CmoCh03G007080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh03G007080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRING-H2 finger protein 2B
LocationCmo_Chr03 : 6139550 .. 6140110 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTTTCGGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

mRNA sequence

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTTTCGGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

Coding sequence (CDS)

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTTTCGGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA
Homology
[Close]
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-11
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 101 NCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKP 159
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      + ++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEI-------KGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match: ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCR--ELSIDEIGTMRKP 159
            WL    + CPLCR  +L  D+   M++P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 35/89 (39.33%), Postives = 48/89 (53.93%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWL 134
           + ++PV++YG+       + S  +  +C +CL EF   D+LR+LP C HAFH  CID WL
Sbjct: 186 IDALPVFLYGN------VTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL 245

Query: 135 PLRSLLCPLCRELSIDEIGTMRKPVCTNH 164
            L +  CPLCR             VC NH
Sbjct: 246 -LSNSTCPLCRR------SLSTSNVCYNH 261

[Close]
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match: ATL31_ORYSJ (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica GN=Os03g0188200 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 51/133 (38.35%), Postives = 62/133 (46.62%), Query Frame = 1 

Query: 32  TICVVSAIAAAFVLSLFISLFT--CF------RRQLTSASSKPP------SSTCSRQLS- 91
           T+ V+ A+  AFVL    S+    C       RR   S +S  P      +S  SR L  
Sbjct: 47  TVVVLVALITAFVLLTVFSVLINRCAQARAPPRRAFRSTASHQPVGGAAAASRASRGLDK 106

Query: 92  ----SMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQ 146
               + P  +YGD        S   E   C +CLAEF   DELRVLP C H FH  CID 
Sbjct: 107 EVVEAFPTAVYGDVKARMAAKSGPLE---CAVCLAEFADSDELRVLPACCHVFHPDCIDP 166

[Close]
BLAST of CmoCh03G007080 vs. TrEMBL
Match: A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 3.8e-74
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of CmoCh03G007080 vs. TrEMBL
Match: A5B1V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-15
Identity = 55/145 (37.93%), Postives = 77/145 (53.10%), Query Frame = 1 

Query: 12  RRLLKDSLLQRPFGHHERLVTICV-VSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSST 71
           RRLL+ S  +  +       TIC  V+    AFV   FI   T  R +     S+   ST
Sbjct: 9   RRLLESSSEESIY--RSLTTTICAFVAGFGMAFVFGAFIVSCTIRRLRGYGDESQHHGST 68

Query: 72  CSRQLSS----------MPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPN 131
            S   SS          +PV+IYG        +++S+E + C ICL E+E G+ + VLP 
Sbjct: 69  ASAASSSGQRRREHVVAIPVHIYGPGPSSSCAATTSYELQACAICLCEYENGERVSVLPR 128

Query: 132 CKHAFHKGCIDQWLPLRSLLCPLCR 146
           CKH FHK CI+QW+P++S+ CP+CR
Sbjct: 129 CKHMFHKDCIEQWVPVKSVNCPICR 151

[Close]
BLAST of CmoCh03G007080 vs. TrEMBL
Match: V4RVB6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.2e-14
Identity = 47/128 (36.72%), Postives = 75/128 (58.59%), Query Frame = 1 

Query: 32  TICVVSAIAAAFVLSLFI---SLFTCFRRQLTSASSKPPSSTCSR----QLSSMPVYIYG 91
           T+ ++ AI     L  F+   +++ CF R   S   +     C R    +L+++PV+ YG
Sbjct: 18  TLSIIIAIIIVVCLICFLLIKTVYRCFNRSNQSPHGQQECQDCHRHREDKLAAIPVFAYG 77

Query: 92  DSAPYCFTSSSS-FEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPL 151
           D A    T+SS+ F  + C ICL ++   D +R+LP C H FHK CID+WL ++SL CP+
Sbjct: 78  DVATGLPTNSSTTFANKVCAICLDDYADTDVVRILPRCLHVFHKECIDKWLCVKSLQCPI 137

[Close]
BLAST of CmoCh03G007080 vs. TrEMBL
Match: A0A061DFR3_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_000202 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 45/148 (30.41%), Postives = 72/148 (48.65%), Query Frame = 1 

Query: 10  TYRRLLKDSLLQRPFGH------HERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSAS 69
           +++ LL+D       GH      + R+V   + + I+   ++ L    F    R     +
Sbjct: 10  SHKHLLRDYTPSPSNGHCRTVVVNHRIVVTTMAATISLCLIVLLICKCFHLSNRSRNPTN 69

Query: 70  SKPPSSTCSRQLSSMPVYIYGDSA-----PYCFTSSSSFEARNCVICLAEFELGDELRVL 129
             P + +   +L+S+P  +Y +S      P C    S     +C ICL  +  GD + VL
Sbjct: 70  VNPRAPSIDDELASIPALVYAESTLWSSQPSCSDDDSLELEEHCAICLEGYVHGDSVSVL 129

Query: 130 PNCKHAFHKGCIDQWLPLRSLLCPLCRE 147
           P CKH FHK CI++WL + SL CP+CR+
Sbjct: 130 PRCKHMFHKKCIEEWLQVPSLHCPICRD 157

[Close]
BLAST of CmoCh03G007080 vs. TrEMBL
Match: A0A0D2SGF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 2.8e-13
Identity = 47/144 (32.64%), Postives = 76/144 (52.78%), Query Frame = 1 

Query: 28  ERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSK---PPSSTCSRQLSSMPVYIYG 87
           +R+ +  +V+ I+   +   F  ++ C  R    +S +    P  +   +L  +PV +YG
Sbjct: 33  DRIWSTVMVAVISLGII---FFLIYKCIFRSPNHSSDENKTEPKPSVDSELDQIPVLVYG 92

Query: 88  DSA-----PYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSL 147
           +S      P C  + S  E   C ICL E+  G+ +RVLP CKH FHK CI++WL + SL
Sbjct: 93  ESMMPSSEPSCSDTISELET--CAICLEEYVHGERVRVLPRCKHMFHKDCIEEWLEVPSL 152

Query: 148 LCPLCRELSIDE-IGTMRKPVCTN 163
            CP+CR+  ++  + + R   C N
Sbjct: 153 HCPICRDKVLEHCLQSARSNNCRN 171

[Close]
BLAST of CmoCh03G007080 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 1 

Query: 101 NCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKP 159
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of CmoCh03G007080 vs. TAIR10
Match: AT1G23980.1 (AT1G23980.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 35/91 (38.46%), Postives = 49/91 (53.85%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      + ++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEI-------KGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of CmoCh03G007080 vs. TAIR10
Match: AT2G27940.1 (AT2G27940.1 RING/U-box superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 4.8e-12
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCR--ELSIDEIGTMRKP 159
            WL    + CPLCR  +L  D+   M++P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of CmoCh03G007080 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-12
Identity = 35/89 (39.33%), Postives = 48/89 (53.93%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWL 134
           + ++PV++YG+       + S  +  +C +CL EF   D+LR+LP C HAFH  CID WL
Sbjct: 186 IDALPVFLYGN------VTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL 245

Query: 135 PLRSLLCPLCRELSIDEIGTMRKPVCTNH 164
            L +  CPLCR             VC NH
Sbjct: 246 -LSNSTCPLCRR------SLSTSNVCYNH 261

[Close]
BLAST of CmoCh03G007080 vs. TAIR10
Match: AT3G18930.1 (AT3G18930.1 RING/U-box superfamily protein)

HSP 1 Score: 68.2 bits (165), Expect = 6.2e-12
Identity = 47/153 (30.72%), Postives = 70/153 (45.75%), Query Frame = 1 

Query: 10  TYRRLLKDSLLQRPFGHHERLVT----ICVVSAIAAAFVLSLFISLFTCFRRQLTSASSK 69
           TY RL+    L   F    R       +  +S+ ++A   S  +  F+ F       SS 
Sbjct: 57  TYSRLISRRFLSPLFRRFRRWRCRRRRLLHLSSASSASTSSSDLRSFSPFPFDSFHYSSY 116

Query: 70  PPSSTCSRQLSSMPVYIYGDSA---PYCFTSSSSFEARNCVICLAEFELGDELRVLPNCK 129
            P       + ++P+++Y  +A         +S+   R+C +CL EFE GD +R LP C 
Sbjct: 117 SPYGLDDSVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCF 176

Query: 130 HAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTM 156
           HAFH  CID+WL      CPLCR   +   G +
Sbjct: 177 HAFHLECIDEWLRSHP-NCPLCRTAILGSAGVL 208

[Close]
BLAST of CmoCh03G007080 vs. NCBI nr
Match: gi|778722491|ref|XP_011658497.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 5.4e-74
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 120

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 121 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 180

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 181 GLGSNAPLPSQL 189

[Close]
BLAST of CmoCh03G007080 vs. NCBI nr
Match: gi|700193713|gb|KGN48917.1| (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 285.8 bits (730), Expect = 5.4e-74
Identity = 143/192 (74.48%), Postives = 159/192 (82.81%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of CmoCh03G007080 vs. NCBI nr
Match: gi|659080492|ref|XP_008440821.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 2.7e-73
Identity = 144/193 (74.61%), Postives = 160/193 (82.90%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDS-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKDS L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+RNCVICLAEFE GD
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRNCVICLAEFEYGD 120

Query: 121 ELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLA 180
           ELRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+P+C+N+WARNPAF+LA
Sbjct: 121 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 180

Query: 181 FAPASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 181 FGLGSNAPLPSQL 190

[Close]
BLAST of CmoCh03G007080 vs. NCBI nr
Match: gi|659080490|ref|XP_008440820.1| (PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo])

HSP 1 Score: 283.5 bits (724), Expect = 2.7e-73
Identity = 144/193 (74.61%), Postives = 160/193 (82.90%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDS-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKDS L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+RNCVICLAEFE GD
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRNCVICLAEFEYGD 130

Query: 121 ELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLA 180
           ELRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+P+C+N+WARNPAF+LA
Sbjct: 131 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 190

Query: 181 FAPASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 191 FGLGSNAPLPSQL 200

[Close]
BLAST of CmoCh03G007080 vs. NCBI nr
Match: gi|720049887|ref|XP_010271587.1| (PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera])

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-23
Identity = 73/175 (41.71%), Postives = 96/175 (54.86%), Query Frame = 1 

Query: 28  ERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCS---------RQLSSM 87
           ER + +   S +    ++ LF S+F C RR   S SS P SS  S           L ++
Sbjct: 17  ERTLIVLSSSFVVMMLIVFLFKSIFRCTRR--CSHSSHPQSSQSSISGTIQPYSNDLDAI 76

Query: 88  PVYIYGDS--APYCFTSSSS-FEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLP 147
           P+ IYG S  +P  F+ SS+ FE+ NC ICLAEFE G  +RVLP CKH FHK CIDQWLP
Sbjct: 77  PISIYGASPTSPPSFSCSSTPFESENCAICLAEFEYGQTVRVLPRCKHIFHKDCIDQWLP 136

Query: 148 LRSLLCPLCRELSIDEIGTMRKPVCTNHWAR----NPAFVLAFAPASNAPLPSQL 187
            RS  CP+CR+ +++         C N   R    +   VL F P+ +  LP+QL
Sbjct: 137 ARSSFCPVCRDQAVENDVNPPTTNCRNAGGRTGNGSALLVLHFTPSVH--LPNQL 187

The following BLAST results are available for this feature:
BLAST of CmoCh03G007080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL13_ARATH2.9e-1148.28RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2[more]
ATL47_ARATH6.5e-1138.46RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
ATL57_ARATH8.5e-1138.20RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1[more]
ATL48_ARATH1.1e-1039.33RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2[more]
ATL31_ORYSJ1.1e-1038.35E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica GN=Os03... [more]
BLAST of CmoCh03G007080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP7_CUCSA3.8e-7474.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1[more]
A5B1V6_VITVI1.0e-1537.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=... [more]
V4RVB6_9ROSI1.2e-1436.72Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1[more]
A0A061DFR3_THECC2.8e-1330.41Uncharacterized protein OS=Theobroma cacao GN=TCM_000202 PE=4 SV=1[more]
A0A0D2SGF6_GOSRA2.8e-1332.64Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1[more]
BLAST of CmoCh03G007080 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30400.11.6e-1248.28 RING/U-box superfamily protein[more]
AT1G23980.13.7e-1238.46 RING/U-box superfamily protein[more]
AT2G27940.14.8e-1238.20 RING/U-box superfamily protein[more]
AT3G48030.16.2e-1239.33 hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin... [more]
AT3G18930.16.2e-1230.72 RING/U-box superfamily protein[more]
BLAST of CmoCh03G007080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722491|ref|XP_011658497.1|5.4e-7474.48PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
gi|700193713|gb|KGN48917.1|5.4e-7474.48hypothetical protein Csa_6G505940 [Cucumis sativus][more]
gi|659080492|ref|XP_008440821.1|2.7e-7374.61PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo][more]
gi|659080490|ref|XP_008440820.1|2.7e-7374.61PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo][more]
gi|720049887|ref|XP_010271587.1|7.4e-2341.71PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh03G007080.1CmoCh03G007080.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..145
score: 4.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 102..144
score: 1.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 102..145
score: 11
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 100..146
score: 1.8
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 30..145
score: 8.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 95..154
score: 4.62

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh03G007080CmaCh03G006830Cucurbita maxima (Rimu)cmacmoB653
CmoCh03G007080Cla014288Watermelon (97103) v1cmowmB623
CmoCh03G007080Csa6G505940Cucumber (Chinese Long) v2cmocuB670
CmoCh03G007080MELO3C007907Melon (DHL92) v3.5.1cmomeB605
CmoCh03G007080CSPI06G31810Wild cucumber (PI 183967)cmocpiB681
CmoCh03G007080Lsi01G005990Bottle gourd (USVL1VR-Ls)cmolsiB582
CmoCh03G007080Cp4.1LG10g00230Cucurbita pepo (Zucchini)cmocpeB606
CmoCh03G007080MELO3C007907.2Melon (DHL92) v3.6.1cmomedB694
CmoCh03G007080CsaV3_6G047140Cucumber (Chinese Long) v3cmocucB0793
CmoCh03G007080Cla97C01G019750Watermelon (97103) v2cmowmbB642
CmoCh03G007080Bhi03G000637Wax gourdcmowgoB0781
CmoCh03G007080Carg00590Silver-seed gourdcarcmoB0551
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh03G007080Melon (DHL92) v3.6.1cmomedB662
CmoCh03G007080Melon (DHL92) v3.6.1cmomedB671
CmoCh03G007080Silver-seed gourdcarcmoB0886
CmoCh03G007080Silver-seed gourdcarcmoB1317
CmoCh03G007080Cucumber (Chinese Long) v3cmocucB0766
CmoCh03G007080Cucumber (Chinese Long) v3cmocucB0767
CmoCh03G007080Cucumber (Chinese Long) v3cmocucB0773
CmoCh03G007080Watermelon (97103) v2cmowmbB673
CmoCh03G007080Cucurbita moschata (Rifu)cmocmoB455
CmoCh03G007080Cucumber (Gy14) v1cgycmoB0042
CmoCh03G007080Cucurbita maxima (Rimu)cmacmoB858
CmoCh03G007080Wild cucumber (PI 183967)cmocpiB655
CmoCh03G007080Wild cucumber (PI 183967)cmocpiB656
CmoCh03G007080Cucumber (Chinese Long) v2cmocuB643
CmoCh03G007080Cucumber (Chinese Long) v2cmocuB644
CmoCh03G007080Melon (DHL92) v3.5.1cmomeB578
CmoCh03G007080Melon (DHL92) v3.5.1cmomeB584
CmoCh03G007080Watermelon (Charleston Gray)cmowcgB575
CmoCh03G007080Watermelon (Charleston Gray)cmowcgB601
CmoCh03G007080Watermelon (97103) v1cmowmB610
CmoCh03G007080Cucurbita pepo (Zucchini)cmocpeB624
CmoCh03G007080Bottle gourd (USVL1VR-Ls)cmolsiB580
CmoCh03G007080Bottle gourd (USVL1VR-Ls)cmolsiB608
CmoCh03G007080Cucumber (Gy14) v2cgybcmoB230
CmoCh03G007080Cucumber (Gy14) v2cgybcmoB385
CmoCh03G007080Cucumber (Gy14) v2cgybcmoB811