Lsi01G005150 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G005150
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr01 : 4205941 .. 4206426 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGCCATAGCACCAAGCGACCAAGAGAATCATCATCATTAACACCCGATGCAACAAACGATCAATCTCCGCCGCCGGAGACCGCTAACGTAAAGAGGCAGCACCTCCACGACGCCCAAGAATCTCCTCCTGGTAAATTATTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTCACCTCCTTTTTCAATCGAGCATCCACCGCTGATGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTGTCTGGGAAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGACACAAGCGCCGCCGCCGCCGTTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTCTGCTAAACCAACCGCTTCAACAAGGGAGTAGTGCGTTATAG

mRNA sequence

ATGGACCGCCATAGCACCAAGCGACCAAGAGAATCATCATCATTAACACCCGATGCAACAAACGATCAATCTCCGCCGCCGGAGACCGCTAACGTAAAGAGGCAGCACCTCCACGACGCCCAAGAATCTCCTCCTGGTAAATTATTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTCACCTCCTTTTTCAATCGAGCATCCACCGCTGATGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTGTCTGGGAAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGACACAAGCGCCGCCGCCGCCGTTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTCTGCTAAACCAACCGCTTCAACAAGGGAGTAGTGCGTTATAG

Coding sequence (CDS)

ATGGACCGCCATAGCACCAAGCGACCAAGAGAATCATCATCATTAACACCCGATGCAACAAACGATCAATCTCCGCCGCCGGAGACCGCTAACGTAAAGAGGCAGCACCTCCACGACGCCCAAGAATCTCCTCCTGGTAAATTATTTGATTTCGATCTGTCGTTCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTCACCTCCTTTTTCAATCGAGCATCCACCGCTGATGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTGTCTGGGAAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGACACAAGCGCCGCCGCCGCCGTTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTCTGCTAAACCAACCGCTTCAACAAGGGAGTAGTGCGTTATAG

Protein sequence

MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDAQESPPGKLFDFDLSFGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLPDPWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPLQQGSSAL

Homology

[Close]

BLAST of Lsi01G005150 vs. TrEMBL
Match: A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.5e-60
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLT--PDATNDQSPPPETANVKRQHLHD-AQESPPGKLFDFDL-SFG 60
           M+RH+TKRPRESSSL+  PD   DQS  PE ANVKRQH HD AQES PG  FDFDL SFG
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60

Query: 61  VFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTAD-ATPLTIGTAFTELSGKLLWCNL 120
           VFDFPWLKDGLIYSKS+DWKFEDVFFTS +N ASTAD ATPLTIGTAFTE         L
Sbjct: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEF--------L 120

Query: 121 PDPWEEDYETQAPPPP---LDGGEQAGEGMDCIWRSLLNQPLQQGSSAL 162
           PDPWE+DYE QAPPPP   LDGGEQ GE MDCIWRS+LNQPLQQGSSAL
Sbjct: 121 PDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Lsi01G005150 vs. TrEMBL
Match: M5WII2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.5e-06
Identity = 44/128 (34.38%), Postives = 58/128 (45.31%), Query Frame = 1


Query: 54  SFGVFDFPWLKDGLIYSKSEDW-KFEDVFFT---------SFFNRASTADATPLTIGTAF 113
           + GVFDFPWLKDG+I S+SE+W  FEDVF +         +F   ++      +    +F
Sbjct: 78  ALGVFDFPWLKDGII-SQSEEWINFEDVFSSPVLALDDTPTFTTSSNPGHGIGIDDQFSF 137

Query: 114 TELSGKL------------LWCNLP---DPWEEDYETQAPPPPLDGGEQAGEGMDCIWRS 157
           +  +G+             L  + P   D  EED          D      EG DCIW  
Sbjct: 138 SAAAGRCFYQTHDQSDHQELLLDFPPAKDKLEEDARRSPRDLNQDDDGLENEGADCIWTF 197

[Close]

BLAST of Lsi01G005150 vs. TrEMBL
Match: K7MAY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G122500 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.5e-06
Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDAQESPPGKLFDFD-LSFGVFD 60
           M+R   KR RE   +  +++ +        N+ ++  ++ +E    K +D+  L+ GVFD
Sbjct: 1   MERRKNKRAREDDGVEIESSFENY----NNNIAKKEKNEVEEKDCSKAWDYSHLTMGVFD 60

Query: 61  FPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLPD-- 120
           FPW+KDG+I    E   FED  ++S   + +   A+    G  F+E  G    C  P+  
Sbjct: 61  FPWMKDGVISKSYECLDFEDDSWSSLERQETLFKAS----GIDFSEEYG---LCETPEAS 120

Query: 121 ----PWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPL 155
                  +  E    P   +G E   E  DCIW  LLN+PL
Sbjct: 121 MAHIQEAKLVEDMWKPFESNGLELEAEDGDCIWSFLLNKPL 150

[Close]

BLAST of Lsi01G005150 vs. TrEMBL
Match: A0A0B2PYL6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012439 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 8.5e-06
Identity = 48/161 (29.81%), Postives = 75/161 (46.58%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDAQESPPGKLFDFD-LSFGVFD 60
           M+R   KR RE   +  +++ +        N+ ++  ++ +E    K +D+  L+ GVFD
Sbjct: 1   MERRKNKRAREDDGVEIESSFENY----NNNIAKKEKNEVEEKDCSKAWDYSHLTMGVFD 60

Query: 61  FPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLPD-- 120
           FPW+KDG+I    E   FED  ++S   + +   A+    G  F+E  G    C  P+  
Sbjct: 61  FPWMKDGVISKSYECLDFEDDSWSSLERQETLFKAS----GIDFSEEYG---LCETPEAS 120

Query: 121 ----PWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPL 155
                  +  E    P   +G E   E  DCIW  LLN+PL
Sbjct: 121 MAHIQEAKLVEDMWKPFESNGLELEAEDGDCIWSFLLNKPL 150

[Close]

BLAST of Lsi01G005150 vs. NCBI nr
Match: gi|700193811|gb|KGN49015.1| (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 239.2 bits (609), Expect = 5.0e-60
Identity = 130/169 (76.92%), Postives = 137/169 (81.07%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLT--PDATNDQSPPPETANVKRQHLHD-AQESPPGKLFDFDL-SFG 60
           M+RH+TKRPRESSSL+  PD   DQS  PE ANVKRQH HD AQES PG  FDFDL SFG
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60

Query: 61  VFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTAD-ATPLTIGTAFTELSGKLLWCNL 120
           VFDFPWLKDGLIYSKS+DWKFEDVFFTS +N ASTAD ATPLTIGTAFTE         L
Sbjct: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEF--------L 120

Query: 121 PDPWEEDYETQAPPPP---LDGGEQAGEGMDCIWRSLLNQPLQQGSSAL 162
           PDPWE+DYE QAPPPP   LDGGEQ GE MDCIWRS+LNQPLQQGSSAL
Sbjct: 121 PDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Lsi01G005150 vs. NCBI nr
Match: gi|1009111379|ref|XP_015900776.1| (PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba])

HSP 1 Score: 86.3 bits (212), Expect = 5.4e-14
Identity = 51/106 (48.11%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 52  DLSFGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFT-ELSGKL 111
           DL+ GVFDFPWLKDG++ SKSE+W+FEDVF +     +ST  ++ +T    F  E SG+ 
Sbjct: 57  DLAVGVFDFPWLKDGVV-SKSEEWRFEDVFSSPLDETSSTTTSSTITTSAGFEFEFSGQC 116

Query: 112 LWCNLPDPWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPLQQ 157
           L C  P       E     P  D  E+  E +DCIW SLLNQPLQQ
Sbjct: 117 L-CQSP-------EALLDFPEEDKFEET-ESVDCIWSSLLNQPLQQ 152

[Close]

BLAST of Lsi01G005150 vs. NCBI nr
Match: gi|719990508|ref|XP_010252978.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera])

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDA-QESPPGKLFDFDLSFGVFD 60
           M+R S KR R       D  +++    +    K++H+    ++S   K+ D    FGVFD
Sbjct: 1   MERDSKKRRR-------DDDDEEKTDWDVCMKKQEHVGVGFEDSDIFKVSDPFRPFGVFD 60

Query: 61  FPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLP--- 120
           FPWLKD L+  +SEDWKF+DVF       AS  D + +++G    +  G+ L C  P   
Sbjct: 61  FPWLKDNLVL-ESEDWKFDDVF------SASLGDVS-VSVGGG-VDFGGQCL-CQTPALV 120

Query: 121 -----DPWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPLQQGSS 160
                D  +E+        P +GG    +G DCIW S+L+QPL  G S
Sbjct: 121 EILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 145

[Close]

BLAST of Lsi01G005150 vs. NCBI nr
Match: gi|719990499|ref|XP_010252975.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDA-QESPPGKLFDFDLSFGVFD 60
           M+R S KR R       D  +++    +    K++H+    ++S   K+ D    FGVFD
Sbjct: 29  MERDSKKRRR-------DDDDEEKTDWDVCMKKQEHVGVGFEDSDIFKVSDPFRPFGVFD 88

Query: 61  FPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLP--- 120
           FPWLKD L+  +SEDWKF+DVF       AS  D + +++G    +  G+ L C  P   
Sbjct: 89  FPWLKDNLVL-ESEDWKFDDVF------SASLGDVS-VSVGGG-VDFGGQCL-CQTPALV 148

Query: 121 -----DPWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPLQQGSS 160
                D  +E+        P +GG    +G DCIW S+L+QPL  G S
Sbjct: 149 EILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 173

[Close]

BLAST of Lsi01G005150 vs. NCBI nr
Match: gi|719990502|ref|XP_010252976.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 67.0 bits (162), Expect = 3.4e-08
Identity = 58/168 (34.52%), Postives = 84/168 (50.00%), Query Frame = 1


Query: 1   MDRHSTKRPRESSSLTPDATNDQSPPPETANVKRQHLHDA-QESPPGKLFDFDLSFGVFD 60
           M+R S KR R       D  +++    +    K++H+    ++S   K+ D    FGVFD
Sbjct: 17  MERDSKKRRR-------DDDDEEKTDWDVCMKKQEHVGVGFEDSDIFKVSDPFRPFGVFD 76

Query: 61  FPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADATPLTIGTAFTELSGKLLWCNLP--- 120
           FPWLKD L+  +SEDWKF+DVF       AS  D + +++G    +  G+ L C  P   
Sbjct: 77  FPWLKDNLVL-ESEDWKFDDVF------SASLGDVS-VSVGGG-VDFGGQCL-CQTPALV 136

Query: 121 -----DPWEEDYETQAPPPPLDGGEQAGEGMDCIWRSLLNQPLQQGSS 160
                D  +E+        P +GG    +G DCIW S+L+QPL  G S
Sbjct: 137 EILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 161

The following BLAST results are available for this feature:

BLAST of Lsi01G005150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G005150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH39_CUCSA	3.5e-60	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1	[more]
M5WII2_PRUPE	8.5e-06	34.38	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1	[more]
K7MAY4_SOYBN	8.5e-06	29.81	Uncharacterized protein OS=Glycine max GN=GLYMA_15G122500 PE=4 SV=1	[more]
A0A0B2PYL6_GLYSO	8.5e-06	29.81	Uncharacterized protein OS=Glycine soja GN=glysoja_012439 PE=4 SV=1	[more]

BLAST of Lsi01G005150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi01G005150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193811\|gb\|KGN49015.1\|	5.0e-60	76.92	hypothetical protein Csa_6G510330 [Cucumis sativus]	[more]
gi\|1009111379\|ref\|XP_015900776.1\|	5.4e-14	48.11	PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba]	[more]
gi\|719990508\|ref\|XP_010252978.1\|	3.4e-08	34.52	PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera]	[more]
gi\|719990499\|ref\|XP_010252975.1\|	3.4e-08	34.52	PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera]	[more]
gi\|719990502\|ref\|XP_010252976.1\|	3.4e-08	34.52	PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G005150.1	Lsi01G005150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G005150	Csa6G510330	Cucumber (Chinese Long) v2	culsiB434
Lsi01G005150	CSPI06G32630	Wild cucumber (PI 183967)	cpilsiB439
Lsi01G005150	CmaCh03G006070	Cucurbita maxima (Rimu)	cmalsiB597
Lsi01G005150	CmaCh07G003710	Cucurbita maxima (Rimu)	cmalsiB786
Lsi01G005150	CmoCh03G006350	Cucurbita moschata (Rifu)	cmolsiB582
Lsi01G005150	CmoCh07G003650	Cucurbita moschata (Rifu)	cmolsiB774
Lsi01G005150	Cla014370	Watermelon (97103) v1	lsiwmB144
Lsi01G005150	MELO3C007992	Melon (DHL92) v3.5.1	lsimeB156
Lsi01G005150	ClCG01G021060	Watermelon (Charleston Gray)	lsiwcgB127
Lsi01G005150	MELO3C007992.2	Melon (DHL92) v3.6.1	lsimedB163
Lsi01G005150	Cla97C01G020640	Watermelon (97103) v2	lsiwmbB115
Lsi01G005150	Bhi03G000542	Wax gourd	lsiwgoB168
Lsi01G005150	Cp4.1LG19g08410	Cucurbita pepo (Zucchini)	cpelsiB396
Lsi01G005150	Cp4.1LG10g10200	Cucurbita pepo (Zucchini)	cpelsiB054
Lsi01G005150	CsaV3_6G048060	Cucumber (Chinese Long) v3	cuclsiB462

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G005150	Silver-seed gourd	carlsiB364
Lsi01G005150	Silver-seed gourd	carlsiB585
Lsi01G005150	Cucumber (Chinese Long) v3	cuclsiB017
Lsi01G005150	Cucumber (Gy14) v1	cgylsiB022
Lsi01G005150	Cucurbita maxima (Rimu)	cmalsiB517
Lsi01G005150	Cucurbita moschata (Rifu)	cmolsiB502
Lsi01G005150	Cucurbita pepo (Zucchini)	cpelsiB413
Lsi01G005150	Melon (DHL92) v3.5.1	lsimeB129
Lsi01G005150	Cucumber (Gy14) v2	cgyblsiB014
Lsi01G005150	Cucumber (Gy14) v2	cgyblsiB398