CsaV3_1G004830 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G004830
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	MYB transcription factor
Location	chr1 : 3144705 .. 3146035 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATACACACGCACACAGACACAACACATATATTTCGTATTATTATTTGTTGAAATCAAAACAAGATCTGAATTTAGTTTAGGATAATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGGTTCAACCAGTTGGATCCTCGAATCAACAGAACCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATAATAACAATAATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTAATATTTCATTCATCCCCAAACCACCACCTGGTAATTAATTATATACATTATTCTTTCATTTTTTTTATCTTTATATATATGTATGTGTGTGTTTTCATTATTATAACTTATATATTAATTATATGTATCTATGGCAGATGATGCAGCAGCGGCGGCGGCGGCGCATAGTAGTTGTTCCATTATTCATTATTACGACTTTCTCCAAGTTAATAGTACGGATTCTATGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAAGATTATGAAGAGGTGAATAATAATAACAATGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAGTAACAACACATCCATCTCATGATCCTCCTAAACACACACACACACACACATATATAACCAACCCAAAAAAAATTAAACCTCCTTTATATATATATTCTCACATTTCCTCTAACTCACTTGGGGCATCATGGAAATCACAATACCCCGCCCCCATATATACATACATACCATATATATATAGTATCCATTATAATGCTGCTAATTAAATTGTACACACTTACACACATCACTTAATATTTTCTATTTTTTTTCATGATCTCTATTGTCTCATCCCTTGTCCATAATCTTGTTAACTAAGATTAGATATGATGTGATGTGATATATAGATATTGTGAGTAGAATTTTAGGCAAAAGATGTGGTTACTTCTCCAATATTGTTACTTGCAACTATATAAAGAGAATAAATCAAATAAGAGATATCTAACCCTAACTCAGCATCAAGAGAGAAATATATACAG

mRNA sequence

ATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGGTTCAACCAGTTGGATCCTCGAATCAACAGAACCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATAATAACAATAATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTAATATTTCATTCATCCCCAAACCACCACCTGATGATGCAGCAGCGGCGGCGGCGGCGCATAGTAGTTGTTCCATTATTCATTATTACGACTTTCTCCAAGTTAATAGTACGGATTCTATGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAAGATTATGAAGAGGTGAATAATAATAACAATGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAGTAACAACACATCCATCTCATGA

Coding sequence (CDS)

ATGTGCAGCAGAGGGCACTGGCGGCCTGCAGAAGACGAGAAGCTTCGAGAGCTGGTGGAGCGTTACGGACCTCATAACTGGAACGCCATAGCTCAAAAGCTTCAAGGAAGATCTGGGAAGAGCTGCCGCTTGAGATGGTTCAACCAGTTGGATCCTCGAATCAACAGAACCCCTTTCACCGAGGAGGAAGAAGAGAGGCTGATGGCGTCCCACAGGGTTCATGGCAACAGATGGGCCATCATCGCAAGGCTTTTCCCCGGCCGCACCGATAACGCAGTCAAGAACCACTGGCACGTCATCATGGCTCGTAGGTCTAGAAATAAATCCAAAACCCAAACCCTAACACAAACCCTAACCCAAACACACAATAATAATAATAACAATAATCGTCTTCTTCTTTCTTCCTTTCTCCAACTCCATGCATATCCCACTTCTAATATTTCATTCATCCCCAAACCACCACCTGATGATGCAGCAGCGGCGGCGGCGGCGCATAGTAGTTGTTCCATTATTCATTATTACGACTTTCTCCAAGTTAATAGTACGGATTCTATGAATGGAAGTGAAGTGATAGATAACTCATCAAGAAAAGAAGATTATGAAGAGGTGAATAATAATAACAATGGAGAACAACAGGCGGTACTACTTCCCTTCATTGATTTTTTTTCTGCCTCCAGTAACAACACATCCATCTCATGA

Protein sequence

MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRNKSKTQTLTQTLTQTHNNNNNNNRLLLSSFLQLHAYPTSNISFIPKPPPDDAAAAAAAHSSCSIIHYYDFLQVNSTDSMNGSEVIDNSSRKEDYEEVNNNNNGEQQAVLLPFIDFFSASSNNTSIS

Homology

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BLAST of CsaV3_1G004830 vs. NCBI nr
Match: XP_011649446.1 (PREDICTED: transcriptional activator Myb-like [Cucumis sativus] >KGN63930.1 hypothetical protein Csa_1G029570 [Cucumis sativus])

HSP 1 Score: 260.0 bits (663), Expect = 7.7e-66
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 153
           XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK
Sbjct: 121 XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 152

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BLAST of CsaV3_1G004830 vs. NCBI nr
Match: XP_008455801.1 (PREDICTED: transcriptional activator Myb-like [Cucumis melo])

HSP 1 Score: 251.1 bits (640), Expect = 3.6e-63
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR-XXXXXXXXXXXXXXX 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR  XXXXXXXXXXXXXX
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 153
           XXXXXXXXXXX LLSSFLQLHAYPTS ISF+PK
Sbjct: 121 XXXXXXXXXXXLLLSSFLQLHAYPTSTISFVPK 153

[Close]

BLAST of CsaV3_1G004830 vs. NCBI nr
Match: XP_023001003.1 (transcription factor MYB52-like [Cucurbita maxima])

HSP 1 Score: 225.7 bits (574), Expect = 1.6e-55
Identity = 101/104 (97.12%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAED+KLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDDKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMAR+
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARK 104

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BLAST of CsaV3_1G004830 vs. NCBI nr
Match: OMP11013.1 (hypothetical protein CCACVL1_00729 [Corchorus capsularis])

HSP 1 Score: 224.9 bits (572), Expect = 2.8e-55
Identity = 99/104 (95.19%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIA+KLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMARR
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104

[Close]

BLAST of CsaV3_1G004830 vs. NCBI nr
Match: PSS08288.1 (Transcription factor like [Actinidia chinensis var. chinensis])

HSP 1 Score: 224.2 bits (570), Expect = 4.7e-55
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIA+KLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ SHR+HGNRWAIIARLFPGRTDNAVKNHWHVIMARR
Sbjct: 61  EEEEERLLTSHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 104

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BLAST of CsaV3_1G004830 vs. TAIR10
Match: AT1G17950.1 (myb domain protein 52)

HSP 1 Score: 218.0 bits (554), Expect = 6.1e-57
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARR 105

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BLAST of CsaV3_1G004830 vs. TAIR10
Match: AT1G73410.1 (myb domain protein 54)

HSP 1 Score: 214.9 bits (546), Expect = 5.2e-56
Identity = 94/104 (90.38%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARR 106

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BLAST of CsaV3_1G004830 vs. TAIR10
Match: AT1G69560.1 (myb domain protein 105)

HSP 1 Score: 192.2 bits (487), Expect = 3.6e-49
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62
           SRGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARK 207

[Close]

BLAST of CsaV3_1G004830 vs. TAIR10
Match: AT1G26780.2 (myb domain protein 117)

HSP 1 Score: 189.9 bits (481), Expect = 1.8e-48
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARK 198

[Close]

BLAST of CsaV3_1G004830 vs. TAIR10
Match: AT5G17800.1 (myb domain protein 56)

HSP 1 Score: 185.7 bits (470), Expect = 3.4e-47
Identity = 80/104 (76.92%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           +CSRGHWRP ED KL+ELV ++GP NWN I+  L GRSGKSCRLRWFNQLDPRIN+  FT
Sbjct: 90  VCSRGHWRPTEDAKLKELVAQFGPQNWNLISNHLLGRSGKSCRLRWFNQLDPRINKRAFT 149

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEE RL+A+HR +GN+WA+I+RLFPGRTDNAVKNHWHVIMARR
Sbjct: 150 EEEEFRLLAAHRAYGNKWALISRLFPGRTDNAVKNHWHVIMARR 193

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BLAST of CsaV3_1G004830 vs. Swiss-Prot
Match: sp|Q6R0C4|MYB52_ARATH (Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 1.1e-55
Identity = 95/104 (91.35%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVE++GPHNWNAIAQKL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDPRINRNPFT 61

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ASHR+HGNRW++IAR FPGRTDNAVKNHWHVIMARR
Sbjct: 62  EEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARR 105

[Close]

BLAST of CsaV3_1G004830 vs. Swiss-Prot
Match: sp|Q9FX36|MYB54_ARATH (Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 9.3e-55
Identity = 94/104 (90.38%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKL++LVE+YGPHNWNAIA KL GRSGKSCRLRWFNQLDPRINR PFT
Sbjct: 3   MCSRGHWRPAEDEKLKDLVEQYGPHNWNAIALKLPGRSGKSCRLRWFNQLDPRINRNPFT 62

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+A+HR+HGNRW+IIARLFPGRTDNAVKNHWHVIMARR
Sbjct: 63  EEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARR 106

[Close]

BLAST of CsaV3_1G004830 vs. Swiss-Prot
Match: sp|Q5NBM8|CSA_ORYSJ (Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV=2)

HSP 1 Score: 197.6 bits (501), Expect = 1.5e-49
Identity = 85/104 (81.73%), Postives = 96/104 (92.31%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           +C+RGHWRPAED KL++LV +YGP NWN IA+KL GRSGKSCRLRWFNQLDPRINR  FT
Sbjct: 46  LCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRINRRAFT 105

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERLMA+HR +GN+WA+IARLFPGRTDNAVKNHWHV+MARR
Sbjct: 106 EEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARR 149

[Close]

BLAST of CsaV3_1G004830 vs. Swiss-Prot
Match: sp|Q9SEZ4|MY105_ARATH (Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 6.5e-48
Identity = 85/102 (83.33%), Postives = 94/102 (92.16%), Query Frame = 0


Query: 3   SRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEE 62
           SRGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEE
Sbjct: 106 SRGHWRPAEDTKLKELVAVYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEE 165

Query: 63  EEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHVIMAR+
Sbjct: 166 EEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARK 207

[Close]

BLAST of CsaV3_1G004830 vs. Swiss-Prot
Match: sp|Q9LQX5|MY117_ARATH (Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 3.2e-47
Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 4   RGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFTEEE 63
           RGHWRPAED KL+ELV  YGP NWN IA+KLQGRSGKSCRLRWFNQLDPRINR  FTEEE
Sbjct: 98  RGHWRPAEDVKLKELVSIYGPQNWNLIAEKLQGRSGKSCRLRWFNQLDPRINRRAFTEEE 157

Query: 64  EERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EERLM +HR++GN+WA+IARLFPGRTDN+VKNHWHV+MAR+
Sbjct: 158 EERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARK 198

[Close]

BLAST of CsaV3_1G004830 vs. TrEMBL
Match: tr|A0A0A0LPV0|A0A0A0LPV0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 5.1e-66
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 153
           XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK
Sbjct: 121 XXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 152

[Close]

BLAST of CsaV3_1G004830 vs. TrEMBL
Match: tr|A0A1S3C1Q2|A0A1S3C1Q2_CUCME (transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 SV=1)

HSP 1 Score: 251.1 bits (640), Expect = 2.4e-63
Identity = 147/153 (96.08%), Postives = 149/153 (97.39%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR-XXXXXXXXXXXXXXX 120
           EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR  XXXXXXXXXXXXXX
Sbjct: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARRSRXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXLLSSFLQLHAYPTSNISFIPK 153
           XXXXXXXXXXX LLSSFLQLHAYPTS ISF+PK
Sbjct: 121 XXXXXXXXXXXLLLSSFLQLHAYPTSTISFVPK 153

[Close]

BLAST of CsaV3_1G004830 vs. TrEMBL
Match: tr|A0A1R3KV89|A0A1R3KV89_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_00729 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.8e-55
Identity = 99/104 (95.19%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MCSRGHWRPAEDEKLRELVERYGPHNWNAIA+KLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMARR
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104

[Close]

BLAST of CsaV3_1G004830 vs. TrEMBL
Match: tr|A0A2R6QI58|A0A2R6QI58_ACTCH (Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc18623 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.1e-55
Identity = 99/104 (95.19%), Postives = 103/104 (99.04%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIA+KLQGRSGKSCRLRWFNQLDPRINRTPFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRTPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ SHR+HGNRWAIIARLFPGRTDNAVKNHWHVIMARR
Sbjct: 61  EEEEERLLTSHRIHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 104

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BLAST of CsaV3_1G004830 vs. TrEMBL
Match: tr|V4VNT6|V4VNT6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021859mg PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 4.1e-55
Identity = 98/104 (94.23%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MCSRGHWRPAEDEKLRELVERYGPHNWNAIAQKLQGRSGKSCRLRWFNQLDPRINRTPFT 60
           MC+RGHWRPAEDEKLRELVERYGPHNWNAIA+KLQGRSGKSCRLRWFNQLDPRINR+PFT
Sbjct: 1   MCTRGHWRPAEDEKLRELVERYGPHNWNAIAEKLQGRSGKSCRLRWFNQLDPRINRSPFT 60

Query: 61  EEEEERLMASHRVHGNRWAIIARLFPGRTDNAVKNHWHVIMARR 105
           EEEEERL+ASHR+HGNRWA+IARLFPGRTDNAVKNHWHVIMARR
Sbjct: 61  EEEEERLLASHRIHGNRWAVIARLFPGRTDNAVKNHWHVIMARR 104

The following BLAST results are available for this feature:

BLAST of CsaV3_1G004830 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649446.1	7.7e-66	100.00	PREDICTED: transcriptional activator Myb-like [Cucumis sativus] >KGN63930.1 hypo...	[more]
XP_008455801.1	3.6e-63	96.08	PREDICTED: transcriptional activator Myb-like [Cucumis melo]	[more]
XP_023001003.1	1.6e-55	97.12	transcription factor MYB52-like [Cucurbita maxima]	[more]
OMP11013.1	2.8e-55	95.19	hypothetical protein CCACVL1_00729 [Corchorus capsularis]	[more]
PSS08288.1	4.7e-55	95.19	Transcription factor like [Actinidia chinensis var. chinensis]	[more]

BLAST of CsaV3_1G004830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G17950.1	6.1e-57	91.35	myb domain protein 52	[more]
AT1G73410.1	5.2e-56	90.38	myb domain protein 54	[more]
AT1G69560.1	3.6e-49	83.33	myb domain protein 105	[more]
AT1G26780.2	1.8e-48	82.18	myb domain protein 117	[more]
AT5G17800.1	3.4e-47	76.92	myb domain protein 56	[more]

BLAST of CsaV3_1G004830 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q6R0C4\|MYB52_ARATH	1.1e-55	91.35	Transcription factor MYB52 OS=Arabidopsis thaliana OX=3702 GN=MYB52 PE=2 SV=1	[more]
sp\|Q9FX36\|MYB54_ARATH	9.3e-55	90.38	Transcription factor MYB54 OS=Arabidopsis thaliana OX=3702 GN=MYB54 PE=2 SV=1	[more]
sp\|Q5NBM8\|CSA_ORYSJ	1.5e-49	81.73	Transcription factor CSA OS=Oryza sativa subsp. japonica OX=39947 GN=CSA PE=2 SV...	[more]
sp\|Q9SEZ4\|MY105_ARATH	6.5e-48	83.33	Transcription factor MYB105 OS=Arabidopsis thaliana OX=3702 GN=MYB105 PE=1 SV=1	[more]
sp\|Q9LQX5\|MY117_ARATH	3.2e-47	82.18	Transcription factor MYB117 OS=Arabidopsis thaliana OX=3702 GN=MYB117 PE=2 SV=1	[more]

BLAST of CsaV3_1G004830 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LPV0\|A0A0A0LPV0_CUCSA	5.1e-66	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G029570 PE=4 SV=1	[more]
tr\|A0A1S3C1Q2\|A0A1S3C1Q2_CUCME	2.4e-63	96.08	transcriptional activator Myb-like OS=Cucumis melo OX=3656 GN=LOC103495663 PE=4 ...	[more]
tr\|A0A1R3KV89\|A0A1R3KV89_COCAP	1.8e-55	95.19	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_00729 PE=4 ...	[more]
tr\|A0A2R6QI58\|A0A2R6QI58_ACTCH	3.1e-55	95.19	Transcription factor like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE...	[more]
tr\|V4VNT6\|V4VNT6_9ROSI	4.1e-55	94.23	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10021859mg PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom
IPR001005	SANT/Myb

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0010031	circumnutation
biological_process	GO:0010629	negative regulation of gene expression
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G004830.1	CsaV3_1G004830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 3..52 e-value: 3.6E-15 score: 66.4 coord: 55..103 e-value: 5.4E-14 score: 62.5
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 4..49 e-value: 6.8E-18 score: 64.5 coord: 56..98 e-value: 1.7E-13 score: 50.4
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 7..48 e-value: 1.13379E-13 score: 61.8226
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 58..98 e-value: 3.4162E-10 score: 52.5778
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 57..132 e-value: 4.1E-18 score: 67.2
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 4..56 e-value: 1.5E-22 score: 81.2
None	No IPR available	PANTHER	PTHR10641:SF578	SUBFAMILY NOT NAMED	coord: 1..129
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..129
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 55..105 score: 21.063
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 1..54 score: 25.942
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 4..97

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G004830	CSPI01G04880	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G004830	Cucsa.112050	Cucumber (Gy14) v1	cgycucB143
CsaV3_1G004830	CmaCh01G007520	Cucurbita maxima (Rimu)	cmacucB0519
CsaV3_1G004830	CmaCh13G011460	Cucurbita maxima (Rimu)	cmacucB0247
CsaV3_1G004830	CmoCh13G012040	Cucurbita moschata (Rifu)	cmocucB0233
CsaV3_1G004830	CmoCh01G007870	Cucurbita moschata (Rifu)	cmocucB0506
CsaV3_1G004830	Cp4.1LG02g09990	Cucurbita pepo (Zucchini)	cpecucB0660
CsaV3_1G004830	CsGy1G004740	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G004830	Carg06989	Silver-seed gourd	carcucB0552
CsaV3_1G004830	Cla018657	Watermelon (97103) v1	cucwmB068
CsaV3_1G004830	ClCG04G012700	Watermelon (Charleston Gray)	cucwcgB061
CsaV3_1G004830	Lsi02G000200	Bottle gourd (USVL1VR-Ls)	cuclsiB037
CsaV3_1G004830	MELO3C035775.2	Melon (DHL92) v3.6.1	cucmedB016
CsaV3_1G004830	Cla97C04G079740	Watermelon (97103) v2	cucwmbB052
CsaV3_1G004830	Bhi08G001601	Wax gourd	cucwgoB059

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G004830	Silver-seed gourd	carcucB0555
CsaV3_1G004830	Cucurbita maxima (Rimu)	cmacucB0513
CsaV3_1G004830	Cucurbita moschata (Rifu)	cmocucB0501
CsaV3_1G004830	Cucurbita pepo (Zucchini)	cpecucB0665