Cla97C01G019750 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G019750
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	RING-H2 finger protein 2B
Location	Cla97Chr01 : 32657681 .. 32658247 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGTACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

mRNA sequence

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGTACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

Coding sequence (CDS)

ATGAATTCGGTAGACGATCTCAGTTACAGTTACAGACGTCTTCTTAAAGATTCCTTATTCGAGCATCCATTTGGAAGCCAAGAAAGAATTTTTAACATATGTGTGACTTCTGCCATTGCAGCCGTGTTTGTAATCTCTTTGTTCGTCTCCCTCTTCACCTGCGTTCGGCGTCAACTGAACTCTCCTTCCTCTAAACCTCCCTCATCCACATTTAGCAGCCAACTCACTACCATGCCTGTATATATCTATGGCGATTTGTCTTCAAGTTCGTCGTCATCTTATGGTTTTACGTCATTGTTTGAGTCGAGGAACTGTGTCATATGTTTGGCGGAGTTTGAGCATGGAGATGAGCTTCGTGTTCTGCCTAACTGCAAGCATGTGTTTCATAAAGGCTGCATTGATCAGTGGCTTCCGTTGAAGTCGTTGCATTGCCCGCTTTGCCGAGACCCTACAATAGAGGAGATTGGTACCATCAGACCTGTTTGTTCGAATTATTGGACCCGAAATCCAGCCTTCATATTGGCCTTTGGCCTTGGTAGTAGTGTCCCATTGCCCTCTCAACTGTAA

Protein sequence

MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPVCSNYWTRNPAFILAFGLGSSVPLPSQL

Homology

[Close]

BLAST of Cla97C01G019750 vs. NCBI nr
Match: KGN48917.1 (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 9.0e-81
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVDDL YS RRLLKDSLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELR 120
           SPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGL 180
           VLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSSVPLPSQL 189
           GS+ PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]

BLAST of Cla97C01G019750 vs. NCBI nr
Match: XP_011658497.1 (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 9.0e-81
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVDDL YS RRLLKDSLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQLN
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELR 120
           SPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESR CVICLAEFE+GDELR
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRTCVICLAEFEYGDELR 120

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGL 180
           VLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RPVCSNYW+RNPAFILAFGL
Sbjct: 121 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 180

Query: 181 GSSVPLPSQL 189
           GS+ PLPSQL
Sbjct: 181 GSNAPLPSQL 189

[Close]

BLAST of Cla97C01G019750 vs. NCBI nr
Match: XP_008440820.1 (PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo])

HSP 1 Score: 305.4 bits (781), Expect = 1.3e-79
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of Cla97C01G019750 vs. NCBI nr
Match: XP_022950353.1 (RING-H2 finger protein ATL74-like [Cucurbita moschata])

HSP 1 Score: 271.2 bits (692), Expect = 2.7e-69
Identity = 135/191 (70.68%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNS     Y+YRRLLKDSL + PFG  ER+  ICV SAIAA FV+SLF+SLFTC RRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFT--SLFESRNCVICLAEFEHGDEL 120
           S SSKPPSST S QL++MPVYIYGD     S+ Y FT  S FE+RNCVICLAEFE GDEL
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSSFEARNCVICLAEFELGDEL 120

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIR-PVCSNYWTRNPAFILAFG 180
           RVLPNCKH FHKGCIDQWLPL+SL CPLCR+ +I+EIGT+R PVC+N+W RNPAF+LAF 
Sbjct: 121 RVLPNCKHAFHKGCIDQWLPLRSLLCPLCRELSIDEIGTMRKPVCTNHWARNPAFVLAFA 180

Query: 181 LGSSVPLPSQL 189
             S+ PLPSQL
Sbjct: 181 PASNAPLPSQL 186

[Close]

BLAST of Cla97C01G019750 vs. NCBI nr
Match: XP_022977281.1 (RING-H2 finger protein ATL74-like [Cucurbita maxima])

HSP 1 Score: 266.9 bits (681), Expect = 5.1e-68
Identity = 133/190 (70.00%), Postives = 149/190 (78.42%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNS     Y+YRRLLKDSL + PFG  ER+  ICV SAIAA FV+SLF+SLFTC RRQL 
Sbjct: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60

Query: 61  SPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFT-SLFESRNCVICLAEFEHGDELR 120
           S SSKPPSST S QL++MPVYIYGD     S+ Y FT S FE RNCVICL EFE GDELR
Sbjct: 61  SASSKPPSSTCSRQLSSMPVYIYGD-----SAPYCFTSSSFEVRNCVICLGEFELGDELR 120

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIR-PVCSNYWTRNPAFILAFGL 180
           VLPNC H FHKGCIDQWLPL+SL CPLCR+ + +EIGT+R PVC+NYW RNPAF+LAF  
Sbjct: 121 VLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFAP 180

Query: 181 GSSVPLPSQL 189
            S+ PLPSQL
Sbjct: 181 ASNAPLPSQL 185

[Close]

BLAST of Cla97C01G019750 vs. TrEMBL
Match: tr|A0A0A0KKP7|A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 5.9e-81
Identity = 157/190 (82.63%), Postives = 169/190 (88.95%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQLN 60
           MNSVDDL YS RRLLKDSLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQLN
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELR 120
           SPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESR CVICLAEFE+GDELR
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRTCVICLAEFEYGDELR 143

Query: 121 VLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFGL 180
           VLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RPVCSNYW+RNPAFILAFGL
Sbjct: 144 VLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFGL 203

Query: 181 GSSVPLPSQL 189
           GS+ PLPSQL
Sbjct: 204 GSNAPLPSQL 212

[Close]

BLAST of Cla97C01G019750 vs. TrEMBL
Match: tr|A0A1S3B2S4|A0A1S3B2S4_CUCME (RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 SV=1)

HSP 1 Score: 305.4 bits (781), Expect = 8.6e-80
Identity = 157/191 (82.20%), Postives = 169/191 (88.48%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKD-SLFEHPFGSQERIFNICVTSAIAAVFVISLFVSLFTCVRRQL 60
           MNSVDDL YS RRLLKD SLFE PFG++ERI  IC TSAIAA+FVISLF+SLFTC RRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  NSPSSKPPSSTFSSQ-LTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDEL 120
           NSPSSKP SST SSQ LTTMPVYIYGD SS+  SSY FTS FESRNCVICLAEFE+GDEL
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS-FESRNCVICLAEFEYGDEL 130

Query: 121 RVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTI-RPVCSNYWTRNPAFILAFG 180
           RVLPNCKHVFHKGCIDQWLPL+SL CPLCR+ TI+EI T+ RP+CSNYW RNPAFILAFG
Sbjct: 131 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAFG 190

Query: 181 LGSSVPLPSQL 189
           LGS+ PLPSQL
Sbjct: 191 LGSNAPLPSQL 200

[Close]

BLAST of Cla97C01G019750 vs. TrEMBL
Match: tr|A0A2N9ICV8|A0A2N9ICV8_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49792 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.4e-21
Identity = 56/115 (48.70%), Postives = 74/115 (64.35%), Query Frame = 0


Query: 69  STFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVF 128
           S+ S +L  +P +IY D  S+S SS   +SL    NC ICL EF  G+ELRVLP CKH++
Sbjct: 2   SSQSDELAALPKFIYDDSCSASCSSATTSSLEPETNCPICLVEFLRGEELRVLPRCKHIY 61

Query: 129 HKGCIDQWLPLKSLHCPLCRDPTIE-EIGTIRPVCSNYWT--RNPAFILAFGLGS 181
           HK CIDQWL L+SLHCP+CRD TIE ++   +  C+N      +P+  LA G  +
Sbjct: 62  HKECIDQWLVLRSLHCPICRDRTIERDVEPKKSNCTNSGAGLGDPSMSLALGFAN 116

[Close]

BLAST of Cla97C01G019750 vs. TrEMBL
Match: tr|A0A0D2SGF6|A0A0D2SGF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G194200 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-19
Identity = 56/161 (34.78%), Postives = 87/161 (54.04%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICV-----TSAIAAVFVISLFVSLFTCV 60
           M+    LS +  RL+   L +H     ++  N+ V     T  +A + +  +F  ++ C+
Sbjct: 1   MDPAKGLSLNSHRLI---LTDHNSPHNDQHLNVLVDRIWSTVMVAVISLGIIFFLIYKCI 60

Query: 61  RRQLNSPSSK---PPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEF 120
            R  N  S +    P  +  S+L  +PV +YG+    SS      ++ E   C ICL E+
Sbjct: 61  FRSPNHSSDENKTEPKPSVDSELDQIPVLVYGESMMPSSEPSCSDTISELETCAICLEEY 120

Query: 121 EHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIE 154
            HG+ +RVLP CKH+FHK CI++WL + SLHCP+CRD  +E
Sbjct: 121 VHGERVRVLPRCKHMFHKDCIEEWLEVPSLHCPICRDKVLE 158

[Close]

BLAST of Cla97C01G019750 vs. TrEMBL
Match: tr|A0A1U8K1J7|A0A1U8K1J7_GOSHI (RING-H2 finger protein ATL39-like OS=Gossypium hirsutum OX=3635 GN=LOC107911057 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 4.9e-19
Identity = 56/161 (34.78%), Postives = 86/161 (53.42%), Query Frame = 0


Query: 1   MNSVDDLSYSYRRLLKDSLFEHPFGSQERIFNICV-----TSAIAAVFVISLFVSLFTCV 60
           M+    LS +  RL+   L +H     ++  N+ V     T  +A + +   F  ++ C+
Sbjct: 1   MDPAKGLSLNSHRLI---LTDHNSPHNDQHLNVLVDRIWSTVMVAVISLGITFFLIYKCI 60

Query: 61  RRQLNSPSSK---PPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEF 120
            R  N  S +    P  +  S+L  +PV +YG+    SS      ++ E   C ICL E+
Sbjct: 61  FRSPNHSSEENKTEPKPSVDSELDQIPVLVYGESMMPSSEPSCSDTISELETCAICLEEY 120

Query: 121 EHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIE 154
            HG+ +RVLP CKH+FHK CI++WL + SLHCP+CRD  +E
Sbjct: 121 VHGERVRVLPRCKHMFHKDCIEEWLEVPSLHCPICRDKVLE 158

[Close]

BLAST of Cla97C01G019750 vs. Swiss-Prot
Match: sp|Q67YI6|ATL65_ARATH (RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.8e-14
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 73  SQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGC 132
           S + T+P+++Y   + +   + G TS    R+C +CL EFE GD +R LP C H FH  C
Sbjct: 124 SVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLEC 183

Query: 133 IDQWLPLKSLHCPLCRDPTIEEIGTIRPV 162
           ID+WL     +CPLCR   +   G + P+
Sbjct: 184 IDEWL-RSHPNCPLCRTAILGSAGVLTPM 211

[Close]

BLAST of Cla97C01G019750 vs. Swiss-Prot
Match: sp|Q9LY41|ATL4_ARATH (E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 67  PSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKH 126
           P +  SS L ++P++ +  ++  SSS         S +C +CL++FE  D+LR+LP C H
Sbjct: 86  PETERSSVLDSLPIFKFSSVTRRSSS-------MNSGDCAVCLSKFEPEDQLRLLPLCCH 145

Query: 127 VFHKGCIDQWLPLKSLHCPLCRDP 151
            FH  CID WL + +  CPLCR P
Sbjct: 146 AFHADCIDIWL-VSNQTCPLCRSP 161

[Close]

BLAST of Cla97C01G019750 vs. Swiss-Prot
Match: sp|Q8H7N9|ATL31_ORYSJ (E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0188200 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.1e-11
Identity = 33/70 (47.14%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 79  PVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLP 138
           P  +YGD+ +  ++  G         C +CLAEF   DELRVLP C HVFH  CID WL 
Sbjct: 113 PTAVYGDVKARMAAKSG------PLECAVCLAEFADSDELRVLPACCHVFHPDCIDPWL- 172

Query: 139 LKSLHCPLCR 149
             ++ CPLCR
Sbjct: 173 AAAVTCPLCR 175

[Close]

BLAST of Cla97C01G019750 vs. Swiss-Prot
Match: sp|Q8GW38|ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 34/93 (36.56%), Postives = 48/93 (51.61%), Query Frame = 0


Query: 56  RRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHG 115
           +RQL        S    + +  +PV++Y ++  +           E  +C +CL EF   
Sbjct: 105 QRQLQQLFHLHDSGLDQALIDALPVFLYKEIKGTK----------EPFDCAVCLCEFSED 164

Query: 116 DELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCR 149
           D+LR+LPNC H FH  CID WL L +  CPLCR
Sbjct: 165 DKLRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]

BLAST of Cla97C01G019750 vs. Swiss-Prot
Match: sp|Q9ZV53|ATL49_ARATH (Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 PE=3 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-10
Identity = 38/113 (33.63%), Postives = 54/113 (47.79%), Query Frame = 0


Query: 53  TCVRRQLNSPSSKPPSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEF 112
           T ++ QL    +   S    S + T+PV+ Y  +     S +         +C +CL EF
Sbjct: 83  TALQGQLQQLFNLHDSGVDQSLIDTLPVFHYKSIVGLKISPF---------DCPVCLCEF 142

Query: 113 EHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIEEIGTIRPVCSNY 166
           E  D+LR+LP C H FH  CID WL L    CPLCR   +    +   + S+Y
Sbjct: 143 ETEDKLRLLPKCSHAFHVECIDTWL-LSHSTCPLCRSNLLSGFSSHHNLSSSY 185

[Close]

BLAST of Cla97C01G019750 vs. TAIR10
Match: AT3G18930.1 (RING/U-box superfamily protein)

HSP 1 Score: 79.7 bits (195), Expect = 2.1e-15
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0


Query: 73  SQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKHVFHKGC 132
           S + T+P+++Y   + +   + G TS    R+C +CL EFE GD +R LP C H FH  C
Sbjct: 124 SVIKTLPLFLYSAAACTGKPAVGKTSAANCRDCAVCLLEFEEGDYVRTLPLCFHAFHLEC 183

Query: 133 IDQWLPLKSLHCPLCRDPTIEEIGTIRPV 162
           ID+WL     +CPLCR   +   G + P+
Sbjct: 184 IDEWL-RSHPNCPLCRTAILGSAGVLTPM 211

[Close]

BLAST of Cla97C01G019750 vs. TAIR10
Match: AT3G60220.1 (TOXICOS EN LEVADURA 4)

HSP 1 Score: 69.7 bits (169), Expect = 2.2e-12
Identity = 34/84 (40.48%), Postives = 50/84 (59.52%), Query Frame = 0


Query: 67  PSSTFSSQLTTMPVYIYGDLSSSSSSSYGFTSLFESRNCVICLAEFEHGDELRVLPNCKH 126
           P +  SS L ++P++ +  ++  SSS         S +C +CL++FE  D+LR+LP C H
Sbjct: 86  PETERSSVLDSLPIFKFSSVTRRSSS-------MNSGDCAVCLSKFEPEDQLRLLPLCCH 145

Query: 127 VFHKGCIDQWLPLKSLHCPLCRDP 151
            FH  CID WL + +  CPLCR P
Sbjct: 146 AFHADCIDIWL-VSNQTCPLCRSP 161

[Close]

BLAST of Cla97C01G019750 vs. TAIR10
Match: AT1G63840.1 (RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0


Query: 101 ESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQW-LPLKSLHCPLCRDPTIEE 155
           ES  C +CL +FE+ DE+R L NC+H+FH+GC+D+W +    + CPLCR   I +
Sbjct: 85  ESECCAVCLYDFENDDEIRRLTNCRHIFHRGCLDRWMMGYNQMTCPLCRTQFIPD 139

[Close]

BLAST of Cla97C01G019750 vs. TAIR10
Match: AT4G33565.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 28/53 (52.83%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 101 ESRNCVICLAEFEHGDELRVLPNCKHVFHKGCIDQWLPLKSLHCPLCRDPTIE 154
           E  +C +CL+EFE  + LR+LP CKH FH  CID WL     +CPLCR P +E
Sbjct: 213 EGTDCSVCLSEFEEEETLRLLPKCKHAFHLYCIDTWL-RSHTNCPLCRAPIVE 264

[Close]

BLAST of Cla97C01G019750 vs. TAIR10
Match: AT5G41400.1 (RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 25/51 (49.02%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 105 CVICLAEFEHGDELRVLPNCKHVFHKGCIDQW-LPLKSLHCPLCRDPTIEE 155
           C +CL EFE+ DE+R L NC+H+FH+ C+D+W +    + CPLCR P I +
Sbjct: 105 CAVCLHEFENDDEIRRLTNCQHIFHRSCLDRWMMGYNQMTCPLCRTPFISD 155

The following BLAST results are available for this feature:

BLAST of Cla97C01G019750 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN48917.1	9.0e-81	82.63	hypothetical protein Csa_6G505940 [Cucumis sativus]	[more]
XP_011658497.1	9.0e-81	82.63	PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus]	[more]
XP_008440820.1	1.3e-79	82.20	PREDICTED: RING-H2 finger protein ATL72-like [Cucumis melo]	[more]
XP_022950353.1	2.7e-69	70.68	RING-H2 finger protein ATL74-like [Cucurbita moschata]	[more]
XP_022977281.1	5.1e-68	70.00	RING-H2 finger protein ATL74-like [Cucurbita maxima]	[more]

BLAST of Cla97C01G019750 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KKP7\|A0A0A0KKP7_CUCSA	5.9e-81	82.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G505940 PE=4 SV=1	[more]
tr\|A0A1S3B2S4\|A0A1S3B2S4_CUCME	8.6e-80	82.20	RING-H2 finger protein ATL72-like OS=Cucumis melo OX=3656 GN=LOC103485128 PE=4 S...	[more]
tr\|A0A2N9ICV8\|A0A2N9ICV8_FAGSY	1.4e-21	48.70	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49792 PE=4 SV=1	[more]
tr\|A0A0D2SGF6\|A0A0D2SGF6_GOSRA	2.2e-19	34.78	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_007G194200 PE=4 ...	[more]
tr\|A0A1U8K1J7\|A0A1U8K1J7_GOSHI	4.9e-19	34.78	RING-H2 finger protein ATL39-like OS=Gossypium hirsutum OX=3635 GN=LOC107911057 ...	[more]

BLAST of Cla97C01G019750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q67YI6\|ATL65_ARATH	3.8e-14	39.33	RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2	[more]
sp\|Q9LY41\|ATL4_ARATH	3.9e-11	40.48	E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana OX=3702 GN=ATL4 PE=1 SV...	[more]
sp\|Q8H7N9\|ATL31_ORYSJ	5.1e-11	47.14	E3 ubiquitin-protein ligase Os03g0188200 OS=Oryza sativa subsp. japonica OX=3994...	[more]
sp\|Q8GW38\|ATL47_ARATH	1.1e-10	36.56	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana OX=3702 GN=ATL47 PE=2 SV=1	[more]
sp\|Q9ZV53\|ATL49_ARATH	1.5e-10	33.63	Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana OX=3702 GN=ATL49 P...	[more]

BLAST of Cla97C01G019750 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G18930.1	2.1e-15	39.33	RING/U-box superfamily protein	[more]
AT3G60220.1	2.2e-12	40.48	TOXICOS EN LEVADURA 4	[more]
AT1G63840.1	2.8e-12	47.27	RING/U-box superfamily protein	[more]
AT4G33565.1	3.7e-12	52.83	RING/U-box superfamily protein	[more]
AT5G41400.1	3.7e-12	49.02	RING/U-box superfamily protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C01G019750.1	Cla97C01G019750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..147 e-value: 5.4E-7 score: 39.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..148 e-value: 7.7E-13 score: 48.4
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..148 score: 12.253
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 77..155 e-value: 4.8E-19 score: 69.3
None	No IPR available	PANTHER	PTHR14155:SF438	RING/U-BOX DOMAIN-CONTAINING PROTEIN	coord: 49..148
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 49..148
None	No IPR available	CDD	cd16486	mRING-H2-C3H2C2D_ZSWM2	coord: 104..148 e-value: 9.73272E-16 score: 67.2517
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 104..157

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C01G019750	Cla014288	Watermelon (97103) v1	wmwmbB234
Cla97C01G019750	Csa6G505940	Cucumber (Chinese Long) v2	cuwmbB412
Cla97C01G019750	MELO3C007907	Melon (DHL92) v3.5.1	mewmbB513
Cla97C01G019750	CSPI06G31810	Wild cucumber (PI 183967)	cpiwmbB433
Cla97C01G019750	CmaCh03G006830	Cucurbita maxima (Rimu)	cmawmbB670
Cla97C01G019750	CmoCh03G007080	Cucurbita moschata (Rifu)	cmowmbB642
Cla97C01G019750	Lsi01G005990	Bottle gourd (USVL1VR-Ls)	lsiwmbB115
Cla97C01G019750	MELO3C007907.2	Melon (DHL92) v3.6.1	medwmbB505
Cla97C01G019750	Carg00590	Silver-seed gourd	carwmbB0426
Cla97C01G019750	CsaV3_6G047140	Cucumber (Chinese Long) v3	cucwmbB430
Cla97C01G019750	Bhi03G000637	Wax gourd	wgowmbB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C01G019750	Wax gourd	wgowmbB346
Cla97C01G019750	Watermelon (97103) v2	wmbwmbB009
Cla97C01G019750	Watermelon (97103) v2	wmbwmbB024
Cla97C01G019750	Watermelon (97103) v2	wmbwmbB042
Cla97C01G019750	Silver-seed gourd	carwmbB0105
Cla97C01G019750	Silver-seed gourd	carwmbB0143
Cla97C01G019750	Silver-seed gourd	carwmbB0669
Cla97C01G019750	Cucumber (Gy14) v2	cgybwmbB089
Cla97C01G019750	Cucumber (Gy14) v2	cgybwmbB394
Cla97C01G019750	Cucumber (Gy14) v1	cgywmbB017
Cla97C01G019750	Cucurbita maxima (Rimu)	cmawmbB164
Cla97C01G019750	Cucurbita maxima (Rimu)	cmawmbB608
Cla97C01G019750	Cucurbita maxima (Rimu)	cmawmbB799
Cla97C01G019750	Cucurbita maxima (Rimu)	cmawmbB875
Cla97C01G019750	Cucurbita moschata (Rifu)	cmowmbB774
Cla97C01G019750	Cucurbita moschata (Rifu)	cmowmbB849
Cla97C01G019750	Wild cucumber (PI 183967)	cpiwmbB096
Cla97C01G019750	Wild cucumber (PI 183967)	cpiwmbB099
Cla97C01G019750	Cucumber (Chinese Long) v3	cucwmbB098
Cla97C01G019750	Cucumber (Chinese Long) v3	cucwmbB101
Cla97C01G019750	Cucumber (Chinese Long) v2	cuwmbB093
Cla97C01G019750	Cucumber (Chinese Long) v2	cuwmbB096
Cla97C01G019750	Bottle gourd (USVL1VR-Ls)	lsiwmbB034
Cla97C01G019750	Bottle gourd (USVL1VR-Ls)	lsiwmbB425
Cla97C01G019750	Melon (DHL92) v3.6.1	medwmbB076
Cla97C01G019750	Melon (DHL92) v3.6.1	medwmbB262
Cla97C01G019750	Melon (DHL92) v3.5.1	mewmbB081
Cla97C01G019750	Melon (DHL92) v3.5.1	mewmbB277
Cla97C01G019750	Watermelon (Charleston Gray)	wcgwmbB089
Cla97C01G019750	Watermelon (Charleston Gray)	wcgwmbB317
Cla97C01G019750	Watermelon (97103) v1	wmwmbB081