CSPI01G15080 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G15080
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Chr1 : 10694747 .. 10695969 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAACTATAGACCCAAAAGAAATATATGTTTTTCAAACTCTTGACTTTACACACATCTCCATCCATTCAACCCTCTCTCTCTTTCTCTTCTATCTCTAGCAACAATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCTCGTCAGTGCCACCAGCCGCAATCTCGACAACCATGCAAATCACCATCTCCTCCCACAACCCCAACAACCGCATTGGTGTTTACTATCAGGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTTGTTTATTTTCTACTCTCTGACTCACAAGTTCTTTATCTTTCTTTACATACCTTTTTCATAGCTTAACTTCTCATTTTAAATTTTAATTATATACACATATTTTGTTATTTTAAAGCATAAAGCACTTAGGCTTTTAATCCTGGTAATGGAAGGTTTGAATCCTTCGTATCCTATTGTTGTATCTTTTGAGTCAATTCAAATTATTAAAATTGGCGTTCCAAATACTTATGGGAGGATTTAAATCTTTCTAACCTGGTCAGATGACATAAAGTTGAACTTTCGTCAAGTTAACATAAGAAGAGAAATTCGAAGAAAAGAAAGAAGTTGCATCTCTTGTTTGTAATTTAATATTTATTGTAGACTTTATCGTCGTATTGCACAACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGTAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGAGATCTCTCAAAGTCCCCTTTATTTGTACTTCTTTTTCTTTTTCCATGTTCCTTAAAAAGTATCTGTTAACGTAGTTGCCAACAGC

mRNA sequence

ATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCTCGTCAGTGCCACCAGCCGCAATCTCGACAACCATGCAAATCACCATCTCCTCCCACAACCCCAACAACCGCATTGGTGTTTACTATCAGGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGTAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGA

Coding sequence (CDS)

ATGACGGTAAAGGATTGCGACCACCACCACCATCACGACTGCGAGCGCCGCCGTCTCTACCGGCGAATAGCCTGTGTCATCTTCACCGTGGTGCTTCTAATTGGCCTAGTCATCTTCCTCATCTGGGCCATCCTCCGACCGTCGAAGCCCCGTCTCATCCTCCAAGACGTCACCCTTCTTGGCCTTAATGTCTCGTCAGTGCCACCAGCCGCAATCTCGACAACCATGCAAATCACCATCTCCTCCCACAACCCCAACAACCGCATTGGTGTTTACTATCAGGTCATGGATGTCTACGCCGCGTACCGCGGCCAGCAAGTCACTCTCCCGACGCTCTTGCCGCCTACTTACCAGGGCCACAATGATGTTACTGTTTGGTCGCCGTTTTTGTATGGCGAAGCTGTGCCGGTGGCACCGGAATTTGCTGAAGCTTTGAATGAAGATAACAATGTTGGAGCCATGCTGTTCAATATTAAGGTCAATGGACAGGTTAGATGGAAAGTCGGGAGCTGGATTTCGGGTAGATATCGGCTAAACGCGAACTGCCCGGCGTATATAAAGTTTGGTGATCCAAAGAATGGAATTGCTTTCGGACCCGCCATGAAGTTTCAGTTCGTTCAGGGCTGTTATGTTGATATTTGA

Homology

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BLAST of CSPI01G15080 vs. Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-47
Identity = 95/214 (44.39%), Postives = 136/214 (63.55%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MT KDC +H            RI  VI   ++++ + IFL+W IL+P+KPR ILQD T+ 
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  QITI+S N N+RIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+G+Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

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BLAST of CSPI01G15080 vs. Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.0e-12
Identity = 45/158 (28.48%), Postives = 82/158 (51.90%), Query Frame = 1


Query: 26  VIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLLGLNVSSVPPAAISTTMQITISSHNP 85
           VI ++++++G+   + W I+RP   +  + D +L   + +S P   +   + +T+   NP
Sbjct: 44  VIISLIVILGVAALIFWLIVRPRAIKFHVTDASLTRFDHTS-PDNILRYNLALTVPVRNP 103

Query: 86  NNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYGEAVPV-APEFAEA 145
           N RIG+YY  ++ +A Y G++ +  T L P YQGH + TV +P   G+ + +     +  
Sbjct: 104 NKRIGLYYDRIEAHAYYEGKRFSTIT-LTPFYQGHKNTTVLTPTFQGQNLVIFNAGQSRT 163

Query: 146 LNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANC 183
           LN +   G     IK   +VR+K+G     R +   +C
Sbjct: 164 LNAERISGVYNIEIKFRLRVRFKLGDLKFRRIKPKVDC 199

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BLAST of CSPI01G15080 vs. Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.4e-11
Identity = 47/176 (26.70%), Postives = 81/176 (46.02%), Query Frame = 1


Query: 26  VIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLLGLNVSSVPPAAISTTMQITISSHNP 85
           ++ T+ +L+G+   +IW I RP+  +  + D  L    +   P   +   + +  +  NP
Sbjct: 51  ILITIAVLLGIAALIIWLIFRPNAIKFHVTDAKLTEFTLD--PTNNLRYNLDLNFTIRNP 110

Query: 86  NNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGHNDVTVWSPFLYG-EAVPVAPEFAEA 145
           N RIGVYY  ++V   Y  Q+  +   +   YQGH + TV    L G + V +     + 
Sbjct: 111 NRRIGVYYDEIEVRGYYGDQRFGMSNNISKFYQGHKNTTVVGTKLVGQQLVLLDGGERKD 170

Query: 146 LNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANCPAYIKF-GDPKNGIAFGP 200
           LNED N      + K+  ++R+K G   S R++    C   +    +  +G  F P
Sbjct: 171 LNEDVNSQIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFVFQP 224

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BLAST of CSPI01G15080 vs. TrEMBL
Match: A0A0A0LVW5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1)

HSP 1 Score: 442.2 bits (1136), Expect = 3.6e-121
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

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BLAST of CSPI01G15080 vs. TrEMBL
Match: A0A0A0KI64_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 9.6e-74
Identity = 130/213 (61.03%), Postives = 168/213 (78.87%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KD     HH+ + ++  RR+  V+  +++++G++IF++WA+LRPSKP  ILQDVT+ 
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +Q+TISS NPN+RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPA+IKFG+P   IA G AMKFQ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

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BLAST of CSPI01G15080 vs. TrEMBL
Match: A0A0D2QBT8_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 1.9e-66
Identity = 122/213 (57.28%), Postives = 158/213 (74.18%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KDC HH     +  +L +RI   I  V +++G++IFL+WAIL P KPR ILQDVT+ 
Sbjct: 1   MSAKDCGHHD----DEEQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+++  P  +++ MQIT+SS NPN+RIG+YYQ +D++A+Y  QQ+TLPTL+P TYQGH
Sbjct: 61  AFNLTA--PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DVTVWSPFLYG AVPVAP   E L++D N G +L NIKV GQ++WKVG+WISGRY++NA
Sbjct: 121 LDVTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYI F D    I  G AMK+Q VQ C VD+
Sbjct: 181 NCPAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

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BLAST of CSPI01G15080 vs. TrEMBL
Match: A0A068UGU2_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 5.7e-66
Identity = 118/213 (55.40%), Postives = 158/213 (74.18%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KDC H+ H   E+R+L+RR+   +   ++LI  +I L+W ILRP+KP  +LQD T+ 
Sbjct: 1   MSAKDCGHYEH---EQRKLFRRLFVALLAFIILILFIILLVWLILRPTKPHFLLQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS+  P  +++  QIT+SS NPN+RIG+ Y  +D YA+YRGQQ+TLPTLLP TYQGH
Sbjct: 61  AFNVSA--PNLLTSNFQITLSSRNPNDRIGISYDRLDAYASYRGQQITLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            D+TVWSPFLYG +VP+AP + +AL +D   G +L NIKVNG+VRWKVG++ISGRY L  
Sbjct: 121 KDITVWSPFLYGNSVPIAPYYTDALTQDQFAGTVLINIKVNGRVRWKVGTFISGRYHLYV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYI  G+  +GI  GPA+K+Q VQ C+VD+
Sbjct: 181 NCPAYINLGNRNSGIMVGPAIKYQLVQSCHVDV 208

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BLAST of CSPI01G15080 vs. TrEMBL
Match: V4RS29_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 2.8e-65
Identity = 120/215 (55.81%), Postives = 160/215 (74.42%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KDC H H    ++++L R I   +  +++++ L+IFL WAI RPSKP  ILQD TL 
Sbjct: 1   MSEKDCGHSHD---DKKKLVRLILYAVGGLIIVVLLIIFLFWAITRPSKPSFILQDATLY 60

Query: 61  GLNVSS--VPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQ 120
             N+S+   PP A++T +Q+TI++ NPN++IG+YYQ  DVYA+YR QQ++L TLLP TYQ
Sbjct: 61  AFNLSTGPSPPNALTTNLQVTITTRNPNDKIGIYYQKADVYASYRNQQISLATLLPATYQ 120

Query: 121 GHNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRL 180
           GH DV VWSPFLYG +VPV+P  AEAL +D N G ++ NIKV+G+++WKVG+WISGRY L
Sbjct: 121 GHKDVIVWSPFLYGNSVPVSPFVAEALGQDLNAGMVMVNIKVDGRIKWKVGTWISGRYHL 180

Query: 181 NANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           + NCPAYI FGD   GIA G ++KFQ VQ C VD+
Sbjct: 181 HVNCPAYITFGDKSKGIASGASVKFQLVQSCSVDV 212

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BLAST of CSPI01G15080 vs. TAIR10
Match: AT3G44220.1 (AT3G44220.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 238.8 bits (608), Expect = 3.1e-63
Identity = 112/213 (52.58%), Postives = 152/213 (71.36%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MT K+C+HHH  D    ++ +RI  ++   +  +  V+FL+WAIL P  PR +LQD T+ 
Sbjct: 1   MTEKECEHHHDED---EKMRKRIGALVLGFLAAVLFVVFLVWAILHPHGPRFVLQDATIY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS   P  +++ +Q+T+SS NPN++IG++Y  +D+YA+YR QQVTL TLLP TYQGH
Sbjct: 61  AFNVSQ--PNYLTSNLQVTLSSRNPNDKIGIFYDRLDIYASYRNQQVTLATLLPATYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DVT+WSPFLYG  VPVAP F+ AL++D   G +L NIK++G VRWKVG+W+SGRYRL+ 
Sbjct: 121 LDVTIWSPFLYGTTVPVAPYFSPALSQDLTAGMVLLNIKIDGWVRWKVGTWVSGRYRLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYI      +G   GPA+K+Q VQ C VD+
Sbjct: 181 NCPAYITLAGHFSG--DGPAVKYQLVQRCAVDV 206

[Close]

BLAST of CSPI01G15080 vs. TAIR10
Match: AT3G11660.1 (AT3G11660.1 NDR1/HIN1-like 1)

HSP 1 Score: 233.8 bits (595), Expect = 9.9e-62
Identity = 111/212 (52.36%), Postives = 149/212 (70.28%), Query Frame = 1


Query: 3   VKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLLGL 62
           +KDC++H H    RR+L RRI   I  V+ +I L I LIWAIL+PSKPR ILQD T+   
Sbjct: 1   MKDCENHGH---SRRKLIRRIFWSIIFVLFIIFLTILLIWAILQPSKPRFILQDATVYAF 60

Query: 63  NVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGHND 122
           NVS  PP  +++  QIT+SS NPNN+IG+YY  +DVYA YR QQ+T PT +PPTYQGH D
Sbjct: 61  NVSGNPPNLLTSNFQITLSSRNPNNKIGIYYDRLDVYATYRSQQITFPTSIPPTYQGHKD 120

Query: 123 VTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANC 182
           V +WSPF+YG +VP+AP    +L+ D + G +L  I+ +G+VRWKVG++I+G+Y L+  C
Sbjct: 121 VDIWSPFVYGTSVPIAPFNGVSLDTDKDNGVVLLIIRADGRVRWKVGTFITGKYHLHVKC 180

Query: 183 PAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 214
           PAYI FG+  NG+  G  A+K+ F   C V +
Sbjct: 181 PAYINFGNKANGVIVGDNAVKYTFTTSCSVSV 209

[Close]

BLAST of CSPI01G15080 vs. TAIR10
Match: AT5G22200.1 (AT5G22200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 227.6 bits (579), Expect = 7.1e-60
Identity = 112/214 (52.34%), Postives = 148/214 (69.16%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLY-RRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTL 60
           MT + CD H+ ++  R R+  RRIA     +++ +  V+FL+WAIL P  PR +LQDVT+
Sbjct: 1   MTGRYCDQHNGYEERRMRMMMRRIAWACLGLIVAVAFVVFLVWAILHPHGPRFVLQDVTI 60

Query: 61  LGLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQG 120
              NVS   P  +S+ +Q+T+SS NPN++IG++Y  +D+Y  YR Q+VTL  LLP TYQG
Sbjct: 61  NDFNVSQ--PNFLSSNLQVTVSSRNPNDKIGIFYDRLDIYVTYRNQEVTLARLLPSTYQG 120

Query: 121 HNDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLN 180
           H +VTVWSPFL G AVPVAP  + ALNED   G +L NIK++G VRWKVGSW+SG YRL+
Sbjct: 121 HLEVTVWSPFLIGSAVPVAPYLSSALNEDLFAGLVLLNIKIDGWVRWKVGSWVSGSYRLH 180

Query: 181 ANCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
            NCPA+I       G   GPA+K+Q VQ C VD+
Sbjct: 181 VNCPAFITVTGKLTGT--GPAIKYQLVQRCAVDV 210

[Close]

BLAST of CSPI01G15080 vs. TAIR10
Match: AT5G06330.1 (AT5G06330.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 202.6 bits (514), Expect = 2.4e-52
Identity = 99/213 (46.48%), Postives = 142/213 (66.67%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MT KDC  H  H    R++   +   I  ++LLI +VI L+WAIL+PSKPR +LQD T+ 
Sbjct: 1   MTSKDCGSHDSHSSCNRKI---VIWTISIILLLILVVILLVWAILQPSKPRFVLQDATVF 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             NVS  PP  +++  Q T+SS NPN++IG+YY  +DVYA+YR QQ+TLP+ +  TYQGH
Sbjct: 61  NFNVSGNPPNLLTSNFQFTLSSRNPNDKIGIYYDRLDVYASYRSQQITLPSPMLTTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +V VWSPF+ G +VPVAP  A  L++D++ GA++  + ++G+VRWKVGS+I+G+Y L+ 
Sbjct: 121 KEVNVWSPFVGGYSVPVAPYNAFYLDQDHSSGAIMLMLHLDGRVRWKVGSFITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
            C A I FG    G+  G   K+   + C V +
Sbjct: 181 RCHALINFGSSAAGVIVG---KYMLTETCSVSV 207

[Close]

BLAST of CSPI01G15080 vs. TAIR10
Match: AT2G35960.1 (AT2G35960.1 NDR1/HIN1-like 12)

HSP 1 Score: 189.1 bits (479), Expect = 2.8e-48
Identity = 95/214 (44.39%), Postives = 136/214 (63.55%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MT KDC +H            RI  VI   ++++ + IFL+W IL+P+KPR ILQD T+ 
Sbjct: 1   MTTKDCGNHGGGGGGGTA--SRICGVIIGFIIIVLITIFLVWIILQPTKPRFILQDATVY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+S   P  +++  QITI+S N N+RIG+YY  + VYA YR QQ+TL T +PPTYQGH
Sbjct: 61  AFNLSQ--PNLLTSNFQITIASRNRNSRIGIYYDRLHVYATYRNQQITLRTAIPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            +  VWSPF+YG +VP+AP  A AL ++ N G +   I+ +G+VRWKVG+ I+G+Y L+ 
Sbjct: 121 KEDNVWSPFVYGNSVPIAPFNAVALGDEQNRGFVTLIIRADGRVRWKVGTLITGKYHLHV 180

Query: 181 NCPAYIKFGDPKNGIAFGP-AMKFQFVQGCYVDI 214
            C A+I   D   G+  G  A+K+  +  C V++
Sbjct: 181 RCQAFINLADKAAGVHVGENAVKYMLINKCSVNV 210

[Close]

BLAST of CSPI01G15080 vs. NCBI nr
Match: gi|449443654|ref|XP_004139592.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 442.2 bits (1136), Expect = 5.2e-121
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 213

[Close]

BLAST of CSPI01G15080 vs. NCBI nr
Match: gi|659127309|ref|XP_008463636.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 434.5 bits (1116), Expect = 1.1e-118
Identity = 208/213 (97.65%), Postives = 211/213 (99.06%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           MTVKDCDHHHHHDCERRRLYRRIACVIF+++LLIGLVIFLIWAILRPSKPRLILQDVTLL
Sbjct: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFSLLLLIGLVIFLIWAILRPSKPRLILQDVTLL 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLNVSSVPPAAISTTMQITISSHNPN RIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH
Sbjct: 61  GLNVSSVPPAAISTTMQITISSHNPNTRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
           NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA
Sbjct: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYIKFGDPKNGIAFGP MKFQFVQGCYVDI
Sbjct: 181 NCPAYIKFGDPKNGIAFGPTMKFQFVQGCYVDI 213

[Close]

BLAST of CSPI01G15080 vs. NCBI nr
Match: gi|449444813|ref|XP_004140168.1| (PREDICTED: protein YLS9-like [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.4e-73
Identity = 130/213 (61.03%), Postives = 168/213 (78.87%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KD     HH+ + ++  RR+  V+  +++++G++IF++WA+LRPSKP  ILQDVT+ 
Sbjct: 1   MSAKDDKDCGHHEDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVF 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
           GLN +SV P  +S  +Q+TISS NPN+RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH
Sbjct: 61  GLN-ASVTPNLLSLDLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DV VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN 
Sbjct: 121 RDVVVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNV 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPA+IKFG+P   IA G AMKFQ VQ C V++
Sbjct: 181 NCPAFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 212

[Close]

BLAST of CSPI01G15080 vs. NCBI nr
Match: gi|659097380|ref|XP_008449594.1| (PREDICTED: protein YLS9-like [Cucumis melo])

HSP 1 Score: 283.1 bits (723), Expect = 4.0e-73
Identity = 130/210 (61.90%), Postives = 166/210 (79.05%), Query Frame = 1


Query: 4   KDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLLGLN 63
           KDC H    D + ++  RR+  V+  +++++G++IF++WA+LRPSKP  ILQDVT+ GLN
Sbjct: 7   KDCGH----DDDYQQFLRRLGIVLLILIIIVGIIIFIVWAVLRPSKPHFILQDVTVFGLN 66

Query: 64  VSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGHNDV 123
            +SV P  +S  +Q+TISS NPN+RIG+YY  MDVY AYRGQQVTLPTLLP TYQGH DV
Sbjct: 67  -ASVSPNLLSLNLQVTISSRNPNDRIGIYYLTMDVYGAYRGQQVTLPTLLPSTYQGHRDV 126

Query: 124 TVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNANCP 183
            VWSPFL G+AVPVAP+ A +L +D NVGA+LFN+K++GQV+WKVG+WISGRY LN NCP
Sbjct: 127 VVWSPFLSGDAVPVAPDVAMSLQQDRNVGAVLFNVKIDGQVKWKVGTWISGRYHLNVNCP 186

Query: 184 AYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           A+IKFG+P   IA G AMKFQ VQ C V++
Sbjct: 187 AFIKFGNPDRAIAIGSAMKFQIVQSCNVEV 211

[Close]

BLAST of CSPI01G15080 vs. NCBI nr
Match: gi|823230872|ref|XP_012448156.1| (PREDICTED: protein YLS9 [Gossypium raimondii])

HSP 1 Score: 260.4 bits (664), Expect = 2.8e-66
Identity = 122/213 (57.28%), Postives = 158/213 (74.18%), Query Frame = 1


Query: 1   MTVKDCDHHHHHDCERRRLYRRIACVIFTVVLLIGLVIFLIWAILRPSKPRLILQDVTLL 60
           M+ KDC HH     +  +L +RI   I  V +++G++IFL+WAIL P KPR ILQDVT+ 
Sbjct: 1   MSAKDCGHHD----DEEQLAKRITVAIVGVFVVVGIIIFLVWAILHPDKPRFILQDVTIY 60

Query: 61  GLNVSSVPPAAISTTMQITISSHNPNNRIGVYYQVMDVYAAYRGQQVTLPTLLPPTYQGH 120
             N+++  P  +++ MQIT+SS NPN+RIG+YYQ +D++A+Y  QQ+TLPTL+P TYQGH
Sbjct: 61  AFNLTA--PNMLTSNMQITLSSRNPNDRIGIYYQKLDIFASYHNQQITLPTLVPRTYQGH 120

Query: 121 NDVTVWSPFLYGEAVPVAPEFAEALNEDNNVGAMLFNIKVNGQVRWKVGSWISGRYRLNA 180
            DVTVWSPFLYG AVPVAP   E L++D N G +L NIKV GQ++WKVG+WISGRY++NA
Sbjct: 121 LDVTVWSPFLYGNAVPVAPFLEEGLSQDMNTGMVLLNIKVYGQLKWKVGTWISGRYQINA 180

Query: 181 NCPAYIKFGDPKNGIAFGPAMKFQFVQGCYVDI 214
           NCPAYI F D    I  G AMK+Q VQ C VD+
Sbjct: 181 NCPAYISFTDRTKAIQVGSAMKYQLVQTCTVDV 207

The following BLAST results are available for this feature:

BLAST of CSPI01G15080 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NHL12_ARATH	5.0e-47	44.39	NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1	[more]
YLS9_ARATH	4.0e-12	28.48	Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1	[more]
NHL3_ARATH	4.4e-11	26.70	NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1	[more]

BLAST of CSPI01G15080 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVW5_CUCSA	3.6e-121	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G169420 PE=4 SV=1	[more]
A0A0A0KI64_CUCSA	9.6e-74	61.03	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G425840 PE=4 SV=1	[more]
A0A0D2QBT8_GOSRA	1.9e-66	57.28	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G083100 PE=4 SV=1	[more]
A0A068UGU2_COFCA	5.7e-66	55.40	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00023887001 PE=4 SV=1	[more]
V4RS29_9ROSI	2.8e-65	55.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029271mg PE=4 SV=1	[more]

BLAST of CSPI01G15080 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G44220.1	3.1e-63	52.58	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT3G11660.1	9.9e-62	52.36	NDR1/HIN1-like 1	[more]
AT5G22200.1	7.1e-60	52.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT5G06330.1	2.4e-52	46.48	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G35960.1	2.8e-48	44.39	NDR1/HIN1-like 12	[more]

BLAST of CSPI01G15080 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443654\|ref\|XP_004139592.1\|	5.2e-121	100.00	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659127309\|ref\|XP_008463636.1\|	1.1e-118	97.65	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|449444813\|ref\|XP_004140168.1\|	1.4e-73	61.03	PREDICTED: protein YLS9-like [Cucumis sativus]	[more]
gi\|659097380\|ref\|XP_008449594.1\|	4.0e-73	61.90	PREDICTED: protein YLS9-like [Cucumis melo]	[more]
gi\|823230872\|ref\|XP_012448156.1\|	2.8e-66	57.28	PREDICTED: protein YLS9 [Gossypium raimondii]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G15080.1	CSPI01G15080.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 79..182 score: 1.3
None	No IPR available	PANTHER	PTHR31415	FAMILY NOT NAMED	coord: 1..213 score: 2.3
None	No IPR available	PANTHER	PTHR31415:SF17	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..213 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G15080	Cla008622	Watermelon (97103) v1	cpiwmB070
CSPI01G15080	Cla017636	Watermelon (97103) v1	cpiwmB008
CSPI01G15080	Cla011041	Watermelon (97103) v1	cpiwmB044
CSPI01G15080	Csa1G169420	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G15080	MELO3C025577	Melon (DHL92) v3.5.1	cpimeB030
CSPI01G15080	MELO3C009532	Melon (DHL92) v3.5.1	cpimeB067
CSPI01G15080	ClCG01G011600	Watermelon (Charleston Gray)	cpiwcgB025
CSPI01G15080	ClCG02G022400	Watermelon (Charleston Gray)	cpiwcgB031
CSPI01G15080	Lsi02G011930	Bottle gourd (USVL1VR-Ls)	cpilsiB033
CSPI01G15080	Lsi10G011400	Bottle gourd (USVL1VR-Ls)	cpilsiB006
CSPI01G15080	Lsi03G018290	Bottle gourd (USVL1VR-Ls)	cpilsiB049
CSPI01G15080	Lsi01G011860	Bottle gourd (USVL1VR-Ls)	cpilsiB020
CSPI01G15080	MELO3C009532.2	Melon (DHL92) v3.6.1	cpimedB061
CSPI01G15080	MELO3C025577.2	Melon (DHL92) v3.6.1	cpimedB011
CSPI01G15080	MELO3C024583.2	Melon (DHL92) v3.6.1	cpimedB077
CSPI01G15080	CsaV3_1G015180	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G15080	CsaV3_UNG232230	Cucumber (Chinese Long) v3	cpicucB018
CSPI01G15080	Cla97C01G011240	Watermelon (97103) v2	cpiwmbB009
CSPI01G15080	Cla97C10G201390	Watermelon (97103) v2	cpiwmbB018
CSPI01G15080	Cla97C02G048480	Watermelon (97103) v2	cpiwmbB026
CSPI01G15080	BhiUN452G21	Wax gourd	cpiwgoB068
CSPI01G15080	Cucsa.319610	Cucumber (Gy14) v1	cgycpiB482
CSPI01G15080	Cucsa.241750	Cucumber (Gy14) v1	cgycpiB358
CSPI01G15080	CmaCh13G003440	Cucurbita maxima (Rimu)	cmacpiB222
CSPI01G15080	CmoCh13G003670	Cucurbita moschata (Rifu)	cmocpiB208
CSPI01G15080	CmoCh06G005180	Cucurbita moschata (Rifu)	cmocpiB810
CSPI01G15080	Cp4.1LG00g01670	Cucurbita pepo (Zucchini)	cpecpiB002
CSPI01G15080	CsGy1G014860	Cucumber (Gy14) v2	cgybcpiB001

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CSPI01G15080	CSPI03G35550	Wild cucumber (PI 183967)	cpicpiB015

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G15080	Cucurbita maxima (Rimu)	cmacpiB403
CSPI01G15080	Melon (DHL92) v3.5.1	cpimeB017
CSPI01G15080	Cucurbita pepo (Zucchini)	cpecpiB017
CSPI01G15080	Silver-seed gourd	carcpiB0000
CSPI01G15080	Cucumber (Chinese Long) v3	cpicucB030