Lsi01G005990 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G005990
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING finger protein
Locationchr01 : 4794629 .. 4795198 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

mRNA sequence

ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

Coding sequence (CDS)

ATGAATTCAGTGGACGATCTCGGTTACAGTTACAGACGCCTTCTTAAAGATTCCTTATTCGAACATCCATTTGGAAGCCGAGAAAGAATCTTTACCATATGTGCGACTTCTGTCATTGCAGCCGTGTTTGTAATCTCTTTGTTCATCACCCTCTTCACCTGCTTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATCTACCAATCAACTCACTGCCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTCCATCGTCGTCTTATTGTTTTATGTCATCGTTTGAGTCCAGGAACTGCGTCATATGTTTGGCGGAGTTCGAGCACGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGCGTTTCATAAAGGGTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCATACAATCGAGGAGATTGGGACCGTGAGGAGACCAGTTTGTTCAAATTATTGGGCCCGAAATCCGGCCTTCATATTGGCCTTCGGCCTTGGTAGTAATGTCCCATTGCCCTCTCAACTGTAA

Protein sequence

MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGLGSNVPLPSQL
Homology
[Close]
BLAST of Lsi01G005990 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 6.0e-12
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 55  FRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEH 114
           ++RQL        S      + A+PV++Y ++  +           E  +C +CL EF  
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSE 163

Query: 115 GDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCR 149
            D+LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 DDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Lsi01G005990 vs. Swiss-Prot
Match: ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 63  SSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLP 122
           SS  P     + +  +P+++Y   + +   +    S+   R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTV 159
            C HAFH  CID+WL     +CPLCR   +   G +
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVL 208

[Close]
BLAST of Lsi01G005990 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 104 NCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRP 162
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of Lsi01G005990 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 68  SSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHA 127
           S      + A+PV++YG+++ S    +         +C +CL EF   D+LR+LP C HA
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPF---------DCAVCLNEFSDTDKLRLLPVCSHA 238

Query: 128 FHKGCIDQWLPLKSLHCPLCR 149
           FH  CID WL L +  CPLCR
Sbjct: 239 FHLHCIDTWL-LSNSTCPLCR 249

[Close]
BLAST of Lsi01G005990 vs. Swiss-Prot
Match: ATL42_ARATH (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 36/100 (36.00%), Postives = 56/100 (56.00%), Query Frame = 1 

Query: 60  NSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 119
           ++ SS   S      + ++P++ +  L  S           +  +C +CL++FE  + LR
Sbjct: 88  STASSDRFSGLDKTAIESLPLFRFSALKGSK----------QGLDCSVCLSKFESVEILR 147

Query: 120 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDH-TIEEIGTV 159
           +LP C+HAFH GCIDQWL  +   CPLCRD  ++EE  +V
Sbjct: 148 LLPKCRHAFHIGCIDQWLE-QHATCPLCRDRVSMEEDSSV 176

[Close]
BLAST of Lsi01G005990 vs. TrEMBL
Match: A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 8.8e-87
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVDDLGYS RRLLKDSLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 120
           SPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSNVPLPSQL 190
           GSN PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]
BLAST of Lsi01G005990 vs. TrEMBL
Match: A0A0D2SGF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.5e-19
Identity = 50/137 (36.50%), Postives = 76/137 (55.47%), Query Frame = 1 

Query: 33  ICATSVIAAVFVISLFITLFTCFRRQLNSPSSK---PPSSTSTNQLTAMPVYIYGDLSSS 92
           I +T ++A + +  +F  ++ C  R  N  S +    P  +  ++L  +PV +YG+    
Sbjct: 35  IWSTVMVAVISLGIIFFLIYKCIFRSPNHSSDENKTEPKPSVDSELDQIPVLVYGESMMP 94

Query: 93  PSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRD 152
            S   C  +  E   C ICL E+ HG+ +RVLP CKH FHK CI++WL + SLHCP+CRD
Sbjct: 95  SSEPSCSDTISELETCAICLEEYVHGERVRVLPRCKHMFHKDCIEEWLEVPSLHCPICRD 154

Query: 153 HTIEE-IGTVRRPVCSN 166
             +E  + + R   C N
Sbjct: 155 KVLEHCLQSARSNNCRN 171

[Close]
BLAST of Lsi01G005990 vs. TrEMBL
Match: A5B1V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-18
Identity = 62/163 (38.04%), Postives = 91/163 (55.83%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICA-TSVIAAVFVISLFITLFTCFRRQL 60
           +++VD++    RRLL+ S  E  +  R    TICA  +     FV   FI   T  R + 
Sbjct: 2   ISAVDEI----RRLLESSSEESIY--RSLTTTICAFVAGFGMAFVFGAFIVSCTIRRLRG 61

Query: 61  NSPSSKPPSSTST----------NQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICL 120
               S+   ST++            + A+PV+IYG     PSSS    +S+E + C ICL
Sbjct: 62  YGDESQHHGSTASAASSSGQRRREHVVAIPVHIYGP---GPSSSCAATTSYELQACAICL 121

Query: 121 AEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTI 153
            E+E+G+ + VLP CKH FHK CI+QW+P+KS++CP+CR  T+
Sbjct: 122 CEYENGERVSVLPRCKHMFHKDCIEQWVPVKSVNCPICRAPTV 155

[Close]
BLAST of Lsi01G005990 vs. TrEMBL
Match: A0A061DFR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000202 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 6.6e-18
Identity = 66/201 (32.84%), Postives = 95/201 (47.26%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFT---ICATSVIAAVFVISLFITLFTCFR- 60
           M    +   S++ LL+D       G    +     I  T++ A + +  + + +  CF  
Sbjct: 1   MKPATNFSLSHKHLLRDYTPSPSNGHCRTVVVNHRIVVTTMAATISLCLIVLLICKCFHL 60

Query: 61  --RQLNSPSSKPPSSTSTNQLTAMPVYIYGDL---SSSPSSSYCFMSSFESRNCVICLAE 120
             R  N  +  P + +  ++L ++P  +Y +    SS PS S       E  +C ICL  
Sbjct: 61  SNRSRNPTNVNPRAPSIDDELASIPALVYAESTLWSSQPSCSDDDSLELEE-HCAICLEG 120

Query: 121 FEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNY--WAR 180
           + HGD + VLP CKH FHK CI++WL + SLHCP+CRD  +E      R    N      
Sbjct: 121 YVHGDSVSVLPRCKHMFHKKCIEEWLQVPSLHCPICRDQILERCLQSTRSNGRNQRDGIA 180

Query: 181 NPAFILAFGLGSNVPL-PSQL 190
           NP   LAF LG N  L PS L
Sbjct: 181 NPFPSLAFNLGGNYALYPSVL 200

[Close]
BLAST of Lsi01G005990 vs. TrEMBL
Match: V4RVB6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.5e-17
Identity = 51/142 (35.92%), Postives = 82/142 (57.75%), Query Frame = 1 

Query: 18  SLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLNSPSSKPPSSTS----TN 77
           S + H + +R  +  I A  ++  +    L  T++ CF R   SP  +           +
Sbjct: 8   SCYYHKYTTRT-LSIIIAIIIVVCLICFLLIKTVYRCFNRSNQSPHGQQECQDCHRHRED 67

Query: 78  QLTAMPVYIYGDLSSS-PSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHAFHKGC 137
           +L A+PV+ YGD+++  P++S    ++F ++ C ICL ++   D +R+LP C H FHK C
Sbjct: 68  KLAAIPVFAYGDVATGLPTNS---STTFANKVCAICLDDYADTDVVRILPRCLHVFHKEC 127

Query: 138 IDQWLPLKSLHCPLCRDHTIEE 155
           ID+WL +KSL CP+CRD TIE+
Sbjct: 128 IDKWLCVKSLQCPICRDPTIEQ 145

[Close]
BLAST of Lsi01G005990 vs. TAIR10
Match: AT1G23980.1 (AT1G23980.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-13
Identity = 36/94 (38.30%), Postives = 50/94 (53.19%), Query Frame = 1 

Query: 55  FRRQLNSPSSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEH 114
           ++RQL        S      + A+PV++Y ++  +           E  +C +CL EF  
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSE 163

Query: 115 GDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCR 149
            D+LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 DDKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Lsi01G005990 vs. TAIR10
Match: AT3G18930.1 (AT3G18930.1 RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.7e-13
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1 

Query: 63  SSKPPSSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLP 122
           SS  P     + +  +P+++Y   + +   +    S+   R+C +CL EFE GD +R LP
Sbjct: 114 SSYSPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLP 173

Query: 123 NCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTV 159
            C HAFH  CID+WL     +CPLCR   +   G +
Sbjct: 174 LCFHAFHLECIDEWL-RSHPNCPLCRTAILGSAGVL 208

[Close]
BLAST of Lsi01G005990 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.7e-12
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 104 NCVICLAEFEHGDELRVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRP 162
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of Lsi01G005990 vs. TAIR10
Match: AT4G33565.1 (AT4G33565.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 46/150 (30.67%), Postives = 72/150 (48.00%), Query Frame = 1 

Query: 22  HPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLNSPSSKPPSSTSTNQ------- 81
           H   + +RI  I A+S+I  +F+++L +  F  + R+  S ++    S    +       
Sbjct: 116 HHDDNLKRILIISASSIITTLFLLTLLVLCFKFYYRRRRSITTSRRWSMEEARNWDFDGP 175

Query: 82  ---LTAMPVYIYGDLSSSP----SSSYCFMSS----FESRNCVICLAEFEHGDELRVLPN 141
              +   P++    +  +P    S   C  S      E  +C +CL+EFE  + LR+LP 
Sbjct: 176 APVIVDHPIWHIRTIGLNPTVISSIKVCQYSKKDGVVEGTDCSVCLSEFEEEETLRLLPK 235

Query: 142 CKHAFHKGCIDQWLPLKSLHCPLCRDHTIE 154
           CKHAFH  CID WL     +CPLCR   +E
Sbjct: 236 CKHAFHLYCIDTWL-RSHTNCPLCRAPIVE 264

[Close]
BLAST of Lsi01G005990 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-12
Identity = 33/81 (40.74%), Postives = 46/81 (56.79%), Query Frame = 1 

Query: 68  SSTSTNQLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHA 127
           S      + A+PV++YG+++ S    +         +C +CL EF   D+LR+LP C HA
Sbjct: 179 SGLDQTAIDALPVFLYGNVTISLEQPF---------DCAVCLNEFSDTDKLRLLPVCSHA 238

Query: 128 FHKGCIDQWLPLKSLHCPLCR 149
           FH  CID WL L +  CPLCR
Sbjct: 239 FHLHCIDTWL-LSNSTCPLCR 249

[Close]
BLAST of Lsi01G005990 vs. NCBI nr
Match: gi|778722491|ref|XP_011658497.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.3e-86
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVDDLGYS RRLLKDSLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQLN
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 120
           SPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESR CVICLAEFE+GDELR
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRTCVICLAEFEYGDELR 120

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRPVCSNYW+RNPAFILAFGL
Sbjct: 121 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 180

Query: 181 GSNVPLPSQL 190
           GSN PLPSQL
Sbjct: 181 GSNAPLPSQL 189

[Close]
BLAST of Lsi01G005990 vs. NCBI nr
Match: gi|700193713|gb|KGN48917.1| (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 327.8 bits (839), Expect = 1.3e-86
Identity = 160/190 (84.21%), Postives = 173/190 (91.05%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDSLFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQLN 60
           MNSVDDLGYS RRLLKDSLFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELR 120
           SPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFGL 180
           VLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSNVPLPSQL 190
           GSN PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]
BLAST of Lsi01G005990 vs. NCBI nr
Match: gi|659080492|ref|XP_008440821.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 6.2e-86
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDS-LFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKDS LFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 120

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 180

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 181 LGSNAPLPSQL 190

[Close]
BLAST of Lsi01G005990 vs. NCBI nr
Match: gi|659080490|ref|XP_008440820.1| (PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo])

HSP 1 Score: 325.5 bits (833), Expect = 6.2e-86
Identity = 161/191 (84.29%), Postives = 174/191 (91.10%), Query Frame = 1 

Query: 1   MNSVDDLGYSYRRLLKDS-LFEHPFGSRERIFTICATSVIAAVFVISLFITLFTCFRRQL 60
           MNSVDDLGYS RRLLKDS LFE PFG+RERI TICATS IAA+FVISLFI+LFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTSTNQ-LTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST ++Q LT MPVYIYGD SS+  SSYCF +SFESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCF-TSFESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHAFHKGCIDQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWARNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+HTI+EI T+RRP+CSNYWARNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSNVPLPSQL 190
           LGSN PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]
BLAST of Lsi01G005990 vs. NCBI nr
Match: gi|720049887|ref|XP_010271587.1| (PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera])

HSP 1 Score: 135.2 bits (339), Expect = 1.2e-28
Identity = 76/178 (42.70%), Postives = 100/178 (56.18%), Query Frame = 1 

Query: 24  FGSR-ERIFTICATSVIAAVFVISLFITLFTCFRRQLNSPSSKPPSSTST---------N 83
           +GS  ER   + ++S +  + ++ LF ++F C RR   S SS P SS S+         N
Sbjct: 12  YGSNLERTLIVLSSSFVVMMLIVFLFKSIFRCTRRC--SHSSHPQSSQSSISGTIQPYSN 71

Query: 84  QLTAMPVYIYGDLSSSPSSSYCFMSSFESRNCVICLAEFEHGDELRVLPNCKHAFHKGCI 143
            L A+P+ IYG   +SP S  C  + FES NC ICLAEFE+G  +RVLP CKH FHK CI
Sbjct: 72  DLDAIPISIYGASPTSPPSFSCSSTPFESENCAICLAEFEYGQTVRVLPRCKHIFHKDCI 131

Query: 144 DQWLPLKSLHCPLCRDHTIEEIGTVRRPVCSNYWAR--NPAFILAFGLGSNVPLPSQL 190
           DQWLP +S  CP+CRD  +E         C N   R  N + +L      +V LP+QL
Sbjct: 132 DQWLPARSSFCPVCRDQAVENDVNPPTTNCRNAGGRTGNGSALLVLHFTPSVHLPNQL 187

The following BLAST results are available for this feature:
BLAST of Lsi01G005990 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL47_ARATH6.0e-1238.30RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
ATL65_ARATH1.0e-1135.42RING-H2 finger protein ATL65 OS=Arabidopsis thaliana GN=ATL65 PE=2 SV=2[more]
ATL13_ARATH3.0e-1148.28RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2[more]
ATL48_ARATH1.1e-1040.74RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2[more]
ATL42_ARATH1.1e-1036.00E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2[more]
BLAST of Lsi01G005990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP7_CUCSA8.8e-8784.21Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1[more]
A0A0D2SGF6_GOSRA3.5e-1936.50Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1[more]
A5B1V6_VITVI1.0e-1838.04Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=... [more]
A0A061DFR3_THECC6.6e-1832.84Uncharacterized protein OS=Theobroma cacao GN=TCM_000202 PE=4 SV=1[more]
V4RVB6_9ROSI1.5e-1735.92Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1[more]
BLAST of Lsi01G005990 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G23980.13.4e-1338.30 RING/U-box superfamily protein[more]
AT3G18930.15.7e-1335.42 RING/U-box superfamily protein[more]
AT4G30400.11.7e-1248.28 RING/U-box superfamily protein[more]
AT4G33565.12.8e-1230.67 RING/U-box superfamily protein[more]
AT3G48030.16.3e-1240.74 hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin... [more]
BLAST of Lsi01G005990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722491|ref|XP_011658497.1|1.3e-8684.21PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
gi|700193713|gb|KGN48917.1|1.3e-8684.21hypothetical protein Csa_6G505940 [Cucumis sativus][more]
gi|659080492|ref|XP_008440821.1|6.2e-8684.29PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo][more]
gi|659080490|ref|XP_008440820.1|6.2e-8684.29PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo][more]
gi|720049887|ref|XP_010271587.1|1.2e-2842.70PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G005990.1Lsi01G005990.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 104..148
score: 8.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 105..147
score: 3.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 105..148
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 102..149
score: 3.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 30..148
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 104..158
score: 4.54

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G005990Csa6G505940Cucumber (Chinese Long) v2culsiB434
Lsi01G005990CSPI06G31810Wild cucumber (PI 183967)cpilsiB439
Lsi01G005990CmaCh03G006830Cucurbita maxima (Rimu)cmalsiB597
Lsi01G005990CmoCh03G007080Cucurbita moschata (Rifu)cmolsiB582
Lsi01G005990Cla014288Watermelon (97103) v1lsiwmB144
Lsi01G005990MELO3C007907Melon (DHL92) v3.5.1lsimeB156
Lsi01G005990MELO3C007907.2Melon (DHL92) v3.6.1lsimedB163
Lsi01G005990Cla97C01G019750Watermelon (97103) v2lsiwmbB115
Lsi01G005990Bhi03G000637Wax gourdlsiwgoB168
Lsi01G005990Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G005990Carg00590Silver-seed gourdcarlsiB364
Lsi01G005990CsaV3_6G047140Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G005990Bottle gourd (USVL1VR-Ls)lsilsiB031
Lsi01G005990Bottle gourd (USVL1VR-Ls)lsilsiB078
Lsi01G005990Bottle gourd (USVL1VR-Ls)lsilsiB085
Lsi01G005990Cucumber (Gy14) v1cgylsiB022
Lsi01G005990Cucumber (Gy14) v1cgylsiB547
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB013
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB163
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB407
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB565
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB720
Lsi01G005990Cucurbita maxima (Rimu)cmalsiB786
Lsi01G005990Cucurbita moschata (Rifu)cmolsiB001
Lsi01G005990Cucurbita moschata (Rifu)cmolsiB152
Lsi01G005990Cucurbita moschata (Rifu)cmolsiB393
Lsi01G005990Cucurbita moschata (Rifu)cmolsiB710
Lsi01G005990Cucurbita moschata (Rifu)cmolsiB774
Lsi01G005990Cucurbita pepo (Zucchini)cpelsiB237
Lsi01G005990Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G005990Wild cucumber (PI 183967)cpilsiB107
Lsi01G005990Wild cucumber (PI 183967)cpilsiB108
Lsi01G005990Wild cucumber (PI 183967)cpilsiB170
Lsi01G005990Cucumber (Chinese Long) v2culsiB109
Lsi01G005990Cucumber (Chinese Long) v2culsiB110
Lsi01G005990Cucumber (Chinese Long) v2culsiB171
Lsi01G005990Melon (DHL92) v3.5.1lsimeB124
Lsi01G005990Melon (DHL92) v3.5.1lsimeB132
Lsi01G005990Melon (DHL92) v3.5.1lsimeB142
Lsi01G005990Watermelon (Charleston Gray)lsiwcgB127
Lsi01G005990Watermelon (Charleston Gray)lsiwcgB151
Lsi01G005990Watermelon (97103) v1lsiwmB132
Lsi01G005990Watermelon (97103) v1lsiwmB140
Lsi01G005990Cucumber (Gy14) v2cgyblsiB098
Lsi01G005990Cucumber (Gy14) v2cgyblsiB100
Lsi01G005990Cucumber (Gy14) v2cgyblsiB398
Lsi01G005990Melon (DHL92) v3.6.1lsimedB131
Lsi01G005990Melon (DHL92) v3.6.1lsimedB140
Lsi01G005990Melon (DHL92) v3.6.1lsimedB148
Lsi01G005990Silver-seed gourdcarlsiB125
Lsi01G005990Silver-seed gourdcarlsiB585
Lsi01G005990Silver-seed gourdcarlsiB892
Lsi01G005990Cucumber (Chinese Long) v3cuclsiB119
Lsi01G005990Cucumber (Chinese Long) v3cuclsiB121
Lsi01G005990Cucumber (Chinese Long) v3cuclsiB187
Lsi01G005990Watermelon (97103) v2lsiwmbB128
Lsi01G005990Watermelon (97103) v2lsiwmbB144
Lsi01G005990Watermelon (97103) v2lsiwmbB149
Lsi01G005990Wax gourdlsiwgoB163