Carg00590 (gene) Silver-seed gourd

Overview
NameCarg00590
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionRING-H2 finger protein ATL72-like
LocationCucurbita_argyrosperma_scaffold_014 : 460973 .. 461533 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCAGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAATAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCCTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTTTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCTCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

mRNA sequence

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCAGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAATAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCCTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTTTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCTCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

Coding sequence (CDS)

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCAGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAATAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCCTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTTTGCCCAACTGTAAGCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCGCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGAGATTGGGACCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCTCTGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

Protein sequence

MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFASASNAPLPSQL
Homology
[Close]
BLAST of Carg00590 vs. NCBI nr
Match: XP_022950353.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 2.4e-102
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPN 120
           SASSKPPSSTCSRQL+SMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPN
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPN 120

Query: 121 CKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFASASNA 180
           CKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA ASNA
Sbjct: 121 CKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFAPASNA 180

Query: 181 PLPSQL 187
           PLPSQL
Sbjct: 181 PLPSQL 186

[Close]
BLAST of Carg00590 vs. NCBI nr
Match: XP_022977281.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 365.5 bits (937), Expect = 1.0e-97
Identity = 178/186 (95.70%), Postives = 180/186 (96.77%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPN 120
           SASSKPPSSTCSRQL+SMPVYIYGDSAPYCFT SSSFE RNCVICL EFELGDELRVLPN
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGDSAPYCFT-SSSFEVRNCVICLGEFELGDELRVLPN 120

Query: 121 CKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFASASNA 180
           C HAFHKGCIDQWLPLRSLLCPLCRELS DEIGTMRKPVCTN+WARNPAFVLAFA ASNA
Sbjct: 121 CNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFAPASNA 180

Query: 181 PLPSQL 187
           PLPSQL
Sbjct: 181 PLPSQL 185

[Close]
BLAST of Carg00590 vs. NCBI nr
Match: KGN48917.1 (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 143/192 (74.48%), Postives = 158/192 (82.29%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQ-LNSMPVYIYGDS-----APYCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS Q L +MPVYIYGDS     + YCFT   SFE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT---SFESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 ASASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of Carg00590 vs. NCBI nr
Match: XP_011658497.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 6.2e-74
Identity = 143/192 (74.48%), Postives = 158/192 (82.29%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SASSKPPSSTCSRQ-LNSMPVYIYGDS-----APYCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS Q L +MPVYIYGDS     + YCFT   SFE+R CVICLAEFE GDE
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT---SFESRTCVICLAEFEYGDE 120

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 121 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 180

Query: 181 ASASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 181 GLGSNAPLPSQL 189

[Close]
BLAST of Carg00590 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo])

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 144/193 (74.61%), Postives = 159/193 (82.38%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKD-SLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKD SL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  TSASSKPPSSTCSRQ-LNSMPVYIYGDS-----APYCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS Q L +MPVYIYGDS     + YCFT   SFE+RNCVICLAEFE GD
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT---SFESRNCVICLAEFEYGD 130

Query: 121 ELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLA 180
           ELRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+P+C+N+WARNPAF+LA
Sbjct: 131 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 190

Query: 181 FASASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 191 FGLGSNAPLPSQL 200

[Close]
BLAST of Carg00590 vs. TAIR10
Match: AT4G30400.1 (RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 101 NCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVC 160
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P  
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP-- 192

Query: 161 TNHWARNPAFVLAFASASN 180
                   +F+L   SAS+
Sbjct: 193 ------RSSFLLVLESASD 202

[Close]
BLAST of Carg00590 vs. TAIR10
Match: AT1G20823.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-13
Identity = 37/92 (40.22%), Postives = 48/92 (52.17%), Query Frame = 0 

Query: 63  SSKPPSSTCS-----RQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRV 122
           S +PP +  +     + L S+P   +   +P       S +   C ICLAEF  GDELRV
Sbjct: 73  SPQPPVAAANKGLKKKVLQSLPKLTFSPESP------ESEKFAECAICLAEFSAGDELRV 132

Query: 123 LPNCKHAFHKGCIDQWLPLRSLLCPLCRELSI 150
           LP C H FH  CID WL   S  CP CR++ +
Sbjct: 133 LPQCGHGFHVACIDTWLGSHS-SCPSCRQILV 157

[Close]
BLAST of Carg00590 vs. TAIR10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4)

HSP 1 Score: 70.5 bits (171), Expect = 1.3e-12
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 0 

Query: 67  PSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFH 126
           P +  S  L+S+P++ +          SSS  + +C +CL++FE  D+LR+LP C HAFH
Sbjct: 86  PETERSSVLDSLPIFKFSSVT----RRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFH 145

Query: 127 KGCIDQWLPLRSLLCPLCRE-LSIDEIGTMRK--PVCTNHWARNPAFVLAFASAS---NA 186
             CID WL + +  CPLCR  L   E   M+    V +N+     +F L   S S     
Sbjct: 146 ADCIDIWL-VSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQT 205

[Close]
BLAST of Carg00590 vs. TAIR10
Match: AT1G23980.1 (RING/U-box superfamily protein)

HSP 1 Score: 70.1 bits (170), Expect = 1.6e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 55  FRRQLTSASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      ++++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKE-------IKGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Carg00590 vs. TAIR10
Match: AT2G27940.1 (RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0 

Query: 72  SRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCR--ELSIDEIGTMRKP 159
            WL    + CPLCR  +L  D+   M++P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of Carg00590 vs. Swiss-Prot
Match: sp|Q940Q4|ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 33/79 (41.77%), Postives = 45/79 (56.96%), Query Frame = 0 

Query: 101 NCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVC 160
           +C +CL EFE  D+LR+LP C HAFH  CID WL L    CPLCR   + ++ + + P  
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP-- 192

Query: 161 TNHWARNPAFVLAFASASN 180
                   +F+L   SAS+
Sbjct: 193 ------RSSFLLVLESASD 202

[Close]
BLAST of Carg00590 vs. Swiss-Prot
Match: sp|Q9LM69|ATL80_ARATH (RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 37/92 (40.22%), Postives = 48/92 (52.17%), Query Frame = 0 

Query: 63  SSKPPSSTCS-----RQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRV 122
           S +PP +  +     + L S+P   +   +P       S +   C ICLAEF  GDELRV
Sbjct: 73  SPQPPVAAANKGLKKKVLQSLPKLTFSPESP------ESEKFAECAICLAEFSAGDELRV 132

Query: 123 LPNCKHAFHKGCIDQWLPLRSLLCPLCRELSI 150
           LP C H FH  CID WL   S  CP CR++ +
Sbjct: 133 LPQCGHGFHVACIDTWLGSHS-SCPSCRQILV 157

[Close]
BLAST of Carg00590 vs. Swiss-Prot
Match: sp|Q9LY41|ATL4_ARATH (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.3e-11
Identity = 44/126 (34.92%), Postives = 65/126 (51.59%), Query Frame = 0 

Query: 67  PSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFH 126
           P +  S  L+S+P++ +          SSS  + +C +CL++FE  D+LR+LP C HAFH
Sbjct: 86  PETERSSVLDSLPIFKFSSVT----RRSSSMNSGDCAVCLSKFEPEDQLRLLPLCCHAFH 145

Query: 127 KGCIDQWLPLRSLLCPLCRE-LSIDEIGTMRK--PVCTNHWARNPAFVLAFASAS---NA 186
             CID WL + +  CPLCR  L   E   M+    V +N+     +F L   S S     
Sbjct: 146 ADCIDIWL-VSNQTCPLCRSPLFASESDLMKSLAVVGSNNGGGENSFRLEIGSISRRRQT 205

[Close]
BLAST of Carg00590 vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.0e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 0 

Query: 55  FRRQLTSASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      ++++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKE-------IKGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Carg00590 vs. Swiss-Prot
Match: sp|Q9SJJ7|ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 34/89 (38.20%), Postives = 53/89 (59.55%), Query Frame = 0 

Query: 72  SRQLNSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCR--ELSIDEIGTMRKP 159
            WL    + CPLCR  +L  D+   M++P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of Carg00590 vs. TrEMBL
Match: tr|A0A0A0KKP7|A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 4.1e-74
Identity = 143/192 (74.48%), Postives = 158/192 (82.29%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQ-LNSMPVYIYGDS-----APYCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS Q L +MPVYIYGDS     + YCFT   SFE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT---SFESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAF 180
           LRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 ASASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of Carg00590 vs. TrEMBL
Match: tr|A0A1S3B2S4|A0A1S3B2S4_CUCME (RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.0e-73
Identity = 144/193 (74.61%), Postives = 159/193 (82.38%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRLLKD-SLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKD SL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  TSASSKPPSSTCSRQ-LNSMPVYIYGDS-----APYCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS Q L +MPVYIYGDS     + YCFT   SFE+RNCVICLAEFE GD
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFT---SFESRNCVICLAEFEYGD 130

Query: 121 ELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLA 180
           ELRVLPNCKH FHKGCIDQWLPLRSLLCPLCRE +I EI TMR+P+C+N+WARNPAF+LA
Sbjct: 131 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 190

Query: 181 FASASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 191 FGLGSNAPLPSQL 200

[Close]
BLAST of Carg00590 vs. TrEMBL
Match: tr|A0A2N9ICV8|A0A2N9ICV8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49792 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 1.4e-18
Identity = 59/123 (47.97%), Postives = 76/123 (61.79%), Query Frame = 0 

Query: 69  STCSRQLNSMPVYIYGD--SAPYCFTSSSSFEAR-NCVICLAEFELGDELRVLPNCKHAF 128
           S+ S +L ++P +IY D  SA     ++SS E   NC ICL EF  G+ELRVLP CKH +
Sbjct: 2   SSQSDELAALPKFIYDDSCSASCSSATTSSLEPETNCPICLVEFLRGEELRVLPRCKHIY 61

Query: 129 HKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWA--RNPAFVLAFASASNAPLP 187
           HK CIDQWL LRSL CP+CR+ +I+     +K  CTN  A   +P+  LA   A N P+ 
Sbjct: 62  HKECIDQWLVLRSLHCPICRDRTIERDVEPKKSNCTNSGAGLGDPSMSLALGFA-NHPVI 121

[Close]
BLAST of Carg00590 vs. TrEMBL
Match: tr|A0A2I4FDB8|A0A2I4FDB8_9ROSI (RING-H2 finger protein ATL79-like OS=Juglans regia OX=51240 GN=LOC108997721 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 3.0e-16
Identity = 59/173 (34.10%), Postives = 89/173 (51.45%), Query Frame = 0 

Query: 1   MNSAQAPGYTYRRL--LKDSLL--QRPFGHHERLVTICVVSAIAAAFVLSLFISL-FTCF 60
           MN +  P ++ + L  +K S L  Q      ER +++ +   + A  + +L + L FTCF
Sbjct: 1   MNPSSTPQHSRKLLNVMKGSALAPQPHVRPPERTISVVITIIVMAMLICTLVVHLIFTCF 60

Query: 61  RR--QLTSASSKPPSSTCSRQLNSMPVYIYGDSAPYCFTSSSSFEARN----CVICLAEF 120
           RR                   L ++P +IY + +     SSS   + +    C ICLAEF
Sbjct: 61  RRXXXXXXXXXXXXXXXXXXDLAALPTFIYAEDSVSATCSSSIASSSDSEPICAICLAEF 120

Query: 121 ELGDELRVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTN 163
             G+ LRVLP C H +HK CIDQWL + SL CP+CR+ +ID+    ++  CT+
Sbjct: 121 VHGEILRVLPRCNHLYHKECIDQWLVVGSLSCPICRDRTIDQDVEPKRSRCTH 173

[Close]
BLAST of Carg00590 vs. TrEMBL
Match: tr|A5B1V6|A5B1V6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g03460 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.6e-14
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0 

Query: 79  PVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCKHAFHKGCIDQWLPLRS 138
           PV+IYG        +++S+E + C ICL E+E G+ + VLP CKH FHK CI+QW+P++S
Sbjct: 85  PVHIYGPXXXXXXAATTSYELQACAICLCEYENGERVSVLPRCKHMFHKDCIEQWVPVKS 144

Query: 139 LLCPLCR 146
           + CP+CR
Sbjct: 145 VNCPICR 151

The following BLAST results are available for this feature:
BLAST of Carg00590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022950353.12.4e-10298.92RING-H2 finger protein ATL74-like [Cucurbita moschata][more]
XP_022977281.11.0e-9795.70RING-H2 finger protein ATL74-like [Cucurbita maxima][more]
KGN48917.16.2e-7474.48hypothetical protein Csa_6G505940 [Cucumis sativus][more]
XP_011658497.16.2e-7474.48PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
XP_008440820.13.1e-7374.61PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo][more]
BLAST of Carg00590 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30400.15.6e-1341.77RING/U-box superfamily protein[more]
AT1G20823.19.6e-1340.22RING/U-box superfamily protein[more]
AT3G60220.11.3e-1234.92TOXICOS EN LEVADURA 4[more]
AT1G23980.11.6e-1238.46RING/U-box superfamily protein[more]
AT2G27940.12.1e-1238.20RING/U-box superfamily protein[more]
BLAST of Carg00590 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q940Q4|ATL13_ARATH1.0e-1141.77RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2[more]
sp|Q9LM69|ATL80_ARATH1.7e-1140.22RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1[more]
sp|Q9LY41|ATL4_ARATH2.3e-1134.92E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV... [more]
sp|Q8GW38|ATL47_ARATH3.0e-1138.46RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1[more]
sp|Q9SJJ7|ATL57_ARATH3.9e-1138.20RING-H2 finger protein ATL57 OS=Arabidopsis thaliana OX=3702 GN=ATL57 PE=2 SV=1[more]
BLAST of Carg00590 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KKP7|A0A0A0KKP7_CUCSA4.1e-7474.48Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1[more]
tr|A0A1S3B2S4|A0A1S3B2S4_CUCME2.0e-7374.61RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 S... [more]
tr|A0A2N9ICV8|A0A2N9ICV8_FAGSY1.4e-1847.97Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49792 PE=4 SV=1[more]
tr|A0A2I4FDB8|A0A2I4FDB8_9ROSI3.0e-1634.10RING-H2 finger protein ATL79-like OS=Juglans regia OX=51240 GN=LOC108997721 PE=4... [more]
tr|A5B1V6|A5B1V6_VITVI3.6e-1449.25Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_04s0023g03460 PE=4 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg00590-RACarg00590-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 102..144
e-value: 1.3E-7
score: 41.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..145
e-value: 9.5E-13
score: 48.2
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 102..145
score: 11.943
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 97..147
e-value: 3.4E-17
score: 63.8
NoneNo IPR availablePANTHERPTHR22765RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAININGcoord: 23..165
NoneNo IPR availableCDDcd16486mRING-H2-C3H2C2D_ZSWM2coord: 101..145
e-value: 6.37415E-16
score: 67.6369
NoneNo IPR availableSUPERFAMILYSSF57850RING/U-boxcoord: 101..154

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg00590Cla014288Watermelon (97103) v1carwmB0407
Carg00590Csa6G505940Cucumber (Chinese Long) v2carcuB0441
Carg00590MELO3C007907Melon (DHL92) v3.5.1carmeB0414
Carg00590CSPI06G31810Wild cucumber (PI 183967)carcpiB0446
Carg00590CmaCh03G006830Cucurbita maxima (Rimu)carcmaB0567
Carg00590CmoCh03G007080Cucurbita moschata (Rifu)carcmoB0551
Carg00590Lsi01G005990Bottle gourd (USVL1VR-Ls)carlsiB364
Carg00590Cp4.1LG10g00230Cucurbita pepo (Zucchini)carcpeB0554
Carg00590MELO3C007907.2Melon (DHL92) v3.6.1carmedB0418
Carg00590CsaV3_6G047140Cucumber (Chinese Long) v3carcucB0442
Carg00590Cla97C01G019750Watermelon (97103) v2carwmbB0426
Carg00590Bhi03G000637Wax gourdcarwgoB0488
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg00590Silver-seed gourdcarcarB425
Carg00590Silver-seed gourdcarcarB430
Carg00590Cucumber (Gy14) v2carcgybB0412
Carg00590Cucumber (Gy14) v2carcgybB0418
Carg00590Cucumber (Gy14) v1carcgyB0466
Carg00590Cucurbita maxima (Rimu)carcmaB0571
Carg00590Cucurbita moschata (Rifu)carcmoB0543
Carg00590Cucurbita moschata (Rifu)carcmoB0554
Carg00590Cucurbita pepo (Zucchini)carcpeB0563
Carg00590Cucurbita pepo (Zucchini)carcpeB0572
Carg00590Wild cucumber (PI 183967)carcpiB0439
Carg00590Wild cucumber (PI 183967)carcpiB0440
Carg00590Cucumber (Chinese Long) v2carcuB0434
Carg00590Cucumber (Chinese Long) v2carcuB0435
Carg00590Cucumber (Chinese Long) v3carcucB0436
Carg00590Cucumber (Chinese Long) v3carcucB0437
Carg00590Bottle gourd (USVL1VR-Ls)carlsiB363
Carg00590Bottle gourd (USVL1VR-Ls)carlsiB371
Carg00590Melon (DHL92) v3.5.1carmeB0402
Carg00590Melon (DHL92) v3.5.1carmeB0404
Carg00590Melon (DHL92) v3.6.1carmedB0407
Carg00590Melon (DHL92) v3.6.1carmedB0408
Carg00590Watermelon (Charleston Gray)carwcgB0397
Carg00590Watermelon (Charleston Gray)carwcgB0401
Carg00590Watermelon (97103) v2carwmbB0432