CmaCh01G007520 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh01G007520
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Myb-like DNA-binding domain containing protein, expressed
Location	Cma_Chr01 : 4047368 .. 4048417 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGGAAGGGTGGTTCAGGGGTTATGAAAAGTAAACCCAACCTGAGAATCAATCACCTGTGCGTTTGGTTTGTAGGTTAGAAAGACGTTGAAAGCAGAGGGTAAATGAGCGCAGGAAGCAACCAAACAAAGCCAAGCCAAGCCAAGCTCTGCGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAAGAAGGCAACTCCTTCCGATGGGATCACATCAGATCTGGACGAGCATGATCGTGACACATAGCAGAGGCCACTGGCACGCTGCCAAAAACCACAAGCTGCAGATGCTGGTGGAGAGACATGACCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGTGGGTAAATTATATGTTCATTAAATCTACAATACCCATCTCATTGTTTTTTTATTCCCTTCAGGGAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTTCCTAGCCGCACTAATAATGCCGTGAAGAACCATTGGCATGTCATTAGGTCTCGAATGTCGAGACGGGCTTCCAAATATCACGTCAAGACTATGTTAGGGATAACCAATATTCACAGTGGTATTATGATATTGTCTATTTTGAATGTTTTAAGAAAGTCTCGTACAGTGGAGACAATATCTCTCATAATGGCACGTTTGTGTTTCAGATAGAAATCAAGGTGTGGATTTTTACAACTTTCTCCACTTGAATACAAGATCTATTAATGGAAGTGAAGTGATAGACCACTCAAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACGACCGCCAACACCGGCCATGACGTTGTTGTTCAAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCATTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAACTAAGCTTCTTCAACATGTTTCTTAAATTACTTAGTTATACCATTT

mRNA sequence

AGAAAGGAAGGGTGGTTCAGGGGTTATGAAAAGTAAACCCAACCTGAGAATCAATCACCTGTGCGTTTGGTTTGTAGGTTAGAAAGACGTTGAAAGCAGAGGGTAAATGAGCGCAGGAAGCAACCAAACAAAGCCAAGCCAAGCCAAGCTCTGCGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAAGAAGGCAACTCCTTCCGATGGGATCACATCAGATCTGGACGAGCATGATCGTGACACATAGCAGAGGCCACTGGCACGCTGCCAAAAACCACAAGCTGCAGATGCTGGTGGAGAGACATGACCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGGAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTTCCTAGCCGCACTAATAATGCCGTGAAGAACCATTGGCATGTCATTAGGTCTCGAATGTCGAGACGGGCTTCCAAATATCACGTCAAGACTATGTTAGGGATAACCAATATTCACAGTGATAGAAATCAAGGTGTGGATTTTTACAACTTTCTCCACTTGAATACAAGATCTATTAATGGAAGTGAAGTGATAGACCACTCAAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACGACCGCCAACACCGGCCATGACGTTGTTGTTCAAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCATTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAACTAAGCTTCTTCAACATGTTTCTTAAATTACTTAGTTATACCATTT

Coding sequence (CDS)

ATGGGATCACATCAGATCTGGACGAGCATGATCGTGACACATAGCAGAGGCCACTGGCACGCTGCCAAAAACCACAAGCTGCAGATGCTGGTGGAGAGACATGACCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGGAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTTCCTAGCCGCACTAATAATGCCGTGAAGAACCATTGGCATGTCATTAGGTCTCGAATGTCGAGACGGGCTTCCAAATATCACGTCAAGACTATGTTAGGGATAACCAATATTCACAGTGATAGAAATCAAGGTGTGGATTTTTACAACTTTCTCCACTTGAATACAAGATCTATTAATGGAAGTGAAGTGATAGACCACTCAAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACGACCGCCAACACCGGCCATGACGTTGTTGTTCAAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCATTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAA

Protein sequence

MGSHQIWTSMIVTHSRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNIHSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQKAATTANTGHDVVVQGTHKDEEKVVPFIDFFAAQTSIS

Homology

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BLAST of CmaCh01G007520 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.0e-25
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1


Query: 16  RGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 75
           +G W   ++ +L+ LV ++ P NW VI++S+ GRSGKSCRLRW NQL P++   PF+ EE
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 76  DQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKY 124
           D+ +  AH   GN+WA I+RL   RT+NAVKNHW+   S + R+   Y
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWN---STLKRKCGGY 110

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BLAST of CmaCh01G007520 vs. Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.8e-24
Identity = 54/108 (50.00%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           ++GHW   ++ KL+ LV+ H    W  IA  L  R+G+ CR RW NQLDP I RD +T E
Sbjct: 756 AKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLE 815

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASK 123
           ED+ +L AH+ +GN+WA IS+L P RTN A+KNHW+   S M R+ SK
Sbjct: 816 EDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWN---STMKRKLSK 860

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BLAST of CmaCh01G007520 vs. Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=3 SV=2)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 50/125 (40.00%), Postives = 76/125 (60.80%), Query Frame = 1


Query: 16  RGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 75
           +G W   ++ K+  LV+ + P  W+ IA  L+GR GK CR RW N L+P I ++ ++ EE
Sbjct: 201 KGAWTKDEDDKVIELVKTYGPKKWSDIALHLKGRMGKQCRERWHNHLNPNIKKEAWSDEE 260

Query: 76  DQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNIH 135
           DQ +   H IHGN+WA I++  P RT+NA+KNHW+    R+S   +  H+K+     ++ 
Sbjct: 261 DQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKRVSN--NNVHLKSHAIEHSLS 320

Query: 136 SDRNQ 141
           S  NQ
Sbjct: 321 SQDNQ 323

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BLAST of CmaCh01G007520 vs. Swiss-Prot
Match: MYB_XENLA (Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 49/121 (40.50%), Postives = 74/121 (61.16%), Query Frame = 1


Query: 16  RGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 75
           +G W   ++ ++  LV ++ P  W+VIA+ L+GR GK CR RW N L+P + +  +T+EE
Sbjct: 89  KGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEE 148

Query: 76  DQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNIH 135
           D+ +  AH   GNRWA I++L P RT+NA+KNHW+   S M R+  +         TN H
Sbjct: 149 DRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWN---STMRRKEEQEGYLQNSSKTNQH 206

Query: 136 S 137
           +
Sbjct: 209 T 206

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BLAST of CmaCh01G007520 vs. Swiss-Prot
Match: MYBB_XENLA (Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.1e-21
Identity = 43/95 (45.26%), Postives = 66/95 (69.47%), Query Frame = 1


Query: 16  RGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 75
           +G W   ++ K+  LV+++   +W +IA+ L+GR GK CR RW N L+P + +  +T+EE
Sbjct: 83  KGPWTKEEDEKVIELVKKYGTKHWTLIAKQLRGRMGKQCRERWHNHLNPEVKKSSWTEEE 142

Query: 76  DQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWH 111
           D+ +  AH + GNRWA I++L P RT+NAVKNHW+
Sbjct: 143 DRIICQAHKVLGNRWAEIAKLLPGRTDNAVKNHWN 177

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BLAST of CmaCh01G007520 vs. TrEMBL
Match: M5WDT4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021779mg PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 1.5e-55
Identity = 110/195 (56.41%), Postives = 144/195 (73.85%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVER+ PHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNI 134
           E++RLLA+H IHGNRWAII+RLFP RT+NAVKNHWHVI +R  R  S+ H K ++  ++ 
Sbjct: 63  EEERLLASHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARRCRERSRLHAK-LIRTSST 122

Query: 135 HSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQKAATTANTGHDVVVQGTHKDE 194
            + ++Q ++FY+FL +NT S NGSEVID++RKD+EEV+Q+A             G    +
Sbjct: 123 TNHKDQPIEFYDFLQVNTES-NGSEVIDNARKDEEEVDQEAV------------GQQISK 182

Query: 195 EKVVPFIDFFAAQTS 210
               PFI+F +   S
Sbjct: 183 AAGAPFIEFLSVNGS 183

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BLAST of CmaCh01G007520 vs. TrEMBL
Match: D7SGT6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01890 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 7.1e-53
Identity = 115/233 (49.36%), Postives = 142/233 (60.94%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVERH PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-------- 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  SK++ K        
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSWIN 122

Query: 135 ------------------------------TMLGITNIHSDRNQGVDFYNFLHLNTRSIN 194
                                          M+  T +  DR Q V+FY+FL++NT S N
Sbjct: 123 ERKSISKPDRQQMIGCDTRNLSSYVENCYENMIHCTKMLEDRTQPVEFYDFLNVNTDS-N 182

Query: 195 GSEVIDHSRKDDEEVNQKAATTANTGHDVVVQGTHKDEEKVVPFIDFFAAQTS 210
            SEVIDH+R+DDEEV Q+A                   +  VPFIDF +  +S
Sbjct: 183 RSEVIDHARRDDEEVEQEA--------------MDHQSKAGVPFIDFLSVGSS 220

[Close]

BLAST of CmaCh01G007520 vs. TrEMBL
Match: A5C561_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022615 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 3.5e-52
Identity = 108/199 (54.27%), Postives = 132/199 (66.33%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVERH PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-------- 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  SK++ K        
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSWIN 122

Query: 135 ------------------------------TMLGITNIHSDRNQGVDFYNFLHLNTRSIN 176
                                          M+  T +  DR Q V+FY+FL++NT S N
Sbjct: 123 ERKSISKPDRQQMIGCDTRNLSSYVENCYENMIHCTKMLEDRTQPVEFYDFLNVNTDS-N 182

[Close]

BLAST of CmaCh01G007520 vs. TrEMBL
Match: U5FLW4_POPTR (MYB transcription factor R2R3 type family protein OS=Populus trichocarpa GN=POPTR_0015s05130g PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.1e-51
Identity = 111/225 (49.33%), Postives = 146/225 (64.89%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVE++ PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-TMLGITN 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  S+ H K T   + N
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQALVN 122

Query: 135 IH--------------------------------SDRNQGVDFYNFLHLNTRSINGSEVI 194
                                             +D+N+ ++FY+FL +NT S N SEVI
Sbjct: 123 EQKFSSKQDMQINCETRSFSSFLLLLMFLTYMAIADQNRPIEFYDFLQVNTES-NKSEVI 182

Query: 195 DHSRKDDEEVNQKAATTANTGHDVVVQGTHKDEEKVVPFIDFFAA 207
           D++R++DEEV+Q+         +V+++   K     VPFIDFF+A
Sbjct: 183 DNARREDEEVDQR---------EVILEHQSK---AGVPFIDFFSA 214

[Close]

BLAST of CmaCh01G007520 vs. TrEMBL
Match: B9SWD8_RICCO (R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1204520 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 1.1e-50
Identity = 100/160 (62.50%), Postives = 125/160 (78.12%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVER+ PHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNI 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  S+   K        
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARKCRERSRLQAKRAAQC--- 122

Query: 135 HSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQK 175
              + Q V+FY+FL +NT S + SEVID++R+DDEEV+Q+
Sbjct: 123 ---KKQPVEFYDFLQVNTDS-SKSEVIDNARRDDEEVDQE 155

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BLAST of CmaCh01G007520 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 177.6 bits (449), Expect = 8.3e-45
Identity = 105/239 (43.93%), Postives = 136/239 (56.90%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           SRGHW  A++ KL+ LVE++ PHNWN IA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5   SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHV--------- 134
           E++RLLAAH IHGNRW+II+RLFP RT+NAVKNHWHVI +R +R+ SK  +         
Sbjct: 65  EEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLLPSTTSSSS 124

Query: 135 -----KTMLGI----TNIHSDRNQGV---DFYNF---------LHLNTRSINGSEVIDH- 194
                + M+       N  SD  + +   DF NF         LH       G   ++H 
Sbjct: 125 LMASEQIMMSSGGYNHNYSSDDRKKIFPADFINFPYKFSHINHLHFLKEFFTGKIALNHK 184

Query: 195 ---SRKDDEEVNQKAATTANTGHDVVVQGTHKDE--------EKVVPFIDFFAAQTSIS 212
              S+K  E  N     T +   +++ Q + + +        E  VPF DF +   S S
Sbjct: 185 ANQSKKPMEFYNFLQVNTDSNKSEIIDQDSGQSKRSDSDTKHESHVPFFDFLSVGNSAS 243

[Close]

BLAST of CmaCh01G007520 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 176.0 bits (445), Expect = 2.4e-44
Identity = 77/108 (71.30%), Postives = 91/108 (84.26%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           SRGHW  A++ KL+ LVE+  PHNWN IAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4   SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASK 123
           E++RLLA+H IHGNRW++I+R FP RT+NAVKNHWHVI +R  R  SK
Sbjct: 64  EEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSK 111

[Close]

BLAST of CmaCh01G007520 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 73/119 (61.34%), Postives = 94/119 (78.99%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           SRGHW  A++ KL+ LV  + P NWN+IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYH--VKTMLGI 132
           E++RL+ AH ++GN+WA+I+RLFP RT+N+VKNHWHVI +R  R  S  +   KTM+ +
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSL 224

[Close]

BLAST of CmaCh01G007520 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 159.1 bits (401), Expect = 3.0e-39
Identity = 80/160 (50.00%), Postives = 110/160 (68.75%), Query Frame = 1


Query: 3   SHQIWTSMIVTHS---RGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWF 62
           S Q W+S     S   RGHW  A++ KL+ LV  + P NWN+IA+ LQGRSGKSCRLRWF
Sbjct: 82  SGQSWSSSSSKPSVLGRGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWF 141

Query: 63  NQLDPRINRDPFTQEEDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSR- 122
           NQLDPRINR  FT+EE++RL+ AH ++GN+WA+I+RLFP RT+N+VKNHWHV+ +R  R 
Sbjct: 142 NQLDPRINRRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARKYRE 201

Query: 123 RASKYHVKTMLG-------ITNIHSDRNQGVDFYNFLHLN 152
            +S Y  + ++        +TN H   N   ++++F+  N
Sbjct: 202 HSSAYRRRKLMSNNPLKPHLTNNHHP-NPNPNYHSFISTN 240

[Close]

BLAST of CmaCh01G007520 vs. TAIR10
Match: AT5G17800.1 (AT5G17800.1 myb domain protein 56)

HSP 1 Score: 154.8 bits (390), Expect = 5.7e-38
Identity = 69/108 (63.89%), Postives = 86/108 (79.63%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           SRGHW   ++ KL+ LV +  P NWN+I+  L GRSGKSCRLRWFNQLDPRIN+  FT+E
Sbjct: 92  SRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFTEE 151

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASK 123
           E+ RLLAAH  +GN+WA+ISRLFP RT+NAVKNHWHVI +R +R + +
Sbjct: 152 EEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTRESQR 199

[Close]

BLAST of CmaCh01G007520 vs. NCBI nr
Match: gi|595858345|ref|XP_007210728.1| (hypothetical protein PRUPE_ppa021779mg [Prunus persica])

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-55
Identity = 110/195 (56.41%), Postives = 144/195 (73.85%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVER+ PHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTMLGITNI 134
           E++RLLA+H IHGNRWAII+RLFP RT+NAVKNHWHVI +R  R  S+ H K ++  ++ 
Sbjct: 63  EEERLLASHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARRCRERSRLHAK-LIRTSST 122

Query: 135 HSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQKAATTANTGHDVVVQGTHKDE 194
            + ++Q ++FY+FL +NT S NGSEVID++RKD+EEV+Q+A             G    +
Sbjct: 123 TNHKDQPIEFYDFLQVNTES-NGSEVIDNARKDEEEVDQEAV------------GQQISK 182

Query: 195 EKVVPFIDFFAAQTS 210
               PFI+F +   S
Sbjct: 183 AAGAPFIEFLSVNGS 183

[Close]

BLAST of CmaCh01G007520 vs. NCBI nr
Match: gi|225456240|ref|XP_002279279.1| (PREDICTED: transcriptional activator Myb [Vitis vinifera])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 115/233 (49.36%), Postives = 142/233 (60.94%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVERH PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-------- 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  SK++ K        
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSWIN 122

Query: 135 ------------------------------TMLGITNIHSDRNQGVDFYNFLHLNTRSIN 194
                                          M+  T +  DR Q V+FY+FL++NT S N
Sbjct: 123 ERKSISKPDRQQMIGCDTRNLSSYVENCYENMIHCTKMLEDRTQPVEFYDFLNVNTDS-N 182

Query: 195 GSEVIDHSRKDDEEVNQKAATTANTGHDVVVQGTHKDEEKVVPFIDFFAAQTS 210
            SEVIDH+R+DDEEV Q+A                   +  VPFIDF +  +S
Sbjct: 183 RSEVIDHARRDDEEVEQEA--------------MDHQSKAGVPFIDFLSVGSS 220

[Close]

BLAST of CmaCh01G007520 vs. NCBI nr
Match: gi|147859366|emb|CAN83952.1| (hypothetical protein VITISV_022615 [Vitis vinifera])

HSP 1 Score: 213.0 bits (541), Expect = 5.0e-52
Identity = 108/199 (54.27%), Postives = 132/199 (66.33%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVERH PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRAPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-------- 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  SK++ K        
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCREKSKFYAKRAAQSWIN 122

Query: 135 ------------------------------TMLGITNIHSDRNQGVDFYNFLHLNTRSIN 176
                                          M+  T +  DR Q V+FY+FL++NT S N
Sbjct: 123 ERKSISKPDRQQMIGCDTRNLSSYVENCYENMIHCTKMLEDRTQPVEFYDFLNVNTDS-N 182

[Close]

BLAST of CmaCh01G007520 vs. NCBI nr
Match: gi|566205909|ref|XP_006374218.1| (MYB transcription factor R2R3 type family protein [Populus trichocarpa])

HSP 1 Score: 209.1 bits (531), Expect = 7.3e-51
Identity = 111/225 (49.33%), Postives = 146/225 (64.89%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVE++ PHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLKELVEKYGPHNWNAIAEKLHGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK-TMLGITN 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  S+ H K T   + N
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRYRERSRLHAKRTAQALVN 122

Query: 135 IH--------------------------------SDRNQGVDFYNFLHLNTRSINGSEVI 194
                                             +D+N+ ++FY+FL +NT S N SEVI
Sbjct: 123 EQKFSSKQDMQINCETRSFSSFLLLLMFLTYMAIADQNRPIEFYDFLQVNTES-NKSEVI 182

Query: 195 DHSRKDDEEVNQKAATTANTGHDVVVQGTHKDEEKVVPFIDFFAA 207
           D++R++DEEV+Q+         +V+++   K     VPFIDFF+A
Sbjct: 183 DNARREDEEVDQR---------EVILEHQSK---AGVPFIDFFSA 214

[Close]

BLAST of CmaCh01G007520 vs. NCBI nr
Match: gi|1000944614|ref|XP_015581555.1| (PREDICTED: transcription factor MYB44 [Ricinus communis])

HSP 1 Score: 208.0 bits (528), Expect = 1.6e-50
Identity = 100/164 (60.98%), Postives = 128/164 (78.05%), Query Frame = 1


Query: 15  SRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 74
           +RGHW  A++ KL+ LVER+ PHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62

Query: 75  EDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVK----TMLG 134
           E++RLLA+H IHGNRWA+I+RLFP RT+NAVKNHWHVI +R  R  S+   K     ++ 
Sbjct: 63  EEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARKCRERSRLQAKRAAQCLVN 122

Query: 135 ITNIHSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQK 175
                + + Q V+FY+FL +NT S + SEVID++R+DDEEV+Q+
Sbjct: 123 EQKHMAGKKQPVEFYDFLQVNTDS-SKSEVIDNARRDDEEVDQE 165

The following BLAST results are available for this feature:

BLAST of CmaCh01G007520 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	4.0e-25	48.15	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYBAA_DICDI	5.8e-24	50.00	Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1	[more]
MYBA_DICDI	1.6e-21	40.00	Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=3 SV=2	[more]
MYB_XENLA	2.1e-21	40.50	Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1	[more]
MYBB_XENLA	2.1e-21	45.26	Myb-related protein B OS=Xenopus laevis GN=mybl2 PE=2 SV=2	[more]

BLAST of CmaCh01G007520 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WDT4_PRUPE	1.5e-55	56.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021779mg PE=4 SV=1	[more]
D7SGT6_VITVI	7.1e-53	49.36	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g01890 PE=4 SV=...	[more]
A5C561_VITVI	3.5e-52	54.27	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022615 PE=4 SV=1	[more]
U5FLW4_POPTR	5.1e-51	49.33	MYB transcription factor R2R3 type family protein OS=Populus trichocarpa GN=POPT...	[more]
B9SWD8_RICCO	1.1e-50	62.50	R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_1204520 PE=4...	[more]

BLAST of CmaCh01G007520 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G73410.1	8.3e-45	43.93	myb domain protein 54	[more]
AT1G17950.1	2.4e-44	71.30	myb domain protein 52	[more]
AT1G69560.1	2.3e-39	61.34	myb domain protein 105	[more]
AT1G26780.2	3.0e-39	50.00	myb domain protein 117	[more]
AT5G17800.1	5.7e-38	63.89	myb domain protein 56	[more]

BLAST of CmaCh01G007520 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|595858345\|ref\|XP_007210728.1\|	2.2e-55	56.41	hypothetical protein PRUPE_ppa021779mg [Prunus persica]	[more]
gi\|225456240\|ref\|XP_002279279.1\|	1.0e-52	49.36	PREDICTED: transcriptional activator Myb [Vitis vinifera]	[more]
gi\|147859366\|emb\|CAN83952.1\|	5.0e-52	54.27	hypothetical protein VITISV_022615 [Vitis vinifera]	[more]
gi\|566205909\|ref\|XP_006374218.1\|	7.3e-51	49.33	MYB transcription factor R2R3 type family protein [Populus trichocarpa]	[more]
gi\|1000944614\|ref\|XP_015581555.1\|	1.6e-50	60.98	PREDICTED: transcription factor MYB44 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017877	Myb-like_dom
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0010031	circumnutation
biological_process	GO:0010629	negative regulation of gene expression
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh01G007520.1	CmaCh01G007520.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 15..64 score: 1.5E-5coord: 67..115 score: 2.3
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 70..112 score: 7.6E-20coord: 17..69 score: 1.9
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 41..118 score: 8.79
IPR017877	Myb-like domain	PROFILE	PS50090	MYB_LIKE	coord: 16..62 score: 9
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 63..117 score: 23
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 191..211 score: 2.3E-65coord: 5..161 score: 2.3
None	No IPR available	PANTHER	PTHR10641:SF665	MYB TRANSCRIPTION FACTOR	coord: 191..211 score: 2.3E-65coord: 5..161 score: 2.3
None	No IPR available	PFAM	PF13921	Myb_DNA-bind_6	coord: 19..79 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh01G007520	Cucsa.112050	Cucumber (Gy14) v1	cgycmaB0273
CmaCh01G007520	Cla018657	Watermelon (97103) v1	cmawmB451
CmaCh01G007520	Csa1G029570	Cucumber (Chinese Long) v2	cmacuB432
CmaCh01G007520	ClCG04G012700	Watermelon (Charleston Gray)	cmawcgB405
CmaCh01G007520	CSPI01G04880	Wild cucumber (PI 183967)	cmacpiB435
CmaCh01G007520	CmoCh01G007870	Cucurbita moschata (Rifu)	cmacmoB468
CmaCh01G007520	Lsi02G000200	Bottle gourd (USVL1VR-Ls)	cmalsiB410
CmaCh01G007520	Cp4.1LG02g09990	Cucurbita pepo (Zucchini)	cmacpeB490
CmaCh01G007520	Cp4.1LG20g00070	Cucurbita pepo (Zucchini)	cmacpeB484
CmaCh01G007520	MELO3C035775.2	Melon (DHL92) v3.6.1	cmamedB452
CmaCh01G007520	CsaV3_1G004830	Cucumber (Chinese Long) v3	cmacucB0519
CmaCh01G007520	Cla97C04G079740	Watermelon (97103) v2	cmawmbB469
CmaCh01G007520	Bhi08G001601	Wax gourd	cmawgoB0588
CmaCh01G007520	CsGy1G004740	Cucumber (Gy14) v2	cgybcmaB111
CmaCh01G007520	Carg06989	Silver-seed gourd	carcmaB0731
CmaCh01G007520	Carg04694	Silver-seed gourd	carcmaB0545

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh01G007520	CmaCh13G011460	Cucurbita maxima (Rimu)	cmacmaB221

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh01G007520	Cucumber (Gy14) v1	cgycmaB0271
CmaCh01G007520	Wild cucumber (PI 183967)	cmacpiB431
CmaCh01G007520	Cucumber (Chinese Long) v2	cmacuB428
CmaCh01G007520	Melon (DHL92) v3.5.1	cmameB392
CmaCh01G007520	Cucumber (Gy14) v2	cgybcmaB105
CmaCh01G007520	Cucumber (Chinese Long) v3	cmacucB0513