CmaCh03G006830 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh03G006830
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionRING finger protein 44
LocationCma_Chr03 : 5644422 .. 5644979 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATCTGCGTCGTTTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCCGCGCCTTATTGTTTTACGTCGTCGTCCTTTGAGGTCAGGAACTGTGTCATATGCTTGGGGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGATCGTTGCTTTGCCCGCTTTGCCGTGAGCTTTCGACAGATGAGATTGGGACCATGAGAAAGCCCGTTTGTACCAATTATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCCGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

mRNA sequence

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATCTGCGTCGTTTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCCGCGCCTTATTGTTTTACGTCGTCGTCCTTTGAGGTCAGGAACTGTGTCATATGCTTGGGGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGATCGTTGCTTTGCCCGCTTTGCCGTGAGCTTTCGACAGATGAGATTGGGACCATGAGAAAGCCCGTTTGTACCAATTATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCCGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

Coding sequence (CDS)

ATGAACTCAGCGCAAGCTCCCGGCTACACCTACAGGCGCCTTCTTAAAGATTCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATCTGCGTCGTTTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCCGCGCCTTATTGTTTTACGTCGTCGTCCTTTGAGGTCAGGAACTGTGTCATATGCTTGGGGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGATCGTTGCTTTGCCCGCTTTGCCGTGAGCTTTCGACAGATGAGATTGGGACCATGAGAAAGCCCGTTTGTACCAATTATTGGGCCCGAAATCCGGCCTTCGTATTGGCCTTCGCCCCCGCCAGTAATGCCCCATTGCCCTCCCAACTGTAA

Protein sequence

MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFAPASNAPLPSQL
Homology
[Close]
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLP 134
           L  +PV +YG            +   C+ICLG+FE G+++RVLP CNH FH  CID WL 
Sbjct: 94  LKQIPVGLYGSGI------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLL 153

Query: 135 LRSLLCPLCRE 146
            RS  CP CR+
Sbjct: 154 SRS-SCPTCRQ 157

[Close]
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.0e-11
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLP 134
           + ++PV++YG+      T S  +  +C +CL EF   D+LR+LP C+HAFH  CID WL 
Sbjct: 186 IDALPVFLYGN-----VTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL- 245

Query: 135 LRSLLCPLC-RELSTDEI 152
           L +  CPLC R LST  +
Sbjct: 246 LSNSTCPLCRRSLSTSNV 257

[Close]
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match: ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQ 131
           S+ + S+PVY Y  +A            +CVICL +FE G+ ++V+P+C H FH  C+D 
Sbjct: 118 SQAVRSLPVYRYTKAAKQ-------RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDT 177

Query: 132 WLPLRSLLCPLCR--ELSTDEIGTMRKP 158
           WL    + CPLCR  +L +D+   M++P
Sbjct: 178 WLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDEL 114
           ++RQL        S      + ++PV++Y +         + E  +C +CL EF   D+L
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKE------IKGTKEPFDCAVCLCEFSEDDKL 163

Query: 115 RVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 145
           R+LPNC+HAFH  CID WL L +  CPLCR
Sbjct: 164 RLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match: ATL8_ARATH (RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 4.9e-11
Identity = 41/121 (33.88%), Postives = 57/121 (47.11%), Query Frame = 1 

Query: 31  VTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLS-----SMPVYIYGD 90
           V +C ++ I     +S    L     R  +  +  PP +  ++ L      S+P   Y  
Sbjct: 34  VLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSP 93

Query: 91  SAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRE 147
            +P      + ++  C ICL EF  GDELRVLP C H FH  CID WL   S  CP CR+
Sbjct: 94  DSP-----PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHS-SCPSCRQ 148

[Close]
BLAST of CmaCh03G006830 vs. TrEMBL
Match: A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 4.1e-73
Identity = 141/191 (73.82%), Postives = 155/191 (81.15%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSFEVRNCVICLGEFELGDEL 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS  FE R CVICL EFE GDEL
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS--FESRTCVICLAEFEYGDEL 143

Query: 121 RVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFA 180
           RVLPNC H FHKGCIDQWLPLRSLLCPLCRE +  EI TMR+PVC+NYW+RNPAF+LAF 
Sbjct: 144 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFG 203

Query: 181 PASNAPLPSQL 186
             SNAPLPSQL
Sbjct: 204 LGSNAPLPSQL 212

[Close]
BLAST of CmaCh03G006830 vs. TrEMBL
Match: A5B1V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.0e-15
Identity = 55/145 (37.93%), Postives = 78/145 (53.79%), Query Frame = 1 

Query: 12  RRLLKDSLLQRPFGHHERLVTICV-VSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSST 71
           RRLL+ S  +  +       TIC  V+    AFV   FI   T  R +     S+   ST
Sbjct: 9   RRLLESSSEESIY--RSLTTTICAFVAGFGMAFVFGAFIVSCTIRRLRGYGDESQHHGST 68

Query: 72  CSRQLSS----------MPVYIYGDS-APYCFTSSSFEVRNCVICLGEFELGDELRVLPN 131
            S   SS          +PV+IYG   +  C  ++S+E++ C ICL E+E G+ + VLP 
Sbjct: 69  ASAASSSGQRRREHVVAIPVHIYGPGPSSSCAATTSYELQACAICLCEYENGERVSVLPR 128

Query: 132 CNHAFHKGCIDQWLPLRSLLCPLCR 145
           C H FHK CI+QW+P++S+ CP+CR
Sbjct: 129 CKHMFHKDCIEQWVPVKSVNCPICR 151

[Close]
BLAST of CmaCh03G006830 vs. TrEMBL
Match: V4RVB6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 4.3e-14
Identity = 46/128 (35.94%), Postives = 72/128 (56.25%), Query Frame = 1 

Query: 32  TICVVSAIAAAFVLSLFI---SLFTCFRRQLTSASSKPPSSTCSR----QLSSMPVYIYG 91
           T+ ++ AI     L  F+   +++ CF R   S   +     C R    +L+++PV+ YG
Sbjct: 18  TLSIIIAIIIVVCLICFLLIKTVYRCFNRSNQSPHGQQECQDCHRHREDKLAAIPVFAYG 77

Query: 92  DSAPYCFTSSSFEVRN--CVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPL 151
           D A    T+SS    N  C ICL ++   D +R+LP C H FHK CID+WL ++SL CP+
Sbjct: 78  DVATGLPTNSSTTFANKVCAICLDDYADTDVVRILPRCLHVFHKECIDKWLCVKSLQCPI 137

[Close]
BLAST of CmaCh03G006830 vs. TrEMBL
Match: B9T2K4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0280460 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 51/119 (42.86%), Postives = 60/119 (50.42%), Query Frame = 1 

Query: 33  ICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLS-----SMPVYIYGDSA 92
           ICVV  IA A    L         R   SASS P  +  ++ L      S+P + YG +A
Sbjct: 41  ICVVGLIAVARCAWL---------RHSGSASSSPSHAAANKGLKKKILQSLPKFTYGSAA 100

Query: 93  PYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCREL 147
             C     F    C ICLGEF  GDE+RVLP C H FH GCID WL   S  CP CR++
Sbjct: 101 GSC----KFASTECAICLGEFAQGDEVRVLPQCGHGFHVGCIDTWLGSHS-SCPSCRQI 145

[Close]
BLAST of CmaCh03G006830 vs. TrEMBL
Match: B9SLG1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686180 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 2.2e-13
Identity = 51/121 (42.15%), Postives = 63/121 (52.07%), Query Frame = 1 

Query: 33  ICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLS-----SMPVYIYGDSA 92
           ICVV  IA A    L         R+  SASS P  +  ++ L      S+P + YG +A
Sbjct: 92  ICVVGLIAVARCAWL---------RRTGSASSYPSQAAANKGLKKKILQSLPKFTYGSAA 151

Query: 93  PYCFTSSS--FEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRE 147
                + S  +    C ICLGEFE GDE+RVLP C H FH GCID WL   S  CP CR+
Sbjct: 152 ATAAAAGSCKYASTECAICLGEFEEGDEVRVLPQCGHGFHVGCIDTWLGSHS-SCPSCRQ 202

[Close]
BLAST of CmaCh03G006830 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 33/71 (46.48%), Postives = 42/71 (59.15%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLP 134
           L  +PV +YG            +   C+ICLG+FE G+++RVLP CNH FH  CID WL 
Sbjct: 94  LKQIPVGLYGSGI------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWLL 153

Query: 135 LRSLLCPLCRE 146
            RS  CP CR+
Sbjct: 154 SRS-SCPTCRQ 157

[Close]
BLAST of CmaCh03G006830 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 5.6e-13
Identity = 35/78 (44.87%), Postives = 49/78 (62.82%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLP 134
           + ++PV++YG+      T S  +  +C +CL EF   D+LR+LP C+HAFH  CID WL 
Sbjct: 186 IDALPVFLYGN-----VTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWL- 245

Query: 135 LRSLLCPLC-RELSTDEI 152
           L +  CPLC R LST  +
Sbjct: 246 LSNSTCPLCRRSLSTSNV 257

[Close]
BLAST of CmaCh03G006830 vs. TAIR10
Match: AT2G27940.1 (AT2G27940.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQ 131
           S+ + S+PVY Y  +A            +CVICL +FE G+ ++V+P+C H FH  C+D 
Sbjct: 118 SQAVRSLPVYRYTKAAKQ-------RNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVDT 177

Query: 132 WLPLRSLLCPLCR--ELSTDEIGTMRKP 158
           WL    + CPLCR  +L +D+   M++P
Sbjct: 178 WLS-SYVTCPLCRSNQLFSDKDLGMQEP 197

[Close]
BLAST of CmaCh03G006830 vs. TAIR10
Match: AT1G23980.1 (AT1G23980.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 35/90 (38.89%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSFEVRNCVICLGEFELGDEL 114
           ++RQL        S      + ++PV++Y +         + E  +C +CL EF   D+L
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKE------IKGTKEPFDCAVCLCEFSEDDKL 163

Query: 115 RVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 145
           R+LPNC+HAFH  CID WL L +  CPLCR
Sbjct: 164 RLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of CmaCh03G006830 vs. TAIR10
Match: AT5G01880.1 (AT5G01880.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 43/120 (35.83%), Postives = 58/120 (48.33%), Query Frame = 1 

Query: 33  ICVVSAIAAAFVLSLFI-SLFTCFRRQLTSASSKPPSSTCS-------RQLSSMPVYIYG 92
           + +++A+  A +L+L + S+  C  R     SS   + T +       R+L   PV  YG
Sbjct: 35  VIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPVAEYG 94

Query: 93  DSAPYCFTSSSFEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 145
                           C ICLGEF  G+ +RVLP CNH+FH  CID WL   S  CP CR
Sbjct: 95  SG------EVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SCPNCR 147

[Close]
BLAST of CmaCh03G006830 vs. NCBI nr
Match: gi|778722491|ref|XP_011658497.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 141/191 (73.82%), Postives = 155/191 (81.15%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSFEVRNCVICLGEFELGDEL 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS  FE R CVICL EFE GDEL
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS--FESRTCVICLAEFEYGDEL 120

Query: 121 RVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFA 180
           RVLPNC H FHKGCIDQWLPLRSLLCPLCRE +  EI TMR+PVC+NYW+RNPAF+LAF 
Sbjct: 121 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFG 180

Query: 181 PASNAPLPSQL 186
             SNAPLPSQL
Sbjct: 181 LGSNAPLPSQL 189

[Close]
BLAST of CmaCh03G006830 vs. NCBI nr
Match: gi|700193713|gb|KGN48917.1| (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 282.3 bits (721), Expect = 5.9e-73
Identity = 141/191 (73.82%), Postives = 155/191 (81.15%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDSLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKDSL ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSFEVRNCVICLGEFELGDEL 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS  FE R CVICL EFE GDEL
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS--FESRTCVICLAEFEYGDEL 143

Query: 121 RVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAFA 180
           RVLPNC H FHKGCIDQWLPLRSLLCPLCRE +  EI TMR+PVC+NYW+RNPAF+LAF 
Sbjct: 144 RVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAFG 203

Query: 181 PASNAPLPSQL 186
             SNAPLPSQL
Sbjct: 204 LGSNAPLPSQL 212

[Close]
BLAST of CmaCh03G006830 vs. NCBI nr
Match: gi|659080492|ref|XP_008440821.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.9e-72
Identity = 142/192 (73.96%), Postives = 156/192 (81.25%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDS-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKDS L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSFEVRNCVICLGEFELGDE 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS  FE RNCVICL EFE GDE
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS--FESRNCVICLAEFEYGDE 120

Query: 121 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAF 180
           LRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +  EI TMR+P+C+NYWARNPAF+LAF
Sbjct: 121 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAF 180

Query: 181 APASNAPLPSQL 186
              SNAPLPSQL
Sbjct: 181 GLGSNAPLPSQL 190

[Close]
BLAST of CmaCh03G006830 vs. NCBI nr
Match: gi|659080490|ref|XP_008440820.1| (PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo])

HSP 1 Score: 280.0 bits (715), Expect = 2.9e-72
Identity = 142/192 (73.96%), Postives = 156/192 (81.25%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDS-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKDS L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSFEVRNCVICLGEFELGDE 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS  FE RNCVICL EFE GDE
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS--FESRNCVICLAEFEYGDE 130

Query: 121 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSTDEIGTMRKPVCTNYWARNPAFVLAF 180
           LRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +  EI TMR+P+C+NYWARNPAF+LAF
Sbjct: 131 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILAF 190

Query: 181 APASNAPLPSQL 186
              SNAPLPSQL
Sbjct: 191 GLGSNAPLPSQL 200

[Close]
BLAST of CmaCh03G006830 vs. NCBI nr
Match: gi|720049887|ref|XP_010271587.1| (PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera])

HSP 1 Score: 110.5 bits (275), Expect = 3.1e-21
Identity = 71/175 (40.57%), Postives = 91/175 (52.00%), Query Frame = 1 

Query: 28  ERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCS---------RQLSSM 87
           ER + +   S +    ++ LF S+F C RR   S SS P SS  S           L ++
Sbjct: 17  ERTLIVLSSSFVVMMLIVFLFKSIFRCTRR--CSHSSHPQSSQSSISGTIQPYSNDLDAI 76

Query: 88  PVYIYGDS--APYCFTSSS--FEVRNCVICLGEFELGDELRVLPNCNHAFHKGCIDQWLP 147
           P+ IYG S  +P  F+ SS  FE  NC ICL EFE G  +RVLP C H FHK CIDQWLP
Sbjct: 77  PISIYGASPTSPPSFSCSSTPFESENCAICLAEFEYGQTVRVLPRCKHIFHKDCIDQWLP 136

Query: 148 LRSLLCPLCRELSTDEIGTMRKPVCTNYWAR----NPAFVLAFAPASNAPLPSQL 186
            RS  CP+CR+ + +         C N   R    +   VL F P+ +  LP+QL
Sbjct: 137 ARSSFCPVCRDQAVENDVNPPTTNCRNAGGRTGNGSALLVLHFTPSVH--LPNQL 187

The following BLAST results are available for this feature:
BLAST of CmaCh03G006830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL72_ARATH1.0e-1146.48RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL48_ARATH1.0e-1144.87RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2[more]
ATL57_ARATH3.8e-1138.64RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1[more]
ATL47_ARATH3.8e-1138.89RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
ATL8_ARATH4.9e-1133.88RING-H2 finger protein ATL8 OS=Arabidopsis thaliana GN=ATL8 PE=2 SV=2[more]
BLAST of CmaCh03G006830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP7_CUCSA4.1e-7373.82Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1[more]
A5B1V6_VITVI3.0e-1537.93Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=... [more]
V4RVB6_9ROSI4.3e-1435.94Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1[more]
B9T2K4_RICCO2.2e-1342.86Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0280460 PE=4 SV=1[more]
B9SLG1_RICCO2.2e-1342.15Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686180 PE=4 SV=1[more]
BLAST of CmaCh03G006830 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G10910.15.6e-1346.48 RING/U-box superfamily protein[more]
AT3G48030.15.6e-1344.87 hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin... [more]
AT2G27940.12.1e-1238.64 RING/U-box superfamily protein[more]
AT1G23980.12.1e-1238.89 RING/U-box superfamily protein[more]
AT5G01880.12.8e-1235.83 RING/U-box superfamily protein[more]
BLAST of CmaCh03G006830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722491|ref|XP_011658497.1|5.9e-7373.82PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
gi|700193713|gb|KGN48917.1|5.9e-7373.82hypothetical protein Csa_6G505940 [Cucumis sativus][more]
gi|659080492|ref|XP_008440821.1|2.9e-7273.96PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo][more]
gi|659080490|ref|XP_008440820.1|2.9e-7273.96PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo][more]
gi|720049887|ref|XP_010271587.1|3.1e-2140.57PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh03G006830.1CmaCh03G006830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 100..144
score: 3.1
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 101..143
score: 4.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 101..144
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 99..145
score: 1.3
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 30..144
score: 1.9
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 100..153
score: 2.31

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh03G006830Cla014288Watermelon (97103) v1cmawmB632
CmaCh03G006830Csa6G505940Cucumber (Chinese Long) v2cmacuB681
CmaCh03G006830MELO3C007907Melon (DHL92) v3.5.1cmameB617
CmaCh03G006830CSPI06G31810Wild cucumber (PI 183967)cmacpiB689
CmaCh03G006830CmoCh03G007080Cucurbita moschata (Rifu)cmacmoB653
CmaCh03G006830Lsi01G005990Bottle gourd (USVL1VR-Ls)cmalsiB597
CmaCh03G006830Cp4.1LG10g00230Cucurbita pepo (Zucchini)cmacpeB656
CmaCh03G006830MELO3C007907.2Melon (DHL92) v3.6.1cmamedB703
CmaCh03G006830CsaV3_6G047140Cucumber (Chinese Long) v3cmacucB0809
CmaCh03G006830Cla97C01G019750Watermelon (97103) v2cmawmbB670
CmaCh03G006830Bhi03G000637Wax gourdcmawgoB0788
CmaCh03G006830Carg00590Silver-seed gourdcarcmaB0567
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh03G006830Cucumber (Chinese Long) v3cmacucB0783
CmaCh03G006830Cucumber (Chinese Long) v3cmacucB0784
CmaCh03G006830Cucumber (Chinese Long) v3cmacucB0790
CmaCh03G006830Watermelon (97103) v2cmawmbB700
CmaCh03G006830Cucurbita maxima (Rimu)cmacmaB185
CmaCh03G006830Cucurbita maxima (Rimu)cmacmaB422
CmaCh03G006830Cucurbita maxima (Rimu)cmacmaB519
CmaCh03G006830Cucurbita maxima (Rimu)cmacmaB523
CmaCh03G006830Cucumber (Gy14) v1cgycmaB0047
CmaCh03G006830Cucumber (Gy14) v1cgycmaB0937
CmaCh03G006830Cucurbita moschata (Rifu)cmacmoB633
CmaCh03G006830Cucurbita moschata (Rifu)cmacmoB647
CmaCh03G006830Cucurbita moschata (Rifu)cmacmoB667
CmaCh03G006830Wild cucumber (PI 183967)cmacpiB663
CmaCh03G006830Wild cucumber (PI 183967)cmacpiB664
CmaCh03G006830Wild cucumber (PI 183967)cmacpiB669
CmaCh03G006830Cucumber (Chinese Long) v2cmacuB661
CmaCh03G006830Cucumber (Chinese Long) v2cmacuB655
CmaCh03G006830Cucumber (Chinese Long) v2cmacuB656
CmaCh03G006830Melon (DHL92) v3.5.1cmameB589
CmaCh03G006830Melon (DHL92) v3.5.1cmameB594
CmaCh03G006830Watermelon (Charleston Gray)cmawcgB579
CmaCh03G006830Cucurbita pepo (Zucchini)cmacpeB661
CmaCh03G006830Cucurbita pepo (Zucchini)cmacpeB678
CmaCh03G006830Cucurbita pepo (Zucchini)cmacpeB671
CmaCh03G006830Bottle gourd (USVL1VR-Ls)cmalsiB596
CmaCh03G006830Bottle gourd (USVL1VR-Ls)cmalsiB619
CmaCh03G006830Bottle gourd (USVL1VR-Ls)cmalsiB615
CmaCh03G006830Cucumber (Gy14) v2cgybcmaB242
CmaCh03G006830Cucumber (Gy14) v2cgybcmaB408
CmaCh03G006830Cucumber (Gy14) v2cgybcmaB831
CmaCh03G006830Melon (DHL92) v3.6.1cmamedB672
CmaCh03G006830Melon (DHL92) v3.6.1cmamedB678
CmaCh03G006830Melon (DHL92) v3.6.1cmamedB685
CmaCh03G006830Silver-seed gourdcarcmaB0912
CmaCh03G006830Silver-seed gourdcarcmaB1355