Carg06989 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg06989
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	MYB transcription factor
Location	Cucurbita_argyrosperma_scaffold_065 : 715572 .. 716545 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGGGTGGTTAAGGGGTTATGAAAAGTACATCCAACCTGAGAATCAATCAGCTGTGCGTTTGGTTTGTAGGTTAGAAAGACGTTGAAAGTAGAGGGAAATTGAGCGCAGGAAGCAACCAAGCCAAGCCGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGCAATCCCTTCTGGATCTGGACGAGCATGACCGTGACACACAGTAGAGGCCACTGGCGCCCTACCGAAGACCACAAGCTGCAGGAGCTTGTGGAGCGACATGGCCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGTGGGTAAATTATATGTTCTTCATTAAATCTACAATACCCATCTCATTGTTTTTATTCCCTTCAGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAAAGGCTGTTGGCGGCGCATACCATTCCTGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCCGTCAAGAATCATTGGCATGTCATCCGAGCTCGAACGTCCAAATGGGCTTCCAAACACCGCGTCAAGACGATGTTAGGAATAATCGATATTCACAGTGGTATGATATTGTCTATTTTAATAGTTTTTTTAGAAAAGCCTCGTCCAGTGGAGACAATATCTCTCGTAATGGTACGTTTGTGTTACAGATAGCCATCAAGGTGTGGATTTTTACAACTTTCTCCACATAAATACAGAATCTATTAATGGAAGTGAAGTGACAGACCACTCGAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCGACACCAGCCATGACGTCGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCGTTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAG

mRNA sequence

AAGGGTGGTTAAGGGGTTATGAAAAGTACATCCAACCTGAGAATCAATCAGCTGTGCGTTTGGTTTGTAGGTTAGAAAGACGTTGAAAGTAGAGGGAAATTGAGCGCAGGAAGCAACCAAGCCAAGCCGTGCGTTTGGTTTGGTTTGGTTTGGATTTCTTATTAATTGTTAGATCAGGGAAGGAAGGCAATCCCTTCTGGATCTGGACGAGCATGACCGTGACACACAGTAGAGGCCACTGGCGCCCTACCGAAGACCACAAGCTGCAGGAGCTTGTGGAGCGACATGGCCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAAAGGCTGTTGGCGGCGCATACCATTCCTGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCCGTCAAGAATCATTGGCATGTCATCCGAGCTCGAACGTCCAAATGGGCTTCCAAACACCGCGTCAAGACGATGTTAGGAATAATCGATATTCACAGTGATAGCCATCAAGGTGTGGATTTTTACAACTTTCTCCACATAAATACAGAATCTATTAATGGAAGTGAAGTGACAGACCACTCGAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCGACACCAGCCATGACGTCGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCGTTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAG

Coding sequence (CDS)

ATGACCGTGACACACAGTAGAGGCCACTGGCGCCCTACCGAAGACCACAAGCTGCAGGAGCTTGTGGAGCGACATGGCCCTCATAACTGGAACGTCATTGCTCAAAGCCTTCAAGGAAGATCCGGAAAGAGCTGCCGTTTGAGATGGTTTAATCAGTTGGATCCTCGCATAAACAGAGACCCCTTCACCCAAGAGGAAGACCAAAGGCTGTTGGCGGCGCATACCATTCCTGGCAACAGATGGGCCATCATCTCTAGGCTTTTCCCTGGGCGCACTGACAATGCCGTCAAGAATCATTGGCATGTCATCCGAGCTCGAACGTCCAAATGGGCTTCCAAACACCGCGTCAAGACGATGTTAGGAATAATCGATATTCACAGTGATAGCCATCAAGGTGTGGATTTTTACAACTTTCTCCACATAAATACAGAATCTATTAATGGAAGTGAAGTGACAGACCACTCGAGAAAAGATGATGAAGAAGTTAATCAAAAAGCTGCCACAACCGCCGACACCAGCCATGACGTCGTTGTTCGAGGAACCCACAAGGATGAGGAGAAGGTAGTTCCATTCGTTGATTTCTTTGCTGCCCAAACCTCTATCTCCTAG

Protein sequence

MTVTHSRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEEDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTMLGIIDIHSDSHQGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDEEKVVPFVDFFAAQTSIS

Homology

[Close]

BLAST of Carg06989 vs. NCBI nr
Match: XP_022949244.1 (transcription factor MYB52-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 392.9 bits (1008), Expect = 6.6e-106
Identity = 191/205 (93.17%), Postives = 195/205 (95.12%), Query Frame = 0


Query: 1   MTVTHSRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
           MTVTHSRGHWRP EDHKLQELVERHGPHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1   MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61  PFTQEEDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTML 120
           PFTQEEDQRLLAAHTI GNRWAIISRLFPGRTDNAVKNHWHVIRARTS+ ASKHRVKT L
Sbjct: 61  PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNAVKNHWHVIRARTSRRASKHRVKTRL 120

Query: 121 GIIDIHSDSHQGVDFYNFLHINTESINGSEVTDHS---RKDDEEVNQKAATTADTSHDVV 180
           GIIDIH+DSHQGVDFYNFLH+NTESINGSEVTDHS   RKDDEEVNQKAATTA TSHDVV
Sbjct: 121 GIIDIHNDSHQGVDFYNFLHLNTESINGSEVTDHSRKDRKDDEEVNQKAATTAYTSHDVV 180

Query: 181 VRGTHKDEEKVVPFVDFFAAQTSIS 203
           VRGTHKDEEKVVPF+DF AAQTSIS
Sbjct: 181 VRGTHKDEEKVVPFIDFLAAQTSIS 205

[Close]

BLAST of Carg06989 vs. NCBI nr
Match: XP_022998175.1 (transcription factor MYB52-like [Cucurbita maxima])

HSP 1 Score: 363.2 bits (931), Expect = 5.6e-97
Identity = 174/202 (86.14%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 1   MTVTHSRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
           M VTHSRGHW   ++HKLQ LVERH PHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 10  MIVTHSRGHWHAAKNHKLQMLVERHDPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 69

Query: 61  PFTQEEDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTML 120
           PFTQEEDQRLLAAHTI GNRWAIISRLFP RT+NAVKNHWHVIR+R S+ ASK+ VKTML
Sbjct: 70  PFTQEEDQRLLAAHTIHGNRWAIISRLFPSRTNNAVKNHWHVIRSRMSRRASKYHVKTML 129

Query: 121 GIIDIHSDSHQGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRG 180
           GI +IHSD +QGVDFYNFLH+NT SINGSEV DHSRKDDEEVNQKAATTA+T HDVVV+G
Sbjct: 130 GITNIHSDRNQGVDFYNFLHLNTRSINGSEVIDHSRKDDEEVNQKAATTANTGHDVVVQG 189

Query: 181 THKDEEKVVPFVDFFAAQTSIS 203
           THKDEEKVVPF+DFFAAQTSIS
Sbjct: 190 THKDEEKVVPFIDFFAAQTSIS 211

[Close]

BLAST of Carg06989 vs. NCBI nr
Match: XP_022949245.1 (transcription factor MYB52-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 348.6 bits (893), Expect = 1.4e-92
Identity = 176/205 (85.85%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 1   MTVTHSRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRD 60
           MTVTHSRGHWRP EDHKLQELVERHGPHNWN IAQSLQGRSGKSCRLRWFNQLDPRINRD
Sbjct: 1   MTVTHSRGHWRPAEDHKLQELVERHGPHNWNAIAQSLQGRSGKSCRLRWFNQLDPRINRD 60

Query: 61  PFTQEEDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTML 120
           PFTQEEDQRLLAAHTI GNRWAIISRLFPGRTDNAVKNHWHVIRARTS+ ASKHRVKT L
Sbjct: 61  PFTQEEDQRLLAAHTIHGNRWAIISRLFPGRTDNAVKNHWHVIRARTSRRASKHRVKTRL 120

Query: 121 GIIDIHSDSHQGVDFYNFLHINTESINGSEVTDHS---RKDDEEVNQKAATTADTSHDVV 180
           GIIDIH+                ESINGSEVTDHS   RKDDEEVNQKAATTA TSHDVV
Sbjct: 121 GIIDIHN----------------ESINGSEVTDHSRKDRKDDEEVNQKAATTAYTSHDVV 180

Query: 181 VRGTHKDEEKVVPFVDFFAAQTSIS 203
           VRGTHKDEEKVVPF+DF AAQTSIS
Sbjct: 181 VRGTHKDEEKVVPFIDFLAAQTSIS 189

[Close]

BLAST of Carg06989 vs. NCBI nr
Match: XP_021907727.1 (transcription factor MYB52 [Carica papaya])

HSP 1 Score: 230.3 bits (586), Expect = 5.7e-57
Identity = 115/209 (55.02%), Postives = 144/209 (68.90%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           +RGHWRP ED KL+ELV RHGPHNWN IA+ L GRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVHRHGPHNWNAIAEKLPGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRV--KTMLGII 125
           E++RLLA+H I GNRWA+I++LFPGRTDNAVKNHWHV+ AR  +  S+ ++  KT++   
Sbjct: 63  EEERLLASHRIHGNRWAVIAKLFPGRTDNAVKNHWHVVMARRYRERSRLQLYAKTLINHH 122

Query: 126 DIHS----------------DSHQGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAA 185
           + HS                D  QGV+FY+FLH+NTES   SEVTD+ ++DDE+V Q+ A
Sbjct: 123 NHHSQLLVKQLQTQSRTTNQDKKQGVEFYDFLHVNTESGETSEVTDNCKRDDEDVEQEQA 182

Query: 186 TTADTSHDVVVRGTHKDEEKVVPFVDFFA 197
           +                    VPF+DFF+
Sbjct: 183 SG-------------------VPFIDFFS 192

[Close]

BLAST of Carg06989 vs. NCBI nr
Match: XP_022137548.1 (transcription factor MYB52-like [Momordica charantia])

HSP 1 Score: 228.0 bits (580), Expect = 2.8e-56
Identity = 119/215 (55.35%), Postives = 144/215 (66.98%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVERHG HNWN IAQ ++GRSGKSCRLRWFNQLDPRINR PFTQ+
Sbjct: 37  SRGHWRPAEDEKLRELVERHGAHNWNAIAQKVEGRSGKSCRLRWFNQLDPRINRTPFTQD 96

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWA----SKHRVKTMLG 125
           E++RLLA+H I GNRWAII+R FPGRTDNA+KNHWHVI AR+ + +    + HR+     
Sbjct: 97  EERRLLASHRIHGNRWAIIARHFPGRTDNALKNHWHVIMARSKRKSKSTQNHHRLFNFPN 156

Query: 126 I--------------IDIHSDSHQGVDFYNFLHINTESING--SEVTDHSRKDDEEVNQK 185
           I                   + H  V+FY+FLH+N + I    SEV D+SRKDDEEVNQ+
Sbjct: 157 IYYXXXXXXXXXXXXXXXXXNDHAVVEFYDFLHLNADYITATRSEVIDNSRKDDEEVNQQ 216

Query: 186 AATTADTSHDVVVRGTHKDEEKVVPFVDFFAAQTS 201
           A                 D+   +PF+DFF+AQTS
Sbjct: 217 A---------------QADDALPLPFIDFFSAQTS 236

[Close]

BLAST of Carg06989 vs. TAIR10
Match: AT1G17950.1 (myb domain protein 52)

HSP 1 Score: 194.9 bits (494), Expect = 4.8e-50
Identity = 114/257 (44.36%), Postives = 139/257 (54.09%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVE+ GPHNWN IAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4   SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTM------ 125
           E++RLLA+H I GNRW++I+R FPGRTDNAVKNHWHVI AR  +  SK R + +      
Sbjct: 64  EEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDGTV 123

Query: 126 --LGIIDIHSD-------------------SH---------------------------- 185
              G+I  + D                   SH                            
Sbjct: 124 AATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTPIQEGA 183

Query: 186 -----QGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 203
                + ++FYNFL +NT+S    E+ D+SRKD+EE               V +      
Sbjct: 184 IDQTKRPMEFYNFLQVNTDS-KIHELIDNSRKDEEE--------------DVDQNNRIPN 243

[Close]

BLAST of Carg06989 vs. TAIR10
Match: AT1G73410.1 (myb domain protein 54)

HSP 1 Score: 194.1 bits (492), Expect = 8.2e-50
Identity = 112/257 (43.58%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL++LVE++GPHNWN IA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5   SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRV--------- 125
           E++RLLAAH I GNRW+II+RLFPGRTDNAVKNHWHVI AR ++  SK R+         
Sbjct: 65  EEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLXXXXXXXXX 124

Query: 126 ------------------------------------------------KTMLGIIDIHSD 185
                                                           +   G I ++  
Sbjct: 125 XXXXXXXXXXXXXXXXXXXXXXXXXIFPADFINFPYKFSHINHLHFLKEFFTGKIALNHK 184

Query: 186 SHQG---VDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 203
           ++Q    ++FYNFL +NT+S N SE+       D++  Q   + +DT H           
Sbjct: 185 ANQSKKPMEFYNFLQVNTDS-NKSEII------DQDSGQSKRSDSDTKH----------- 243

[Close]

BLAST of Carg06989 vs. TAIR10
Match: AT1G69560.1 (myb domain protein 105)

HSP 1 Score: 177.6 bits (449), Expect = 7.9e-45
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELV  +GP NWN+IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRAR--TSKWASKHRVKTMLGI 123
           E++RL+ AH + GN+WA+I+RLFPGRTDN+VKNHWHVI AR    + +S  R KTM+ +
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSL 224

[Close]

BLAST of Carg06989 vs. TAIR10
Match: AT5G17800.1 (myb domain protein 56)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPTED KL+ELV + GP NWN+I+  L GRSGKSCRLRWFNQLDPRIN+  FT+E
Sbjct: 92  SRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFTEE 151

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSK 110
           E+ RLLAAH   GN+WA+ISRLFPGRTDNAVKNHWHVI AR ++
Sbjct: 152 EEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTR 195

[Close]

BLAST of Carg06989 vs. TAIR10
Match: AT1G26780.2 (myb domain protein 117)

HSP 1 Score: 172.6 bits (436), Expect = 2.6e-43
Identity = 74/100 (74.00%), Postives = 88/100 (88.00%), Query Frame = 0


Query: 7   RGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQEE 66
           RGHWRP ED KL+ELV  +GP NWN+IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+EE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 67  DQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRAR 107
           ++RL+ AH + GN+WA+I+RLFPGRTDN+VKNHWHV+ AR
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMAR 197

[Close]

BLAST of Carg06989 vs. Swiss-Prot
Match: sp|Q6R0C4|MYB52_ARATH (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 8.7e-49
Identity = 114/257 (44.36%), Postives = 139/257 (54.09%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVE+ GPHNWN IAQ L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 4   SRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFTEE 63

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTM------ 125
           E++RLLA+H I GNRW++I+R FPGRTDNAVKNHWHVI AR  +  SK R + +      
Sbjct: 64  EEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARRGRERSKLRPRGLGHDGTV 123

Query: 126 --LGIIDIHSD-------------------SH---------------------------- 185
              G+I  + D                   SH                            
Sbjct: 124 AATGMIGNYKDCDKERRLATTTAINFPYQFSHINHFQVLKEFLTGKIGFRNSTTPIQEGA 183

Query: 186 -----QGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 203
                + ++FYNFL +NT+S    E+ D+SRKD+EE               V +      
Sbjct: 184 IDQTKRPMEFYNFLQVNTDS-KIHELIDNSRKDEEE--------------DVDQNNRIPN 243

[Close]

BLAST of Carg06989 vs. Swiss-Prot
Match: sp|Q9FX36|MYB54_ARATH (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-48
Identity = 112/257 (43.58%), Postives = 140/257 (54.47%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL++LVE++GPHNWN IA  L GRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 5   SRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFTEE 64

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRV--------- 125
           E++RLLAAH I GNRW+II+RLFPGRTDNAVKNHWHVI AR ++  SK R+         
Sbjct: 65  EEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARRTRQTSKPRLXXXXXXXXX 124

Query: 126 ------------------------------------------------KTMLGIIDIHSD 185
                                                           +   G I ++  
Sbjct: 125 XXXXXXXXXXXXXXXXXXXXXXXXXIFPADFINFPYKFSHINHLHFLKEFFTGKIALNHK 184

Query: 186 SHQG---VDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 203
           ++Q    ++FYNFL +NT+S N SE+       D++  Q   + +DT H           
Sbjct: 185 ANQSKKPMEFYNFLQVNTDS-NKSEII------DQDSGQSKRSDSDTKH----------- 243

[Close]

BLAST of Carg06989 vs. Swiss-Prot
Match: sp|Q9SEZ4|MY105_ARATH (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 1.4e-43
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELV  +GP NWN+IA+ LQGRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRAR--TSKWASKHRVKTMLGI 123
           E++RL+ AH + GN+WA+I+RLFPGRTDN+VKNHWHVI AR    + +S  R KTM+ +
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARKFREQSSSYRRRKTMVSL 224

[Close]

BLAST of Carg06989 vs. Swiss-Prot
Match: sp|Q6R053|MYB56_ARATH (Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.1e-42
Identity = 78/104 (75.00%), Postives = 89/104 (85.58%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRPTED KL+ELV + GP NWN+I+  L GRSGKSCRLRWFNQLDPRIN+  FT+E
Sbjct: 92  SRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFTEE 151

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSK 110
           E+ RLLAAH   GN+WA+ISRLFPGRTDNAVKNHWHVI AR ++
Sbjct: 152 EEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARRTR 195

[Close]

BLAST of Carg06989 vs. Swiss-Prot
Match: sp|Q5NBM8|CSA_ORYSJ (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 173.3 bits (438), Expect = 2.7e-42
Identity = 74/101 (73.27%), Postives = 89/101 (88.12%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           +RGHWRP ED KL++LV ++GP NWN+IA+ L GRSGKSCRLRWFNQLDPRINR  FT+E
Sbjct: 48  ARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFTEE 107

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRAR 107
           E++RL+AAH   GN+WA+I+RLFPGRTDNAVKNHWHV+ AR
Sbjct: 108 EEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMAR 148

[Close]

BLAST of Carg06989 vs. TrEMBL
Match: tr|M5WDT4|M5WDT4_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021779mg PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 3.8e-57
Identity = 114/195 (58.46%), Postives = 142/195 (72.82%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           +RGHWRP ED KL+ELVER+GPHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR+PFT+E
Sbjct: 3   TRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRNPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTMLGIIDI 125
           E++RLLA+H I GNRWAII+RLFPGRTDNAVKNHWHVI AR  +  S+   K ++     
Sbjct: 63  EEERLLASHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARRCRERSRLHAK-LIRTSST 122

Query: 126 HSDSHQGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 185
            +   Q ++FY+FL +NTES NGSEV D++RKD+EEV+Q+A             G    +
Sbjct: 123 TNHKDQPIEFYDFLQVNTES-NGSEVIDNARKDEEEVDQEAV------------GQQISK 182

Query: 186 EKVVPFVDFFAAQTS 201
               PF++F +   S
Sbjct: 183 AAGAPFIEFLSVNGS 183

[Close]

BLAST of Carg06989 vs. TrEMBL
Match: tr|A0A0B0NW29|A0A0B0NW29_GOSAR (Transcription factor MYB44-like protein OS=Gossypium arboreum OX=29729 GN=F383_02330 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 113/202 (55.94%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVERHGPHNWN IAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKT------- 125
           E++RLL+AH I GNRWA+I+RLFPGRTDNAVKNHWHVI AR  +  S    KT       
Sbjct: 63  EEERLLSAHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRQRSSLYAKTSHTTPSK 122

Query: 126 -----MLG----------------------------IIDIHSDSHQGVDFYNFLHINTES 168
                 +G                             +    D  + ++FY+FL +NT+S
Sbjct: 123 PLHHSQMGAGHGFLPLLHKYKQGFPHNTCSPLNPNHCVTTTQDKKEAIEFYDFLQVNTDS 182

[Close]

BLAST of Carg06989 vs. TrEMBL
Match: tr|A0A1U8LYB4|A0A1U8LYB4_GOSHI (transcriptional activator Myb-like OS=Gossypium hirsutum OX=3635 GN=LOC107930984 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 113/202 (55.94%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVERHGPHNWN IAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKT------- 125
           E++RLL+AH I GNRWA+I+RLFPGRTDNAVKNHWHVI AR  +  S    KT       
Sbjct: 63  EEERLLSAHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRQRSSLYAKTSHTTPSK 122

Query: 126 -----MLG----------------------------IIDIHSDSHQGVDFYNFLHINTES 168
                 +G                             +    D  + ++FY+FL +NT+S
Sbjct: 123 PLHHSQMGAGHGFLPLLHKYKQGFPHNTCSPLNPNHCVTTTQDKKEAIEFYDFLQVNTDS 182

[Close]

BLAST of Carg06989 vs. TrEMBL
Match: tr|A0A2P5X083|A0A2P5X083_GOSBA (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23894 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 113/202 (55.94%), Postives = 133/202 (65.84%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVERHGPHNWN IAQ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   SRGHWRPAEDEKLRELVERHGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKT------- 125
           E++RLL+AH I GNRWA+I+RLFPGRTDNAVKNHWHVI AR  +  S    KT       
Sbjct: 63  EEERLLSAHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARRCRQRSSLYAKTSHTTPSK 122

Query: 126 -----MLG----------------------------IIDIHSDSHQGVDFYNFLHINTES 168
                 +G                             +    D  + ++FY+FL +NT+S
Sbjct: 123 PLHHSQMGAGHGFLPLLHKYKQGFPHNTCSPLNPNHCVTTTQDKKEAIEFYDFLQVNTDS 182

[Close]

BLAST of Carg06989 vs. TrEMBL
Match: tr|A0A067L621|A0A067L621_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20926 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 3.0e-54
Identity = 112/197 (56.85%), Postives = 136/197 (69.04%), Query Frame = 0


Query: 6   SRGHWRPTEDHKLQELVERHGPHNWNVIAQSLQGRSGKSCRLRWFNQLDPRINRDPFTQE 65
           SRGHWRP ED KL+ELVER+GPHNWN IA+ LQGRSGKSCRLRWFNQLDPRINR PFT+E
Sbjct: 3   SRGHWRPAEDEKLKELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFTEE 62

Query: 66  EDQRLLAAHTIPGNRWAIISRLFPGRTDNAVKNHWHVIRARTSKWASKHRVKTMLGIIDI 125
           E++RLLA+H + GNRWA+I+RLFPGRTDNAVKNHWHVI AR  K                
Sbjct: 63  EEERLLASHRVHGNRWAVIARLFPGRTDNAVKNHWHVIMARKCK---------------- 122

Query: 126 HSDSHQGVDFYNFLHINTESINGSEVTDHSRKDDEEVNQKAATTADTSHDVVVRGTHKDE 185
                Q V+FY+FL INT+S + SEV D++R+DDEEV+Q+A                +  
Sbjct: 123 ----KQAVEFYDFLQINTDS-SKSEVIDNARRDDEEVDQEA--------------MEEQR 164

Query: 186 EKVVPFVDFFAAQTSIS 203
           +  +PF+DF +   S S
Sbjct: 183 KAGLPFIDFLSLGKSSS 164

The following BLAST results are available for this feature:

BLAST of Carg06989 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022949244.1	6.6e-106	93.17	transcription factor MYB52-like isoform X1 [Cucurbita moschata]	[more]
XP_022998175.1	5.6e-97	86.14	transcription factor MYB52-like [Cucurbita maxima]	[more]
XP_022949245.1	1.4e-92	85.85	transcription factor MYB52-like isoform X2 [Cucurbita moschata]	[more]
XP_021907727.1	5.7e-57	55.02	transcription factor MYB52 [Carica papaya]	[more]
XP_022137548.1	2.8e-56	55.35	transcription factor MYB52-like [Momordica charantia]	[more]

BLAST of Carg06989 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17950.1	4.8e-50	44.36	myb domain protein 52	[more]
AT1G73410.1	8.2e-50	43.58	myb domain protein 54	[more]
AT1G69560.1	7.9e-45	68.07	myb domain protein 105	[more]
AT5G17800.1	1.1e-43	75.00	myb domain protein 56	[more]
AT1G26780.2	2.6e-43	74.00	myb domain protein 117	[more]

BLAST of Carg06989 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6R0C4\|MYB52_ARATH	8.7e-49	44.36	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
sp\|Q9FX36\|MYB54_ARATH	1.5e-48	43.58	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1	[more]
sp\|Q9SEZ4\|MY105_ARATH	1.4e-43	68.07	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]
sp\|Q6R053\|MYB56_ARATH	2.1e-42	75.00	Transcription factor MYB56 OS=Arabidopsis thaliana OX=3702 GN=MYB56 PE=1 SV=1	[more]
sp\|Q5NBM8\|CSA_ORYSJ	2.7e-42	73.27	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]

BLAST of Carg06989 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5WDT4\|M5WDT4_PRUPE	3.8e-57	58.46	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa021779mg PE=4 SV=1	[more]
tr\|A0A0B0NW29\|A0A0B0NW29_GOSAR	2.1e-55	55.94	Transcription factor MYB44-like protein OS=Gossypium arboreum OX=29729 GN=F383_0...	[more]
tr\|A0A1U8LYB4\|A0A1U8LYB4_GOSHI	2.1e-55	55.94	transcriptional activator Myb-like OS=Gossypium hirsutum OX=3635 GN=LOC107930984...	[more]
tr\|A0A2P5X083\|A0A2P5X083_GOSBA	2.1e-55	55.94	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA23894 PE=4 SV...	[more]
tr\|A0A067L621\|A0A067L621_JATCU	3.0e-54	56.85	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20926 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg06989-RA	Carg06989-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 6..55 e-value: 7.5E-12 score: 55.4 coord: 58..106 e-value: 7.6E-13 score: 58.7
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 7..52 e-value: 5.8E-17 score: 61.5 coord: 59..102 e-value: 1.8E-12 score: 47.1
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 61..101 e-value: 8.65789E-10 score: 50.6518
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 10..51 e-value: 3.62017E-11 score: 54.5038
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 7..59 e-value: 1.5E-21 score: 78.0
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 61..120 e-value: 2.0E-15 score: 58.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..165
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR10641:SF941	MYB TRANSCRIPTION FACTOR	coord: 4..162
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 4..162
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 2..53 score: 14.885
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 54..108 score: 23.586
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 5..100

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg06989	Cla018657	Watermelon (97103) v1	carwmB0519
Carg06989	Csa1G029570	Cucumber (Chinese Long) v2	carcuB0546
Carg06989	ClCG04G012700	Watermelon (Charleston Gray)	carwcgB0508
Carg06989	CSPI01G04880	Wild cucumber (PI 183967)	carcpiB0553
Carg06989	Cucsa.112050	Cucumber (Gy14) v1	carcgyB0596
Carg06989	CmaCh01G007520	Cucurbita maxima (Rimu)	carcmaB0731
Carg06989	CmoCh01G007870	Cucurbita moschata (Rifu)	carcmoB0708
Carg06989	Lsi02G000200	Bottle gourd (USVL1VR-Ls)	carlsiB474
Carg06989	Cp4.1LG02g09990	Cucurbita pepo (Zucchini)	carcpeB0738
Carg06989	CsGy1G004740	Cucumber (Gy14) v2	carcgybB0522
Carg06989	MELO3C035775.2	Melon (DHL92) v3.6.1	carmedB0529
Carg06989	CsaV3_1G004830	Cucumber (Chinese Long) v3	carcucB0552
Carg06989	Cla97C04G079740	Watermelon (97103) v2	carwmbB0549
Carg06989	Bhi08G001601	Wax gourd	carwgoB0631

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg06989	Cucumber (Gy14) v2	carcgybB0526
Carg06989	Cucumber (Gy14) v1	carcgyB0597
Carg06989	Wild cucumber (PI 183967)	carcpiB0556
Carg06989	Cucumber (Chinese Long) v2	carcuB0549
Carg06989	Cucumber (Chinese Long) v3	carcucB0555
Carg06989	Melon (DHL92) v3.5.1	carmeB0523