: 87  SRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDVTIWSPFLYGEAVPV-APEFAEAL 146
            RIG+YY  ++ +A Y G++ +  T L P YQGH + T+ +P   G+ + +     +  L
Sbjct: 105 KRIGLYYDRIEAHAYYEGKRFSTIT-LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTL 164

Query: 147 NEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANC 183
           N +   G     IK   +VR+K+G     R +   +C
Sbjct: 165 NAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

[Close]
BLAST of CmoCh13G003670 vs. TrEMBL
Match: A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 426.4 bits (1095), Expect = 2.0e-116
Identity = 201/213 (94.37%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHH CERRRLYRRIAC IFTV+LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
           NDVT+WSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CmoCh13G003670 vs. TrEMBL
Match: A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 1.8e-72
Identity = 131/210 (62.38%), Postives = 164/210 (78.10%), Query Frame = 1 

Query: 4   KDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLN 63
           KDC HH   +   ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVFGLN
Sbjct: 7   KDCGHHEDDY---QQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANCP 183
            +WSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WISGRY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           A+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]
BLAST of CmoCh13G003670 vs. TrEMBL
Match: A0A068UGU2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 1.5e-66
Identity = 117/213 (54.93%), Postives = 159/213 (74.65%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC H+ H   E+R+L+RR+  A+   I+LI  +I L+W ILRP+KP  +LQD TV+
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  Q+T+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            D+T+WSPFLYG +VP+AP + +AL +D   G +L NIK+NG+VRWKVG++ISGRY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI  G+  +GI  GPA+K++ VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

[Close]
BLAST of CmoCh13G003670 vs. TrEMBL
Match: A0A0D2QBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 9.6e-66
Identity = 118/213 (55.40%), Postives = 158/213 (74.18%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC HH     +  +L +RI  AI  V +++ ++IFL+WAIL P KPR ILQDVT++
Sbjct: 1   MSAKDCGHHD----DEEQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+++  P  +++ MQ+T+SS NPN RIG+YYQ +D++A+Y  QQ+TLPTL+P TYQGH
Sbjct: 61  AFNLTA--PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            DVT+WSPFLYG AVPVAP   E L++D N G +L NIK+ GQ++WKVG+WISGRY++NA
Sbjct: 121 LDVTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI F D    I  G AMK++ VQ C VD+
Sbjct: 181 NCPAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

[Close]
BLAST of CmoCh13G003670 vs. TrEMBL
Match: V4RS29_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 3.7e-65
Identity = 119/215 (55.35%), Postives = 161/215 (74.88%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC H H    ++++L R I  A+  +I+++ L+IFL WAI RPSKP  ILQD T++
Sbjct: 1   MSEKDCGHSHD---DKKKLVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATLY 60

Query: 61  GLNVSS--VPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQ 120
             N+S+   PP A++T +QVTI++ NPN +IG+YYQ  DVYA+YR QQ++L TLLP TYQ
Sbjct: 61  AFNLSTGPSPPNALTTNLQVTITTRNPNDKIGIYYQKADVYASYRNQQISLATLLPATYQ 120

Query: 121 GHNDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRL 180
           GH DV +WSPFLYG +VPV+P  AEAL +D N G ++ NIK++G+++WKVG+WISGRY L
Sbjct: 121 GHKDVIVWSPFLYGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHL 180

Query: 181 NANCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           + NCPAYI FGD   GIA G ++KF+ VQ C VD+
Sbjct: 181 HVNCPAYITFGDKSKGIASGASVKFQLVQSCSVDV 212

[Close]
BLAST of CmoCh13G003670 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 239.2 bits (609), Expect = 2.3e-63
Identity = 114/213 (53.52%), Postives = 151/213 (70.89%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT K+C+HHH    E  ++ +RI   +   +  +  V+FL+WAIL P  PR +LQD T++
Sbjct: 1   MTEKECEHHHD---EDEKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS   P  +++ +QVT+SS NPN +IG++Y  +D+YA+YR QQVTL TLLP TYQGH
Sbjct: 61  AFNVSQ--PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            DVTIWSPFLYG  VPVAP F+ AL++D   G +L NIKI+G VRWKVG+W+SGRYRL+ 
Sbjct: 121 LDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI      +G   GPA+K++ VQ C VD+
Sbjct: 181 NCPAYITLAGHFSG--DGPAVKYQLVQRCAVDV 206

[Close]
BLAST of CmoCh13G003670 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-62
Identity = 111/212 (52.36%), Postives = 151/212 (71.23%), Query Frame = 1 

Query: 3   VKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGL 62
           +KDC++H H    RR+L RRI  +I  V+ +I L I LIWAIL+PSKPR ILQD TV+  
Sbjct: 1   MKDCENHGH---SRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAF 60

Query: 63  NVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHND 122
           NVS  PP  +++  Q+T+SS NPN++IG+YY  +DVYA YR QQ+T PT +PPTYQGH D
Sbjct: 61  NVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKD 120

Query: 123 VTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANC 182
           V IWSPF+YG +VP+AP    +L+ D + G +L  I+ +G+VRWKVG++I+G+Y L+  C
Sbjct: 121 VDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 180

Query: 183 PAYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
           PAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 181 PAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]
BLAST of CmoCh13G003670 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-59
Identity = 114/214 (53.27%), Postives = 148/214 (69.16%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLY-RRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTV 60
           MT + CD H+ +   R R+  RRIA A   +I+ ++ V+FL+WAIL P  PR +LQDVT+
Sbjct: 1   MTGRYCDQHNGYEERRMRMMMRRIAWACLGLIVAVAFVVFLVWAILHPHGPRFVLQDVTI 60

Query: 61  FGLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQG 120
              NVS   P  +S+ +QVT+SS NPN +IG++Y  +D+Y  YR Q+VTL  LLP TYQG
Sbjct: 61  NDFNVSQ--PNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQG 120

Query: 121 HNDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLN 180
           H +VT+WSPFL G AVPVAP  + ALNED   G +L NIKI+G VRWKVGSW+SG YRL+
Sbjct: 121 HLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLH 180

Query: 181 ANCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
            NCPA+I       G   GPA+K++ VQ C VD+
Sbjct: 181 VNCPAFITVTGKLTGT--GPAIKYQLVQRCAVDV 210

[Close]
BLAST of CmoCh13G003670 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 204.5 bits (519), Expect = 6.4e-53
Identity = 100/213 (46.95%), Postives = 142/213 (66.67%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MT KDC  H  H    R++   +   I  ++LLI +VI L+WAIL+PSKPR +LQD TVF
Sbjct: 1   MTSKDCGSHDSHSSCNRKI---VIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVF 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS  PP  +++  Q T+SS NPN +IG+YY  +DVYA+YR QQ+TLP+ +  TYQGH
Sbjct: 61  NFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            +V +WSPF+ G +VPVAP  A  L++D++ GA++  + ++G+VRWKVGS+I+G+Y L+ 
Sbjct: 121 KEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
            C A I FG    G+  G   K+   + C V +
Sbjct: 181 RCHALINFGSSAAGVIVG---KYMLTETCSVSV 207

[Close]
BLAST of CmoCh13G003670 vs. TAIR10
Match: AT3G52470.1 (AT3G52470.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 189.9 bits (481), Expect = 1.6e-48
Identity = 92/211 (43.60%), Postives = 137/211 (64.93%), Query Frame = 1 

Query: 4   KDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLN 63
           KDC +H      +  + R++  AI   I+++ + IFL+W ILRP+KPR +LQD TV+  N
Sbjct: 3   KDCGNHGGG---KEVVVRKLCAAIIAFIVIVLITIFLVWVILRPTKPRFVLQDATVYAFN 62

Query: 64  VSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
           +S   P  +++  QVTI+S NPNS+IG+YY  + VYA Y  QQ+TL T +PPTYQGH +V
Sbjct: 63  LSQ--PNLLTSNFQVTIASRNPNSKIGIYYDRLHVYATYMNQQITLRTAIPPTYQGHKEV 122

Query: 124 TIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANCP 183
            +WSPF+YG AVP+AP  + AL E+ + G +   I+ +G VRWKV + I+G+Y ++  C 
Sbjct: 123 NVWSPFVYGTAVPIAPYNSVALGEEKDRGFVGLMIRADGTVRWKVRTLITGKYHIHVRCQ 182

Query: 184 AYIKFGDPKNGIAFGP-AMKFRFVQGCYVDI 214
           A+I  G+   G+  G  A+K+     C V++
Sbjct: 183 AFINLGNKAAGVLVGDNAVKYTLANKCSVNV 208

[Close]
BLAST of CmoCh13G003670 vs. NCBI nr
Match: gi|449443654|ref|XP_004139592.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 426.4 bits (1095), Expect = 2.9e-116
Identity = 201/213 (94.37%), Postives = 209/213 (98.12%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHH CERRRLYRRIAC IFTV+LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
           NDVT+WSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]
BLAST of CmoCh13G003670 vs. NCBI nr
Match: gi|659127309|ref|XP_008463636.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 421.8 bits (1083), Expect = 7.2e-115
Identity = 198/213 (92.96%), Postives = 208/213 (97.65%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           MTVKDCDHHHHH CERRRLYRRIAC IF+++LLI LVIFLIWAILRPSKPRLILQDVT+ 
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFSLLLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQ+TISSHNPN+RIGVYYQ+MDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
           NDVT+WSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIK+NGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGP MKF+FVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]
BLAST of CmoCh13G003670 vs. NCBI nr
Match: gi|449444813|ref|XP_004140168.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 2.6e-72
Identity = 131/210 (62.38%), Postives = 164/210 (78.10%), Query Frame = 1 

Query: 4   KDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLN 63
           KDC HH   +   ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVFGLN
Sbjct: 7   KDCGHHEDDY---QQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANCP 183
            +WSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WISGRY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           A+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]
BLAST of CmoCh13G003670 vs. NCBI nr
Match: gi|659097380|ref|XP_008449594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 2.2e-71
Identity = 130/210 (61.90%), Postives = 163/210 (77.62%), Query Frame = 1 

Query: 4   KDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVFGLN 63
           KDC H   +    ++  RR+   +  +I+++ ++IF++WA+LRPSKP  ILQDVTVFGLN
Sbjct: 7   KDCGHDDDY----QQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +QVTISS NPN RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNANCP 183
            +WSPFL G+AVPVAP+ A +L +D NVGA+LFN+KI+GQV+WKVG+WISGRY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           A+IKFG+P   IA G AMKF+ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]
BLAST of CmoCh13G003670 vs. NCBI nr
Match: gi|661889271|emb|CDP06858.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 260.8 bits (665), Expect = 2.1e-66
Identity = 117/213 (54.93%), Postives = 159/213 (74.65%), Query Frame = 1 

Query: 1   MTVKDCDHHHHHHCERRRLYRRIACAIFTVILLISLVIFLIWAILRPSKPRLILQDVTVF 60
           M+ KDC H+ H   E+R+L+RR+  A+   I+LI  +I L+W ILRP+KP  +LQD TV+
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQVTISSHNPNSRIGVYYQIMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  Q+T+SS NPN RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTIWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKINGQVRWKVGSWISGRYRLNA 180
            D+T+WSPFLYG +VP+AP + +AL +D   G +L NIK+NG+VRWKVG++ISGRY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFRFVQGCYVDI 214
           NCPAYI  G+  +GI  GPA+K++ VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

The following BLAST results are available for this feature:
BLAST of CmoCh13G003670 vs. Swiss-Prot
Match NameE-valueIdentityDescription
NHL12_ARATH3.8e-4744.39NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1[more]
YLS9_ARATH9.7e-1126.75Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1[more]
BLAST of CmoCh13G003670 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LVW5_CUCSA2.0e-11694.37Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1[more]
A0A0A0KI64_CUCSA1.8e-7262.38Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1[more]
A0A068UGU2_COFCA1.5e-6654.93Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1[more]
A0A0D2QBT8_GOSRA9.6e-6655.40Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1[more]
V4RS29_9ROSI3.7e-6555.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1[more]
BLAST of CmoCh13G003670 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G44220.12.3e-6353.52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G11660.12.6e-6252.36 NDR1/HIN1-like 1[more]
AT5G22200.11.2e-5953.27 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT5G06330.16.4e-5346.95 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
AT3G52470.11.6e-4843.60 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f... [more]
BLAST of CmoCh13G003670 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443654|ref|XP_004139592.1|2.9e-11694.37PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659127309|ref|XP_008463636.1|7.2e-11592.96PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|449444813|ref|XP_004140168.1|2.6e-7262.38PREDICTED: protein YLS9-like [Cucumis sativus][more]
gi|659097380|ref|XP_008449594.1|2.2e-7161.90PREDICTED: protein YLS9-like [Cucumis melo][more]
gi|661889271|emb|CDP06858.1|2.1e-6654.93unnamed protein product [Coffea canephora][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004864LEA_2
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003670.1CmoCh13G003670.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004864Late embryogenesis abundant protein, LEA-14PFAMPF03168LEA_2coord: 79..182
score: 1.5
NoneNo IPR availablePANTHERPTHR31415FAMILY NOT NAMEDcoord: 7..213
score: 2.6E
NoneNo IPR availablePANTHERPTHR31415:SF17LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEINcoord: 7..213
score: 2.6E