CmoCh01G007870 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh01G007870
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(MYB transcription factor) (Myb-like DNA-binding domain containing protein)
Location	Cmo_Chr01 : 4136122 .. 4136971 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGAGCGCAGGAAGCAACCAAGCCAAGCCAAGCTGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGAAGGCAATCCCTTCTGGATCTAGACGAGCATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGTGGGTAAATTATATGTTCTTCATTAAATCTACAATACCCATCTCATTGTTTTTATTCCCTTCAGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGGTCAAGAATCATTGGCACGTCATCCGGGCTCGAACGTCCAGACGGGCCTCCAAACACCGCGTCAAGACTAGGTTAGGAATAATCGATATTCACAATGGTATGATATTGTCTATTTTAATAATTTTTTTAGAAAAGCCTCGTCCAGTGGAGACAATATCTCTCATAATGGCACGTTTGTGTTACAGATAGCCATCAAGGTGTGGATTTTTACAACTTTCTCCACTTGAATACAGAATCTATTAATGGAAGTGAAGTGACAGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

mRNA sequence

ATTGAGCGCAGGAAGCAACCAAGCCAAGCCAAGCTGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGAAGGCAATCCCTTCTGGATCTAGACGAGCATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

Coding sequence (CDS)

ATGACCGTGACACACAGTAGAGGTCACTGGCGCCCTGCGGAAGACCACAAGCTGCAGGAGCTGGTGGAGCGACATGGCCCTCATAACTGGAACGCCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAGAGGCTGTTGGCGGCGCATACCATTCATGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCGACCACTCGAGAAAAGATCGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCTACACCAGCCATGACGTTGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAG

Homology

[Close]

BLAST of CmoCh01G007870 vs. Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.3e-25
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1


Query: 7  RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
          +G W P ED +L+ LV ++GP NW  I++S+ GRSGKSCRLRW NQL P++   PF+ EE
Sbjct: 6  KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 67 DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          D+ +  AH   GN+WA I+RL  GRTDNA
Sbjct: 66 DETIARAHAQFGNKWATIARLLNGRTDNA 94

[Close]

BLAST of CmoCh01G007870 vs. Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 4.0e-23
Identity = 53/106 (50.00%), Postives = 68/106 (64.15%), Query Frame = 1


Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           ++GHW   ED KL+ LV+ HG   W  IA  L  R+G+ CR RW NQLDP I RD +T E
Sbjct: 756 AKGHWTKEEDEKLRSLVDLHGTKRWKYIASLLCLRNGRQCRERWSNQLDPSIKRDAWTLE 815

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNATTREKIEKMMKKLIKK 112
           ED+ +L AH+ +GN+WA IS+L PGRT+ A        M +KL KK
Sbjct: 816 EDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKLSKK 861

[Close]

BLAST of CmoCh01G007870 vs. Swiss-Prot
Match: MYB_BOVIN (Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.6e-22
Identity = 52/131 (39.69%), Postives = 82/131 (62.60%), Query Frame = 1


Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           +G W   ED ++ ELV+++GP  W+ IA+ L+GR GK CR RW N L+P + +  +T+EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA-------TTREKIEKMMKKLIKKLPQPPTPA 126
           D+ +  AH   GNRWA I++L PGRTDNA       T R K+E+  +  +++  +   PA
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ--EGYLQESSKASQPA 211

Query: 127 MTLLFEEPTRM 131
           +T  F++ + +
Sbjct: 212 VTTSFQKNSHL 220

[Close]

BLAST of CmoCh01G007870 vs. Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.5e-22
Identity = 46/102 (45.10%), Postives = 67/102 (65.69%), Query Frame = 1


Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           +G W   ED+ + +LVE++GP  W+ I+Q L GR GK CR RW N L+P IN++ +TQEE
Sbjct: 87  KGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPGRIGKQCRERWHNHLNPGINKNAWTQEE 146

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNATTREKIEKMMKKL 109
           +  L+ AH I+GN+WA + +  PGR+DN+        + KKL
Sbjct: 147 ELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKL 188

[Close]

BLAST of CmoCh01G007870 vs. Swiss-Prot
Match: MYB_MOUSE (Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2)

HSP 1 Score: 105.1 bits (261), Expect = 5.8e-22
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1


Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           +G W   ED ++ ELV+++GP  W+ IA+ L+GR GK CR RW N L+P + +  +T+EE
Sbjct: 92  KGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEE 151

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA-------TTREKIEK 104
           D+ +  AH   GNRWA I++L PGRTDNA       T R K+E+
Sbjct: 152 DRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

[Close]

BLAST of CmoCh01G007870 vs. TrEMBL
Match: A0A0B0NW29_GOSAR (Transcription factor MYB44-like protein OS=Gossypium arboreum GN=F383_02330 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 9.3e-43
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLL+AH IHGNRWA+I+RLFPGRTDNA
Sbjct: 63 EEERLLSAHRIHGNRWAVIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. TrEMBL
Match: A0A0A0LPV0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.0e-41
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVER+GPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RL+A+H +HGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLMASHRVHGNRWAIIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. TrEMBL
Match: A0A097HUI3_JATCU (MYB family protein OS=Jatropha curcas PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 84/121 (69.42%), Postives = 98/121 (80.99%), Query Frame = 1


Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPAED KL+ELVER+GPHNWNAIA+ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   SRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNATTREKIEKMMKKLIKKL---PQPPTPAMTL 124
           E++RLLA+H +HGNRWA+I+RLFPGRTDNA        M +K  ++     + PT A TL
Sbjct: 63  EEERLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVIMARKCRERTRLQAKRPTHAHTL 122

[Close]

BLAST of CmoCh01G007870 vs. TrEMBL
Match: M5WDT4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021779mg PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.3e-41
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          +RGHWRPAED KL+ELVER+GPHNWNAIA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLLASHRIHGNRWAIIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. TrEMBL
Match: A0A0H4CRL4_BETPL (MYB transcription factor 3 OS=Betula platyphylla GN=MYB3 PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-41
Identity = 76/90 (84.44%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          +RGHWRPAED KL+ELVER+GPHNWNAIA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRWA+I+RLFPGRTDNA
Sbjct: 63 EEERLLASHRIHGNRWAVIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. TAIR10
Match: AT1G17950.1 (AT1G17950.1 myb domain protein 52)

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-43
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVE+ GPHNWNAIAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4  SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRW++I+R FPGRTDNA
Sbjct: 64 EEERLLASHRIHGNRWSVIARFFPGRTDNA 93

[Close]

BLAST of CmoCh01G007870 vs. TAIR10
Match: AT1G73410.1 (AT1G73410.1 myb domain protein 54)

HSP 1 Score: 171.8 bits (434), Expect = 2.9e-43
Identity = 75/90 (83.33%), Postives = 85/90 (94.44%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL++LVE++GPHNWNAIA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5  SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLAAH IHGNRW+II+RLFPGRTDNA
Sbjct: 65 EEERLLAAHRIHGNRWSIIARLFPGRTDNA 94

[Close]

BLAST of CmoCh01G007870 vs. TAIR10
Match: AT1G69560.1 (AT1G69560.1 myb domain protein 105)

HSP 1 Score: 154.8 bits (390), Expect = 3.6e-38
Identity = 67/90 (74.44%), Postives = 80/90 (88.89%), Query Frame = 1


Query: 6   SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 66  EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           E++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNS 195

[Close]

BLAST of CmoCh01G007870 vs. TAIR10
Match: AT1G26780.2 (AT1G26780.2 myb domain protein 117)

HSP 1 Score: 153.3 bits (386), Expect = 1.1e-37
Identity = 66/89 (74.16%), Postives = 79/89 (88.76%), Query Frame = 1


Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRPAED KL+ELV  +GP NWN IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           ++RL+ AH ++GN+WA+I+RLFPGRTDN+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNS 186

[Close]

BLAST of CmoCh01G007870 vs. TAIR10
Match: AT4G33450.1 (AT4G33450.1 myb domain protein 69)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-36
Identity = 65/89 (73.03%), Postives = 75/89 (84.27%), Query Frame = 1


Query: 7   RGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRP ED  L++LVE++GP NWN IAQ L GRSGKSCRLRW+NQLDP I + PFT+EE
Sbjct: 19  RGHWRPVEDDNLRQLVEQYGPKNWNFIAQHLYGRSGKSCRLRWYNQLDPNITKKPFTEEE 78

Query: 67  DQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
           ++RLL AH I GNRWA I+RLFPGRTDNA
Sbjct: 79  EERLLKAHRIQGNRWASIARLFPGRTDNA 107

[Close]

BLAST of CmoCh01G007870 vs. NCBI nr
Match: gi|728839270|gb|KHG18713.1| (Transcription factor MYB44 -like protein [Gossypium arboreum])

HSP 1 Score: 181.0 bits (458), Expect = 1.3e-42
Identity = 79/90 (87.78%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVERHGPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLL+AH IHGNRWA+I+RLFPGRTDNA
Sbjct: 63 EEERLLSAHRIHGNRWAVIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. NCBI nr
Match: gi|659066257|ref|XP_008455801.1| (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVER+GPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RL+A+H +HGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLMASHRVHGNRWAIIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. NCBI nr
Match: gi|778656646|ref|XP_011649446.1| (PREDICTED: transcriptional activator Myb-like [Cucumis sativus])

HSP 1 Score: 177.6 bits (449), Expect = 1.5e-41
Identity = 77/90 (85.56%), Postives = 86/90 (95.56%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          SRGHWRPAED KL+ELVER+GPHNWNAIAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3  SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RL+A+H +HGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLMASHRVHGNRWAIIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. NCBI nr
Match: gi|595858345|ref|XP_007210728.1| (hypothetical protein PRUPE_ppa021779mg [Prunus persica])

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          +RGHWRPAED KL+ELVER+GPHNWNAIA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3  TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLLASHRIHGNRWAIIARLFPGRTDNA 92

[Close]

BLAST of CmoCh01G007870 vs. NCBI nr
Match: gi|1009133448|ref|XP_015883906.1| (PREDICTED: transcriptional activator Myb-like [Ziziphus jujuba])

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-41
Identity = 77/90 (85.56%), Postives = 87/90 (96.67%), Query Frame = 1


Query: 6  SRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
          +RGHWRPAED KL+ELVER+GPHNWNAIA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3  TRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 66 EDQRLLAAHTIHGNRWAIISRLFPGRTDNA 96
          E++RLLA+H IHGNRWAII+RLFPGRTDNA
Sbjct: 63 EEERLLASHRIHGNRWAIIARLFPGRTDNA 92

The following BLAST results are available for this feature:

BLAST of CmoCh01G007870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MYB44_ARATH	3.3e-25	55.06	Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1	[more]
MYBAA_DICDI	4.0e-23	50.00	Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1	[more]
MYB_BOVIN	2.6e-22	39.69	Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1	[more]
MB3R1_ARATH	4.5e-22	45.10	Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1	[more]
MYB_MOUSE	5.8e-22	46.15	Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2	[more]

BLAST of CmoCh01G007870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0B0NW29_GOSAR	9.3e-43	87.78	Transcription factor MYB44-like protein OS=Gossypium arboreum GN=F383_02330 PE=4...	[more]
A0A0A0LPV0_CUCSA	1.0e-41	85.56	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G029570 PE=4 SV=1	[more]
A0A097HUI3_JATCU	1.3e-41	69.42	MYB family protein OS=Jatropha curcas PE=4 SV=1	[more]
M5WDT4_PRUPE	1.3e-41	85.56	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021779mg PE=4 SV=1	[more]
A0A0H4CRL4_BETPL	1.8e-41	84.44	MYB transcription factor 3 OS=Betula platyphylla GN=MYB3 PE=2 SV=1	[more]

BLAST of CmoCh01G007870 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17950.1	2.9e-43	82.22	myb domain protein 52	[more]
AT1G73410.1	2.9e-43	83.33	myb domain protein 54	[more]
AT1G69560.1	3.6e-38	74.44	myb domain protein 105	[more]
AT1G26780.2	1.1e-37	74.16	myb domain protein 117	[more]
AT4G33450.1	1.5e-36	73.03	myb domain protein 69	[more]

BLAST of CmoCh01G007870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|728839270\|gb\|KHG18713.1\|	1.3e-42	87.78	Transcription factor MYB44 -like protein [Gossypium arboreum]	[more]
gi\|659066257\|ref\|XP_008455801.1\|	1.1e-41	85.56	PREDICTED: transcriptional activator Myb-like [Cucumis melo]	[more]
gi\|778656646\|ref\|XP_011649446.1\|	1.5e-41	85.56	PREDICTED: transcriptional activator Myb-like [Cucumis sativus]	[more]
gi\|595858345\|ref\|XP_007210728.1\|	1.9e-41	85.56	hypothetical protein PRUPE_ppa021779mg [Prunus persica]	[more]
gi\|1009133448\|ref\|XP_015883906.1\|	1.9e-41	85.56	PREDICTED: transcriptional activator Myb-like [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh01G007870.1	CmoCh01G007870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 7..52 score: 1.3E-17coord: 59..94 score: 1.6
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 6..55 score: 2.4E-12coord: 58..107 score: 1.
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 8..60 score: 8.8E-27coord: 61..95 score: 7.9
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 5..96 score: 1.02
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 2..57 score: 21.252coord: 58..109 score: 14
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..95 score: 2.5
None	No IPR available	PANTHER	PTHR10641:SF665	MYB TRANSCRIPTION FACTOR	coord: 1..95 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh01G007870	CmaCh01G007520	Cucurbita maxima (Rimu)	cmacmoB468
CmoCh01G007870	Lsi02G000200	Bottle gourd (USVL1VR-Ls)	cmolsiB396
CmoCh01G007870	Cp4.1LG02g09990	Cucurbita pepo (Zucchini)	cmocpeB448
CmoCh01G007870	MELO3C035775.2	Melon (DHL92) v3.6.1	cmomedB440
CmoCh01G007870	CsaV3_1G004830	Cucumber (Chinese Long) v3	cmocucB0506
CmoCh01G007870	Cla97C04G079740	Watermelon (97103) v2	cmowmbB450
CmoCh01G007870	Bhi08G001601	Wax gourd	cmowgoB0584
CmoCh01G007870	CsGy1G004740	Cucumber (Gy14) v2	cgybcmoB106
CmoCh01G007870	Carg06989	Silver-seed gourd	carcmoB0708

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh01G007870	Cucumber (Gy14) v1	cgycmoB0267
CmoCh01G007870	Wild cucumber (PI 183967)	cmocpiB421
CmoCh01G007870	Cucumber (Chinese Long) v2	cmocuB417
CmoCh01G007870	Melon (DHL92) v3.5.1	cmomeB383
CmoCh01G007870	Watermelon (Charleston Gray)	cmowcgB404
CmoCh01G007870	Watermelon (97103) v1	cmowmB446
CmoCh01G007870	Cucumber (Gy14) v2	cgybcmoB099
CmoCh01G007870	Cucumber (Chinese Long) v3	cmocucB0501