Lsi02G000200 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi02G000200
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionMYB transcription factor
Locationchr02 : 263803 .. 264809 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTTGTTATTATTTGTAAAATCAAAATAATTAGATCGGATTAGGGTTTTAGGATAATGTGCAGCAGAGGGCATTGGCGGCCTGCTGAAGACGAGAAGCTTCGAGAGCTGGTTGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTGAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAATTGGATCCACGAATCAACAGAAGCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACATAGGGTTCATGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAATTAATAGATCCAAAACCCAAACCCAAACTCAAACTCCATCTTCTTTTCACAATAATCGCCTTCTTCTTTCTTCTTTTCTCCAACTCCATACATATCATCCCACTTCTAATTCATTCATCCCCAAACCACCACCTGGTAATTAATTTTATTCTATTCTTTCTTTTTTTATATGTAATTATAATTATATATATATTATGTTTCCTTATAATTATATATATATTATGTGTGTGCAGATGATAGAGTACATACGAATTCCATTCATTATTACGACTTTCTCCACATAAATACGGAGTCCATCAATGGAAGTGAAGTGATAGACAACTCAAGAAAAGAGGAGGATTATGAAGAGGTCAATGATCAAGAAGCCGCCGACACCGCCGGCCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAAACCTCCAACAACAACTCCATCTCATCCTAACATATATATATATATATATACATGCATATTATTAACCTCCTTTATCTTACATTTCATCTAACTCATTTGGGGCATCATCAAATCACACCCCGGCTACATATATACATACATGTAATCCATAAATATATTATAATTGTCATTTTGTACACACAATTTCAAACTTACATCACTTTTAGTATTTC

mRNA sequence

TTTTGTTATTATTTGTAAAATCAAAATAATTAGATCGGATTAGGGTTTTAGGATAATGTGCAGCAGAGGGCATTGGCGGCCTGCTGAAGACGAGAAGCTTCGAGAGCTGGTTGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTGAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAATTGGATCCACGAATCAACAGAAGCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACATAGGGTTCATGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAATTAATAGATCCAAAACCCAAACCCAAACTCAAACTCCATCTTCTTTTCACAATAATCGCCTTCTTCTTTCTTCTTTTCTCCAACTCCATACATATCATCCCACTTCTAATTCATTCATCCCCAAACCACCACCTGATGATAGAGTACATACGAATTCCATTCATTATTACGACTTTCTCCACATAAATACGGAGTCCATCAATGGAAGTGAAGTGATAGACAACTCAAGAAAAGAGGAGGATTATGAAGAGGTCAATGATCAAGAAGCCGCCGACACCGCCGGCCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAAACCTCCAACAACAACTCCATCTCATCCTAACATATATATATATATATATACATGCATATTATTAACCTCCTTTATCTTACATTTCATCTAACTCATTTGGGGCATCATCAAATCACACCCCGGCTACATATATACATACATGTAATCCATAAATATATTATAATTGTCATTTTGTACACACAATTTCAAACTTACATCACTTTTAGTATTTC

Coding sequence (CDS)

ATGTGCAGCAGAGGGCATTGGCGGCCTGCTGAAGACGAGAAGCTTCGAGAGCTGGTTGAGCGTTACGGACCTCATAATTGGAACGCCATAGCTCAAAAGCTTGAAGGAAGATCCGGGAAGAGCTGCCGGTTGAGATGGTTCAATCAATTGGATCCACGAATCAACAGAAGCCCTTTCACGGAGGAGGAAGAAGAGAGGCTGATGGCCTCACATAGGGTTCATGGGAATAGATGGGCCATCATCGCAAGGCTTTTCCCTGGCCGCACCGACAACGCCGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAATTAATAGATCCAAAACCCAAACCCAAACTCAAACTCCATCTTCTTTTCACAATAATCGCCTTCTTCTTTCTTCTTTTCTCCAACTCCATACATATCATCCCACTTCTAATTCATTCATCCCCAAACCACCACCTGATGATAGAGTACATACGAATTCCATTCATTATTACGACTTTCTCCACATAAATACGGAGTCCATCAATGGAAGTGAAGTGATAGACAACTCAAGAAAAGAGGAGGATTATGAAGAGGTCAATGATCAAGAAGCCGCCGACACCGCCGGCCCGGTACTTCCCTTCATTGATTTCTTTTCTGCCTCCCAAACCTCCAACAACAACTCCATCTCATCCTAA

Protein sequence

MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPSSFHNNRLLLSSFLQLHTYHPTSNSFIPKPPPDDRVHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADTAGPVLPFIDFFSASQTSNNNSISS
Homology
[Close]
BLAST of Lsi02G000200 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 1.2e-30
Identity = 57/101 (56.44%), Postives = 73/101 (72.28%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W P EDE+LR LV +YGP NW  I++ + GRSGKSCRLRW NQL P++   PF+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           +E +  +H   GN+WA IARL  GRTDNAVKNHW+  + R+
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

[Close]
BLAST of Lsi02G000200 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.1e-28
Identity = 68/170 (40.00%), Postives = 97/170 (57.06%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR----SRINRSKTQTQTQTP 123
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+      +  S   +Q    
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVT 211

Query: 124 SSFHNNRLLLSSFLQLHTYHPTSNSFIPKPPPDDRVHTNSIHYYDFLHIN 170
           +SF  N     S L   T+ P S       PP  +   NS   Y + HI+
Sbjct: 212 TSFQKN-----SHLMGFTHAPPSAQL----PPAGQPSVNS--DYPYYHIS 250

[Close]
BLAST of Lsi02G000200 vs. Swiss-Prot
Match: MYB_MOUSE (Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2)

HSP 1 Score: 125.2 bits (313), Expect = 9.1e-28
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR----SRINRSKTQTQTQTP 123
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+      +      +QT   
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQTPVA 211

Query: 124 SSFHNNRLLL 130
           +SF  N  L+
Sbjct: 212 TSFQKNNHLM 221

[Close]
BLAST of Lsi02G000200 vs. Swiss-Prot
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.2e-27
Identity = 60/146 (41.10%), Postives = 88/146 (60.27%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV +YGP  W+ IA+ L+GR GK CR RW N L+P + +S +TEEE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-----INRSKTQTQTQT 123
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+        N SKT   T  
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKEEQEGYLQNSSKTNQHTIV 208

Query: 124 PSSFHNNRLLLSSFLQLHTYHPTSNS 145
            +   +N L+  +  +    H  +++
Sbjct: 209 TNFPKSNHLMTFTHTRASAEHSQAST 234

[Close]
BLAST of Lsi02G000200 vs. Swiss-Prot
Match: MYB_HUMAN (Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2)

HSP 1 Score: 124.4 bits (311), Expect = 1.6e-27
Identity = 57/130 (43.85%), Postives = 83/130 (63.85%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           +G W   ED+++ ELV++YGP  W+ IA+ L+GR GK CR RW N L+P + ++ +TEEE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR----SRINRSKTQTQTQTP 123
           +  +  +H+  GNRWA IA+L PGRTDNA+KNHW+  M R+      +  S   +Q    
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQESSKASQPAVA 211

Query: 124 SSFHNNRLLL 130
           +SF  N  L+
Sbjct: 212 TSFQKNSHLM 221

[Close]
BLAST of Lsi02G000200 vs. TrEMBL
Match: A0A0A0LPV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 7.4e-93
Identity = 185/236 (78.39%), Postives = 199/236 (84.32%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKL+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKTQT TQT +
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 SFH-----NNRLLLSSFLQLHTYHPTSN-SFIPKPPPDD-----RVHTNS--IHYYDFLH 180
             H     NNRLLLSSFLQLH Y PTSN SFIPKPPPDD       H++   IHYYDFL 
Sbjct: 121 QTHNNNNNNNRLLLSSFLQLHAY-PTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQ 180

Query: 181 IN-TESINGSEVIDNSRKEEDYEEVNDQEAADTAGPVLPFIDFFSASQTSNNNSIS 223
           +N T+S+NGSEVIDNS ++EDYEEVN+    +    +LPFIDFFSAS  SNN SIS
Sbjct: 181 VNSTDSMNGSEVIDNSSRKEDYEEVNNNNNGEQQAVLLPFIDFFSAS--SNNTSIS 232

[Close]
BLAST of Lsi02G000200 vs. TrEMBL
Match: A0A0E4B8Y8_9ROSI (MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB090 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.5e-64
Identity = 138/240 (57.50%), Postives = 169/240 (70.42%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKL+ELVE+YGPHNWNAIA+KL GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 2   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR----RSRINRSKTQTQT 120
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMAR    RSR++  +T    
Sbjct: 62  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQAL 121

Query: 121 QTPSSFHNNRLL--------LSSFLQLH-----TYHPTSNSFIP---------KPPPDDR 180
               +F + + +         SSF++ +      Y   ++S++P           P +  
Sbjct: 122 VNEQNFSSKQDMQINCETRSFSSFVKKYCEKFGQYPLITHSYLPAFWKEFYNGDDPSNCE 181

Query: 181 VHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEA--ADTAGPVLPFIDFFSA 213
               SI +YDFL +NT+S N SEVIDN+R+E+  EEV+ QE      +   +PFIDFFSA
Sbjct: 182 DQNRSIEFYDFLQVNTDS-NKSEVIDNARRED--EEVDQQEVILEHQSKTGVPFIDFFSA 238

[Close]
BLAST of Lsi02G000200 vs. TrEMBL
Match: B9I4W4_POPTR (MYB transcription factor OS=Populus trichocarpa GN=MYB167 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.9e-64
Identity = 139/247 (56.28%), Postives = 170/247 (68.83%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKL+ELVE+YGPHNWNAIA+KL+GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERL+ASHR+HGNRWAIIAR FPGRTDNAVKNHWHVIMARR R  RS+   +    +
Sbjct: 61  EEEEERLLASHRIHGNRWAIIARFFPGRTDNAVKNHWHVIMARRYR-ERSRLHAKRAAQT 120

Query: 121 SFHNNRLL--------------LSSF------------LQLHTYHPT-SNSFIPKPPPDD 180
             ++N+L                SSF            +  H+Y P     F  + P   
Sbjct: 121 LVNDNKLSSKQDHMHMDCETRNFSSFSKKYCEKYGQYPMVTHSYLPAFCKEFYNEDPSHC 180

Query: 181 RVHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADT--AGPVLPFIDFFS 219
              +  I +YDFL +NT+S N SEVIDN+R+++  EEV+ QEA +   +   +PFIDFFS
Sbjct: 181 EDQSRPIEFYDFLQVNTDS-NKSEVIDNARRDD--EEVDQQEALENNQSKADVPFIDFFS 240

[Close]
BLAST of Lsi02G000200 vs. TrEMBL
Match: A0A0H4CRL4_BETPL (MYB transcription factor 3 OS=Betula platyphylla GN=MYB3 PE=2 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 3.2e-64
Identity = 143/248 (57.66%), Postives = 168/248 (67.74%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIA+KL+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMARR R  RSK   +    +
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCR-ERSKLYAKRAAQT 120

Query: 121 SFHNNRL-----------------LLSSFL----QLHTYHPTSNS-------FIPKPPPD 180
             ++ +                  L+S F+    Q   Y  T N        F   P P 
Sbjct: 121 LMNDQQKTSLKQDVQVNCDQTRNDLISPFVEKYRQRFAYPFTYNCPQFPKEWFSQHPSPC 180

Query: 181 DRV---HTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADTAGPV-LPFID 217
             +       + +YDFL +NTES NGSEVIDN+R+EE  EEVN QEA +      +PFI+
Sbjct: 181 ITMLEEKKQPVEFYDFLQVNTES-NGSEVIDNARREE--EEVNQQEAMEQQNKAGVPFIE 240

[Close]
BLAST of Lsi02G000200 vs. TrEMBL
Match: A0A0F6UZP5_POPTO (MYB transcription factor R2R3 type OS=Populus tomentosa GN=Potri.015G033600 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 4.2e-64
Identity = 139/242 (57.44%), Postives = 169/242 (69.83%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKL+ELVE+YGPHNWNAIA+KL GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR----RSRINRSKTQTQT 120
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMAR    RSR++  +T    
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQAL 120

Query: 121 QTPSSFHNNRLL--------LSSFLQLH-----TYHPTSNSFIP---------KPPPDDR 180
               +F + + +         SSF++ +      Y   ++S++P           P +  
Sbjct: 121 VNEQNFSSKQDMQINCETRSFSSFVKKYCEKFGQYPLITHSYLPAFWKEFYNGDDPSNCE 180

Query: 181 VHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEA----ADTAGPVLPFIDFF 213
               SI +YDFL +NT+S N SEVIDN+R+E+  EEV+ QE        AG  +PF DFF
Sbjct: 181 DQNRSIEFYDFLQVNTDS-NKSEVIDNARRED--EEVDQQEVILEHQSKAG--VPFFDFF 237

[Close]
BLAST of Lsi02G000200 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 224.2 bits (570), Expect = 8.2e-59
Identity = 127/251 (50.60%), Postives = 159/251 (63.35%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR+R   SK +    T S
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTR-QTSKPRLLPSTTS 122

Query: 121 S---FHNNRLLLSSFLQLHTYHPTSNSFIPKPPPDDRV-------HTNSIH--------- 180
           S     + ++++SS    H Y   S+    K  P D +       H N +H         
Sbjct: 123 SSSLMASEQIMMSSGGYNHNY---SSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGK 182

Query: 181 ---------------YYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADTAGPVLPF 218
                          +Y+FL +NT+S N SE+ID    +    + + +  +      +PF
Sbjct: 183 IALNHKANQSKKPMEFYNFLQVNTDS-NKSEIIDQDSGQSKRSDSDTKHESH-----VPF 242

[Close]
BLAST of Lsi02G000200 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 219.2 bits (557), Expect = 2.6e-57
Identity = 99/111 (89.19%), Postives = 106/111 (95.50%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSK 112
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR R  RSK
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGR-ERSK 111

[Close]
BLAST of Lsi02G000200 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 194.1 bits (492), Expect = 9.0e-50
Identity = 93/160 (58.13%), Postives = 118/160 (73.75%), Query Frame = 1 

Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KL+GRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPSSFH 123
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+ R          +  S++ 
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYR----------EHSSAYR 217

Query: 124 NNRLLLSSFLQLHTYHPTSNSFIPKPPPDDRVHTNSIHYY 164
             +L+ ++ L+ H     +N+  P P P+     ++ HY+
Sbjct: 218 RRKLMSNNPLKPH----LTNNHHPNPNPNYHSFISTNHYF 243

[Close]
BLAST of Lsi02G000200 vs. TAIR10
Match: AT4G33450.1 (AT4G33450.1 myb domain protein 69)

HSP 1 Score: 191.4 bits (485), Expect = 5.9e-49
Identity = 92/138 (66.67%), Postives = 105/138 (76.09%), Query Frame = 1 

Query: 2   CSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTE 61
           C RGHWRP ED+ LR+LVE+YGP NWN IAQ L GRSGKSCRLRW+NQLDP I + PFTE
Sbjct: 17  CQRGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTE 76

Query: 62  EEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPSS 121
           EEEERL+ +HR+ GNRWA IARLFPGRTDNAVKNH+HVIMARR R N S T T T    +
Sbjct: 77  EEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARRKRENFSSTATSTFN-QT 136

Query: 122 FHNNRLLLSSFLQLHTYH 140
           +H      SS  +L+  H
Sbjct: 137 WHTVLSPSSSLTRLNRSH 153

[Close]
BLAST of Lsi02G000200 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 191.0 bits (484), Expect = 7.6e-49
Identity = 85/104 (81.73%), Postives = 95/104 (91.35%), Query Frame = 1 

Query: 3   SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFTEE 62
           SRGHWRPAED KL+ELV  YGP NWN IA+KL+GRSGKSCRLRWFNQLDPRINR  FTEE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR 107
           EEERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+ R
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFR 209

[Close]
BLAST of Lsi02G000200 vs. NCBI nr
Match: gi|778656646|ref|XP_011649446.1| (PREDICTED: transcriptional activator Myb-like [Cucumis sativus])

HSP 1 Score: 348.2 bits (892), Expect = 1.1e-92
Identity = 185/236 (78.39%), Postives = 199/236 (84.32%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKL+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKTQT TQT +
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 SFH-----NNRLLLSSFLQLHTYHPTSN-SFIPKPPPDD-----RVHTNS--IHYYDFLH 180
             H     NNRLLLSSFLQLH Y PTSN SFIPKPPPDD       H++   IHYYDFL 
Sbjct: 121 QTHNNNNNNNRLLLSSFLQLHAY-PTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQ 180

Query: 181 IN-TESINGSEVIDNSRKEEDYEEVNDQEAADTAGPVLPFIDFFSASQTSNNNSIS 223
           +N T+S+NGSEVIDNS ++EDYEEVN+    +    +LPFIDFFSAS  SNN SIS
Sbjct: 181 VNSTDSMNGSEVIDNSSRKEDYEEVNNNNNGEQQAVLLPFIDFFSAS--SNNTSIS 232

[Close]
BLAST of Lsi02G000200 vs. NCBI nr
Match: gi|659066257|ref|XP_008455801.1| (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 2.4e-89
Identity = 178/237 (75.11%), Postives = 196/237 (82.70%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKL+GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR N+SKTQT TQT +
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSR-NKSKTQTLTQTLT 120

Query: 121 SFHNN------RLLLSSFLQLHTYHPTSNSFIPKPPPDD-----RVHTNS--IHYYDFLH 180
             HNN      RLLLSSFLQLH Y  ++ SF+PKPP DD       H++   IHYYDFL 
Sbjct: 121 QTHNNNHNNNHRLLLSSFLQLHAYPTSTISFVPKPPSDDAAAAAAAHSSCSIIHYYDFLQ 180

Query: 181 IN-TESINGSEVIDNSRKEEDYEEV-NDQEAADTAGPVLPFIDFFSASQTSNNNSIS 223
           +N T+S NGSEVIDNS ++EDYEEV N+  + +    +LPFIDFFSAS  +N+ SIS
Sbjct: 181 VNSTDSTNGSEVIDNSSRKEDYEEVNNNNNSGEQQAVLLPFIDFFSAS--NNDTSIS 234

[Close]
BLAST of Lsi02G000200 vs. NCBI nr
Match: gi|803433984|dbj|BAR45576.1| (MYB transcriptional factor [Populus tremula x Populus tremuloides])

HSP 1 Score: 254.2 bits (648), Expect = 2.1e-64
Identity = 138/240 (57.50%), Postives = 169/240 (70.42%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKL+ELVE+YGPHNWNAIA+KL GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 2   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR----RSRINRSKTQTQT 120
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMAR    RSR++  +T    
Sbjct: 62  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQAL 121

Query: 121 QTPSSFHNNRLL--------LSSFLQLH-----TYHPTSNSFIP---------KPPPDDR 180
               +F + + +         SSF++ +      Y   ++S++P           P +  
Sbjct: 122 VNEQNFSSKQDMQINCETRSFSSFVKKYCEKFGQYPLITHSYLPAFWKEFYNGDDPSNCE 181

Query: 181 VHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEA--ADTAGPVLPFIDFFSA 213
               SI +YDFL +NT+S N SEVIDN+R+E+  EEV+ QE      +   +PFIDFFSA
Sbjct: 182 DQNRSIEFYDFLQVNTDS-NKSEVIDNARRED--EEVDQQEVILEHQSKTGVPFIDFFSA 238

[Close]
BLAST of Lsi02G000200 vs. NCBI nr
Match: gi|224120416|ref|XP_002318324.1| (MYB transcription factor R2R3 type family protein [Populus trichocarpa])

HSP 1 Score: 253.8 bits (647), Expect = 2.7e-64
Identity = 139/247 (56.28%), Postives = 170/247 (68.83%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKL+ELVE+YGPHNWNAIA+KL+GRSGKSCRLRWFNQLDPRINRSPFT
Sbjct: 1   MCTRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERL+ASHR+HGNRWAIIAR FPGRTDNAVKNHWHVIMARR R  RS+   +    +
Sbjct: 61  EEEEERLLASHRIHGNRWAIIARFFPGRTDNAVKNHWHVIMARRYR-ERSRLHAKRAAQT 120

Query: 121 SFHNNRLL--------------LSSF------------LQLHTYHPT-SNSFIPKPPPDD 180
             ++N+L                SSF            +  H+Y P     F  + P   
Sbjct: 121 LVNDNKLSSKQDHMHMDCETRNFSSFSKKYCEKYGQYPMVTHSYLPAFCKEFYNEDPSHC 180

Query: 181 RVHTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADT--AGPVLPFIDFFS 219
              +  I +YDFL +NT+S N SEVIDN+R+++  EEV+ QEA +   +   +PFIDFFS
Sbjct: 181 EDQSRPIEFYDFLQVNTDS-NKSEVIDNARRDD--EEVDQQEALENNQSKADVPFIDFFS 240

[Close]
BLAST of Lsi02G000200 vs. NCBI nr
Match: gi|854930073|gb|AKN79285.1| (MYB transcription factor 3 [Betula platyphylla])

HSP 1 Score: 253.1 bits (645), Expect = 4.6e-64
Identity = 143/248 (57.66%), Postives = 168/248 (67.74%), Query Frame = 1 

Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLEGRSGKSCRLRWFNQLDPRINRSPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIA+KL+GRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRINRSKTQTQTQTPS 120
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMARR R  RSK   +    +
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCR-ERSKLYAKRAAQT 120

Query: 121 SFHNNRL-----------------LLSSFL----QLHTYHPTSNS-------FIPKPPPD 180
             ++ +                  L+S F+    Q   Y  T N        F   P P 
Sbjct: 121 LMNDQQKTSLKQDVQVNCDQTRNDLISPFVEKYRQRFAYPFTYNCPQFPKEWFSQHPSPC 180

Query: 181 DRV---HTNSIHYYDFLHINTESINGSEVIDNSRKEEDYEEVNDQEAADTAGPV-LPFID 217
             +       + +YDFL +NTES NGSEVIDN+R+EE  EEVN QEA +      +PFI+
Sbjct: 181 ITMLEEKKQPVEFYDFLQVNTES-NGSEVIDNARREE--EEVNQQEAMEQQNKAGVPFIE 240

The following BLAST results are available for this feature:
BLAST of Lsi02G000200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
MYB44_ARATH1.2e-3056.44Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1[more]
MYB_BOVIN9.1e-2840.00Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1[more]
MYB_MOUSE9.1e-2843.85Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2[more]
MYB_XENLA1.2e-2741.10Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYB_HUMAN1.6e-2743.85Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2[more]
BLAST of Lsi02G000200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LPV0_CUCSA7.4e-9378.39Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029570 PE=4 SV=1[more]
A0A0E4B8Y8_9ROSI1.5e-6457.50MYB transcriptional factor OS=Populus tremula x Populus tremuloides GN=PtxtMYB09... [more]
B9I4W4_POPTR1.9e-6456.28MYB transcription factor OS=Populus trichocarpa GN=MYB167 PE=2 SV=1[more]
A0A0H4CRL4_BETPL3.2e-6457.66MYB transcription factor 3 OS=Betula platyphylla GN=MYB3 PE=2 SV=1[more]
A0A0F6UZP5_POPTO4.2e-6457.44MYB transcription factor R2R3 type OS=Populus tomentosa GN=Potri.015G033600 PE=2... [more]
BLAST of Lsi02G000200 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G73410.18.2e-5950.60 myb domain protein 54[more]
AT1G17950.12.6e-5789.19 myb domain protein 52[more]
AT1G26780.29.0e-5058.13 myb domain protein 117[more]
AT4G33450.15.9e-4966.67 myb domain protein 69[more]
AT1G69560.17.6e-4981.73 myb domain protein 105[more]
BLAST of Lsi02G000200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778656646|ref|XP_011649446.1|1.1e-9278.39PREDICTED: transcriptional activator Myb-like [Cucumis sativus][more]
gi|659066257|ref|XP_008455801.1|2.4e-8975.11PREDICTED: transcriptional activator Myb-like [Cucumis melo][more]
gi|803433984|dbj|BAR45576.1|2.1e-6457.50MYB transcriptional factor [Populus tremula x Populus tremuloides][more]
gi|224120416|ref|XP_002318324.1|2.7e-6456.28MYB transcription factor R2R3 type family protein [Populus trichocarpa][more]
gi|854930073|gb|AKN79285.1|4.6e-6457.66MYB transcription factor 3 [Betula platyphylla][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR017930Myb_dom
IPR009057Homeobox-like_sf
IPR001005SANT/Myb
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0010031 circumnutation
biological_process GO:0010629 negative regulation of gene expression
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0016310 phosphorylation
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0000785 chromatin
cellular_component GO:0005575 cellular_component
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi02G000200.1Lsi02G000200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainPFAMPF00249Myb_DNA-bindingcoord: 56..98
score: 1.5E-13coord: 4..49
score: 2.3
IPR001005SANT/Myb domainSMARTSM00717santcoord: 55..103
score: 9.5E-14coord: 3..52
score: 4.6
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 5..57
score: 3.0E-27coord: 58..103
score: 9.4
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 4..97
score: 8.24
IPR017930Myb domainPROFILEPS51294HTH_MYBcoord: 51..105
score: 25.521coord: 1..50
score: 19
NoneNo IPR availablePANTHERPTHR10641MYB-LIKE DNA-BINDING PROTEIN MYBcoord: 4..221
score: 5.3
NoneNo IPR availablePANTHERPTHR10641:SF665MYB TRANSCRIPTION FACTORcoord: 4..221
score: 5.3