Cp4.1LG10g00230 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG10g00230
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionRING finger protein
LocationCp4.1LG10 : 3839902 .. 3840462 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCAGCGCAAGCTCCCGGCTACACTTACAGGCGCCTTCTTAAAGATCCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGATATTGGGAGCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAACCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAATTGTAA

mRNA sequence

ATGAACTCAGCGCAAGCTCCCGGCTACACTTACAGGCGCCTTCTTAAAGATCCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGATATTGGGAGCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAACCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAATTGTAA

Coding sequence (CDS)

ATGAACTCAGCGCAAGCTCCCGGCTACACTTACAGGCGCCTTCTTAAAGATCCCTTACTCCAACGTCCATTTGGACACCATGAAAGACTGGTTACCATATGCGTCGTCTCCGCCATCGCGGCTGCCTTCGTGCTCTCTTTGTTCATCTCCCTCTTCACTTGCTTTCGGCGTCAGCTGACCTCGGCGTCCTCTAAGCCACCCTCGTCGACATGTAGCAGGCAGCTCAGTAGCATGCCTGTATACATATATGGCGACTCGGCGCCTTATTGTTTTACGTCGTCGTCGTCCTTTGAGGCCAGGAACTGTGTCATATGCTTGGCGGAGTTCGAGCTTGGAGATGAGCTTCGTGTTCTGCCCAACTGCAACCATGCGTTCCATAAAGGTTGCATTGATCAGTGGCTGCCCCTGAGGTCGTTGCTTTGCCCGCTTTGCCGGGAGCTTTCGATAGATGATATTGGGAGCATGAGGAAGCCCGTTTGTACCAATCATTGGGCCCGAAACCCGGCCTTCGTATTGGCCTTCGCCCCTGCCAGTAATGCCCCATTGCCCTCCCAATTGTAA

Protein sequence

MNSAQAPGYTYRRLLKDPLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLAFAPASNAPLPSQL
Homology
[Close]
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 101 NCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKP 159
           +C +CL EFE  D+LR+LP C+HAFH  CID WL L    CPLCR   + D+ S + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match: ATL57_ARATH (RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCRE---LSIDDIGSMRKP 159
            WL    + CPLCR     S  D+G    P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEPP 198

[Close]
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWL 134
           L  +PV +YG             +A  C+ICL +FE G+++RVLP CNH FH  CID WL
Sbjct: 94  LKQIPVGLYGSGI-------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWL 153

Query: 135 PLRSLLCPLCRE 147
             RS  CP CR+
Sbjct: 154 LSRS-SCPTCRQ 157

[Close]
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 5.0e-11
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      + ++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEI-------KGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC+HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match: ATL74_ARATH (RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 6.5e-11
Identity = 44/126 (34.92%), Postives = 61/126 (48.41%), Query Frame = 1 

Query: 33  ICVVSAIAAAFVLSLFI-SLFTCFRRQLTSASSKPPSSTCS-------RQLSSMPVYIYG 92
           + +++A+  A +L+L + S+  C  R     SS   + T +       R+L   PV  YG
Sbjct: 35  VIILAALLCALILALGLNSILRCAMRCGFGLSSSAAAGTVADRAGLKKRELKKFPVAEYG 94

Query: 93  DSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLC 151
                  +      A  C ICL EF  G+ +RVLP CNH+FH  CID WL   S  CP C
Sbjct: 95  -------SGEVKIAATECAICLGEFADGERVRVLPPCNHSFHMSCIDTWLVSHS-SCPNC 152

[Close]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match: A0A0A0KKP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.1e-72
Identity = 139/192 (72.40%), Postives = 157/192 (81.77%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDPLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKD L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLAF 180
           LRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +I +I +MR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match: A5B1V6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.7e-15
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1 

Query: 32  TICV-VSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLSS----------MPV 91
           TIC  V+    AFV   FI   T  R +     S+   ST S   SS          +PV
Sbjct: 27  TICAFVAGFGMAFVFGAFIVSCTIRRLRGYGDESQHHGSTASAASSSGQRRREHVVAIPV 86

Query: 92  YIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLL 146
           +IYG        +++S+E + C ICL E+E G+ + VLP C H FHK CI+QW+P++S+ 
Sbjct: 87  HIYGPGPSSSCAATTSYELQACAICLCEYENGERVSVLPRCKHMFHKDCIEQWVPVKSVN 146

[Close]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match: V4RVB6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.6e-14
Identity = 47/127 (37.01%), Postives = 74/127 (58.27%), Query Frame = 1 

Query: 32  TICVVSAIAAAFVLSLFI---SLFTCFRRQLTSASSKPPSSTCSR----QLSSMPVYIYG 91
           T+ ++ AI     L  F+   +++ CF R   S   +     C R    +L+++PV+ YG
Sbjct: 18  TLSIIIAIIIVVCLICFLLIKTVYRCFNRSNQSPHGQQECQDCHRHREDKLAAIPVFAYG 77

Query: 92  DSAPYCFTSSSS-FEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPL 151
           D A    T+SS+ F  + C ICL ++   D +R+LP C H FHK CID+WL ++SL CP+
Sbjct: 78  DVATGLPTNSSTTFANKVCAICLDDYADTDVVRILPRCLHVFHKECIDKWLCVKSLQCPI 137

[Close]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match: A0A0D2SGF6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.7e-13
Identity = 47/144 (32.64%), Postives = 75/144 (52.08%), Query Frame = 1 

Query: 28  ERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSK---PPSSTCSRQLSSMPVYIYG 87
           +R+ +  +V+ I+   +   F  ++ C  R    +S +    P  +   +L  +PV +YG
Sbjct: 33  DRIWSTVMVAVISLGII---FFLIYKCIFRSPNHSSDENKTEPKPSVDSELDQIPVLVYG 92

Query: 88  DSA-----PYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSL 147
           +S      P C  + S  E   C ICL E+  G+ +RVLP C H FHK CI++WL + SL
Sbjct: 93  ESMMPSSEPSCSDTISELET--CAICLEEYVHGERVRVLPRCKHMFHKDCIEEWLEVPSL 152

Query: 148 LCPLCRELSIDD-IGSMRKPVCTN 163
            CP+CR+  ++  + S R   C N
Sbjct: 153 HCPICRDKVLEHCLQSARSNNCRN 171

[Close]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match: B9SLG1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686180 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.8e-13
Identity = 50/123 (40.65%), Postives = 64/123 (52.03%), Query Frame = 1 

Query: 33  ICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLS-----SMPVYIYGDSA 92
           ICVV  IA A    L         R+  SASS P  +  ++ L      S+P + YG +A
Sbjct: 92  ICVVGLIAVARCAWL---------RRTGSASSYPSQAAANKGLKKKILQSLPKFTYGSAA 151

Query: 93  PYCFTSSS-SFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRE 150
                + S  + +  C ICL EFE GDE+RVLP C H FH GCID WL   S  CP CR+
Sbjct: 152 ATAAAAGSCKYASTECAICLGEFEEGDEVRVLPQCGHGFHVGCIDTWLGSHS-SCPSCRQ 204

[Close]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 1 

Query: 101 NCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKP 159
           +C +CL EFE  D+LR+LP C+HAFH  CID WL L    CPLCR   + D+ S + P
Sbjct: 133 DCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWL-LSHSTCPLCRSSLLSDLSSHQDP 189

[Close]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match: AT2G27940.1 (AT2G27940.1 RING/U-box superfamily protein)

HSP 1 Score: 70.9 bits (172), Expect = 9.6e-13
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1 

Query: 72  SRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCID 131
           S+ + S+PVY Y        T ++     +CVICL++FE G+ ++V+P+C H FH  C+D
Sbjct: 118 SQAVRSLPVYRY--------TKAAKQRNEDCVICLSDFEEGETVKVIPHCGHVFHVDCVD 177

Query: 132 QWLPLRSLLCPLCRE---LSIDDIGSMRKP 159
            WL    + CPLCR     S  D+G    P
Sbjct: 178 TWLS-SYVTCPLCRSNQLFSDKDLGMQEPP 198

[Close]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 2.1e-12
Identity = 33/72 (45.83%), Postives = 42/72 (58.33%), Query Frame = 1 

Query: 75  LSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWL 134
           L  +PV +YG             +A  C+ICL +FE G+++RVLP CNH FH  CID WL
Sbjct: 94  LKQIPVGLYGSGI-------IDMKATECLICLGDFEDGEKVRVLPKCNHGFHVRCIDTWL 153

Query: 135 PLRSLLCPLCRE 147
             RS  CP CR+
Sbjct: 154 LSRS-SCPTCRQ 157

[Close]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match: AT1G23980.1 (AT1G23980.1 RING/U-box superfamily protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.8e-12
Identity = 35/91 (38.46%), Postives = 50/91 (54.95%), Query Frame = 1 

Query: 55  FRRQLTSASSKPPSSTCSRQLSSMPVYIYGDSAPYCFTSSSSFEARNCVICLAEFELGDE 114
           ++RQL        S      + ++PV++Y +          + E  +C +CL EF   D+
Sbjct: 104 YQRQLQQLFHLHDSGLDQALIDALPVFLYKEI-------KGTKEPFDCAVCLCEFSEDDK 163

Query: 115 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 146
           LR+LPNC+HAFH  CID WL L +  CPLCR
Sbjct: 164 LRLLPNCSHAFHIDCIDTWL-LSNSTCPLCR 186

[Close]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match: AT1G76410.1 (AT1G76410.1 RING/U-box superfamily protein)

HSP 1 Score: 68.9 bits (167), Expect = 3.7e-12
Identity = 41/124 (33.06%), Postives = 57/124 (45.97%), Query Frame = 1 

Query: 31  VTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCSRQLS-----SMPVYIYGD 90
           V +C ++ I     +S    L     R  +  +  PP +  ++ L      S+P   Y  
Sbjct: 34  VLLCALTCIIGLIAVSRCAWLRRIASRNRSDQTHPPPVAAANKGLKKKVLRSLPKLTYSP 93

Query: 91  SAPYCFTSSSSFEARNCVICLAEFELGDELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCR 150
            +P       + +   C ICL EF  GDELRVLP C H FH  CID WL   S  CP CR
Sbjct: 94  DSP------PAEKLVECAICLTEFAAGDELRVLPQCGHGFHVSCIDTWLGSHS-SCPSCR 150

[Close]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match: gi|778722491|ref|XP_011658497.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 3.0e-72
Identity = 139/192 (72.40%), Postives = 157/192 (81.77%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDPLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKD L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 1   MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 60

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 61  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 120

Query: 121 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLAF 180
           LRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +I +I +MR+PVC+N+W+RNPAF+LAF
Sbjct: 121 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 180

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 181 GLGSNAPLPSQL 189

[Close]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match: gi|700193713|gb|KGN48917.1| (hypothetical protein Csa_6G505940 [Cucumis sativus])

HSP 1 Score: 280.0 bits (715), Expect = 3.0e-72
Identity = 139/192 (72.40%), Postives = 157/192 (81.77%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDPLLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQLT 60
           MNS    GY+ RRLLKD L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL 
Sbjct: 24  MNSVDDLGYSNRRLLKDSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQLN 83

Query: 61  SASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGDE 120
           S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+R CVICLAEFE GDE
Sbjct: 84  SPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRTCVICLAEFEYGDE 143

Query: 121 LRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLAF 180
           LRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +I +I +MR+PVC+N+W+RNPAF+LAF
Sbjct: 144 LRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPVCSNYWSRNPAFILAF 203

Query: 181 APASNAPLPSQL 187
              SNAPLPSQL
Sbjct: 204 GLGSNAPLPSQL 212

[Close]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match: gi|659080490|ref|XP_008440820.1| (PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 140/193 (72.54%), Postives = 158/193 (81.87%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDP-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKD  L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 11  MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 70

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+RNCVICLAEFE GD
Sbjct: 71  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRNCVICLAEFEYGD 130

Query: 121 ELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLA 180
           ELRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +I +I +MR+P+C+N+WARNPAF+LA
Sbjct: 131 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 190

Query: 181 FAPASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 191 FGLGSNAPLPSQL 200

[Close]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match: gi|659080492|ref|XP_008440821.1| (PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo])

HSP 1 Score: 277.7 bits (709), Expect = 1.5e-71
Identity = 140/193 (72.54%), Postives = 158/193 (81.87%), Query Frame = 1 

Query: 1   MNSAQAPGYTYRRLLKDP-LLQRPFGHHERLVTICVVSAIAAAFVLSLFISLFTCFRRQL 60
           MNS    GY+ RRLLKD  L ++PFG+ ER+VTIC  SAIAA FV+SLFISLFTCFRRQL
Sbjct: 1   MNSVDDLGYSNRRLLKDSSLFEQPFGNRERIVTICATSAIAALFVISLFISLFTCFRRQL 60

Query: 61  TSASSKPPSSTCSRQL-SSMPVYIYGDSAP-----YCFTSSSSFEARNCVICLAEFELGD 120
            S SSKP SSTCS QL ++MPVYIYGDS+      YCFTS   FE+RNCVICLAEFE GD
Sbjct: 61  NSPSSKPLSSTCSSQLLTTMPVYIYGDSSSNMPSSYCFTS---FESRNCVICLAEFEYGD 120

Query: 121 ELRVLPNCNHAFHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWARNPAFVLA 180
           ELRVLPNC H FHKGCIDQWLPLRSLLCPLCRE +I +I +MR+P+C+N+WARNPAF+LA
Sbjct: 121 ELRVLPNCKHVFHKGCIDQWLPLRSLLCPLCREHTIKEIETMRRPLCSNYWARNPAFILA 180

Query: 181 FAPASNAPLPSQL 187
           F   SNAPLPSQL
Sbjct: 181 FGLGSNAPLPSQL 190

[Close]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match: gi|720049887|ref|XP_010271587.1| (PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera])

HSP 1 Score: 115.9 bits (289), Expect = 7.4e-23
Identity = 75/186 (40.32%), Postives = 102/186 (54.84%), Query Frame = 1 

Query: 18  PLLQRPFGHH-ERLVTICVVSAIAAAFVLSLFISLFTCFRRQLTSASSKPPSSTCS---- 77
           P L   +G + ER + +   S +    ++ LF S+F C RR   S SS P SS  S    
Sbjct: 6   PTLLPGYGSNLERTLIVLSSSFVVMMLIVFLFKSIFRCTRR--CSHSSHPQSSQSSISGT 65

Query: 78  -----RQLSSMPVYIYGDS--APYCFTSSSS-FEARNCVICLAEFELGDELRVLPNCNHA 137
                  L ++P+ IYG S  +P  F+ SS+ FE+ NC ICLAEFE G  +RVLP C H 
Sbjct: 66  IQPYSNDLDAIPISIYGASPTSPPSFSCSSTPFESENCAICLAEFEYGQTVRVLPRCKHI 125

Query: 138 FHKGCIDQWLPLRSLLCPLCRELSIDDIGSMRKPVCTNHWAR----NPAFVLAFAPASNA 187
           FHK CIDQWLP RS  CP+CR+ ++++  +     C N   R    +   VL F P+ + 
Sbjct: 126 FHKDCIDQWLPARSSFCPVCRDQAVENDVNPPTTNCRNAGGRTGNGSALLVLHFTPSVH- 185

The following BLAST results are available for this feature:
BLAST of Cp4.1LG10g00230 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATL13_ARATH3.4e-1251.72RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2[more]
ATL57_ARATH1.7e-1137.78RING-H2 finger protein ATL57 OS=Arabidopsis thaliana GN=ATL57 PE=2 SV=1[more]
ATL72_ARATH3.8e-1145.83RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1[more]
ATL47_ARATH5.0e-1138.46RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1[more]
ATL74_ARATH6.5e-1134.92RING-H2 finger protein ATL74 OS=Arabidopsis thaliana GN=ATL74 PE=2 SV=1[more]
BLAST of Cp4.1LG10g00230 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KKP7_CUCSA2.1e-7272.40Uncharacterized protein OS=Cucumis sativus GN=Csa_6G505940 PE=4 SV=1[more]
A5B1V6_VITVI6.7e-1539.20Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g03460 PE=4 SV=... [more]
V4RVB6_9ROSI2.6e-1437.01Uncharacterized protein OS=Citrus clementina GN=CICLE_v10027129mg PE=4 SV=1[more]
A0A0D2SGF6_GOSRA3.7e-1332.64Uncharacterized protein OS=Gossypium raimondii GN=B456_007G194200 PE=4 SV=1[more]
B9SLG1_RICCO4.8e-1340.65Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0686180 PE=4 SV=1[more]
BLAST of Cp4.1LG10g00230 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G30400.11.9e-1351.72 RING/U-box superfamily protein[more]
AT2G27940.19.6e-1337.78 RING/U-box superfamily protein[more]
AT3G10910.12.1e-1245.83 RING/U-box superfamily protein[more]
AT1G23980.12.8e-1238.46 RING/U-box superfamily protein[more]
AT1G76410.13.7e-1233.06 RING/U-box superfamily protein[more]
BLAST of Cp4.1LG10g00230 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778722491|ref|XP_011658497.1|3.0e-7272.40PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Cucumis sativus][more]
gi|700193713|gb|KGN48917.1|3.0e-7272.40hypothetical protein Csa_6G505940 [Cucumis sativus][more]
gi|659080490|ref|XP_008440820.1|1.5e-7172.54PREDICTED: RING-H2 finger protein ATL72-like isoform X1 [Cucumis melo][more]
gi|659080492|ref|XP_008440821.1|1.5e-7172.54PREDICTED: probable E3 ubiquitin-protein ligase RHA2B isoform X2 [Cucumis melo][more]
gi|720049887|ref|XP_010271587.1|7.4e-2340.32PREDICTED: RING-H2 finger protein ATL74-like [Nelumbo nucifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG10g00230.1Cp4.1LG10g00230.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 101..145
score: 3.2
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 102..144
score: 7.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 102..145
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 100..146
score: 1.5
NoneNo IPR availableunknownCoilCoilcoord: 186..186
scor
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 30..145
score: 7.2
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 95..152
score: 4.42

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG10g00230CmaCh03G006830Cucurbita maxima (Rimu)cmacpeB656
Cp4.1LG10g00230CmoCh03G007080Cucurbita moschata (Rifu)cmocpeB606
Cp4.1LG10g00230Cla014288Watermelon (97103) v1cpewmB073
Cp4.1LG10g00230Csa6G505940Cucumber (Chinese Long) v2cpecuB085
Cp4.1LG10g00230MELO3C007907Melon (DHL92) v3.5.1cpemeB060
Cp4.1LG10g00230CSPI06G31810Wild cucumber (PI 183967)cpecpiB080
Cp4.1LG10g00230Lsi01G005990Bottle gourd (USVL1VR-Ls)cpelsiB054
Cp4.1LG10g00230MELO3C007907.2Melon (DHL92) v3.6.1cpemedB080
Cp4.1LG10g00230CsaV3_6G047140Cucumber (Chinese Long) v3cpecucB0092
Cp4.1LG10g00230Bhi03G000637Wax gourdcpewgoB0097
Cp4.1LG10g00230Carg00590Silver-seed gourdcarcpeB0554
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG10g00230Silver-seed gourdcarcpeB0913
Cp4.1LG10g00230Silver-seed gourdcarcpeB1350
Cp4.1LG10g00230Cucumber (Chinese Long) v3cpecucB0061
Cp4.1LG10g00230Cucumber (Chinese Long) v3cpecucB0063
Cp4.1LG10g00230Cucumber (Chinese Long) v3cpecucB0071
Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpecpeB061
Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpecpeB066
Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpecpeB076
Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpecpeB091
Cp4.1LG10g00230Cucurbita pepo (Zucchini)cpecpeB096
Cp4.1LG10g00230Cucumber (Gy14) v1cgycpeB0033
Cp4.1LG10g00230Cucumber (Gy14) v1cgycpeB0876
Cp4.1LG10g00230Cucurbita maxima (Rimu)cmacpeB170
Cp4.1LG10g00230Cucurbita maxima (Rimu)cmacpeB557
Cp4.1LG10g00230Cucurbita maxima (Rimu)cmacpeB866
Cp4.1LG10g00230Cucurbita moschata (Rifu)cmocpeB419
Cp4.1LG10g00230Cucurbita moschata (Rifu)cmocpeB511
Cp4.1LG10g00230Cucurbita moschata (Rifu)cmocpeB806
Cp4.1LG10g00230Wild cucumber (PI 183967)cpecpiB053
Cp4.1LG10g00230Wild cucumber (PI 183967)cpecpiB054
Cp4.1LG10g00230Wild cucumber (PI 183967)cpecpiB061
Cp4.1LG10g00230Cucumber (Chinese Long) v2cpecuB059
Cp4.1LG10g00230Cucumber (Chinese Long) v2cpecuB060
Cp4.1LG10g00230Cucumber (Chinese Long) v2cpecuB065
Cp4.1LG10g00230Bottle gourd (USVL1VR-Ls)cpelsiB046
Cp4.1LG10g00230Bottle gourd (USVL1VR-Ls)cpelsiB065
Cp4.1LG10g00230Bottle gourd (USVL1VR-Ls)cpelsiB069
Cp4.1LG10g00230Watermelon (Charleston Gray)cpewcgB061
Cp4.1LG10g00230Melon (DHL92) v3.5.1cpemeB047
Cp4.1LG10g00230Melon (DHL92) v3.5.1cpemeB052
Cp4.1LG10g00230Cucumber (Gy14) v2cgybcpeB155
Cp4.1LG10g00230Cucumber (Gy14) v2cgybcpeB710
Cp4.1LG10g00230Melon (DHL92) v3.6.1cpemedB061
Cp4.1LG10g00230Melon (DHL92) v3.6.1cpemedB068