Cla014370 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla014370
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr1 : 30306839 .. 30307348 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCGCCATAACACCAAGCGACCAAGAGAATCATCGTCGTCATCATCATCACCGCCCGATGCAATATACGATCAATCTTCGCCGCCGGAGATCGCTAATGTAAAGAGGCAGCACCTCCACGACGGCAGCTACGACGCCCAAGAATCTCCTCCTGGTACATTATTTGATTTCGATCTGTCGTTCGGCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTCATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTTACCTCCTTTTTCAATCGAGCATCTACCGCCGATTCGACTCCGCTTACAATAGGAACGGCGTTTACAGAGTTGTCGGGGCAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGGCACAAGCGCCGCCGCCGCCGCTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

mRNA sequence

ATGGACCGCCATAACACCAAGCGACCAAGAGAATCATCGTCGTCATCATCATCACCGCCCGATGCAATATACGATCAATCTTCGCCGCCGGAGATCGCTAATGTAAAGAGGCAGCACCTCCACGACGGCAGCTACGACGCCCAAGAATCTCCTCCTGGTACATTATTTGATTTCGATCTGTCGTTCGGCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTCATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTTACCTCCTTTTTCAATCGAGCATCTACCGCCGATTCGACTCCGCTTACAATAGGAACGGCGTTTACAGAGTTGTCGGGGCAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGGCACAAGCGCCGCCGCCGCCGCTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGACCGCCATAACACCAAGCGACCAAGAGAATCATCGTCGTCATCATCATCACCGCCCGATGCAATATACGATCAATCTTCGCCGCCGGAGATCGCTAATGTAAAGAGGCAGCACCTCCACGACGGCAGCTACGACGCCCAAGAATCTCCTCCTGGTACATTATTTGATTTCGATCTGTCGTTCGGCGGCGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTCATTTATTCCAAATCCGAGGACTGGAAATTTGAGGACGTTTTCTTTACCTCCTTTTTCAATCGAGCATCTACCGCCGATTCGACTCCGCTTACAATAGGAACGGCGTTTACAGAGTTGTCGGGGCAATTGCTGTGGTGTAATCTGCCGGATCCTTGGGAGGAGGATTATGAGGCACAAGCGCCGCCGCCGCCGCTGGACGGCGGAGAGCAGGCAGGGGAGGGGATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Protein sequence

MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDAQESPPGTLFDFDLSFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADSTPLTIGTAFTELSGQLLWCNLPDPWEEDYEAQAPPPPLDGGEQAGEGMDCIWRSVLNQPLQQGSSAL

Homology

[Close]

BLAST of Cla014370 vs. TrEMBL
Match: A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 5.3e-67
Identity = 137/173 (79.19%), Postives = 143/173 (82.66%), Query Frame = 1


Query: 1   MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDAQESPPGTLFDFDL 60
           M+RHNTKRPRESSS SS PPD IYDQSS PEIANVKRQH HD   +AQES PGT FDFDL
Sbjct: 1   MERHNTKRPRESSSLSS-PPDGIYDQSSLPEIANVKRQHSHD---NAQESSPGTSFDFDL 60

Query: 61  SFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTAD-STPLTIGTAFTELSGQLL 120
              GVFDFPWLKDGLIYSKS+DWKFEDVFFTS +N ASTAD +TPLTIGTAFTE      
Sbjct: 61  LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEF----- 120

Query: 121 WCNLPDPWEEDYEAQAPPPP---LDGGEQAGEGMDCIWRSVLNQPLQQGSSAL 170
              LPDPWE+DYEAQAPPPP   LDGGEQ GE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 ---LPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Cla014370 vs. TrEMBL
Match: M5WII2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 60/191 (31.41%), Postives = 80/191 (41.88%), Query Frame = 1


Query: 4   HNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDAQESPPGTLFDFDLSFG 63
           HN   P  SSSSSSS     + ++    I N     L +   + ++S   T      S  
Sbjct: 16  HNNSSPSSSSSSSSSSEREKHVKTKDGPI-NYGILELKNDVLEYKDSSSSTSSCCKTSSE 75

Query: 64  -----GVFDFPWLKDGLIYSKSEDW-KFEDVFFT---------SFFNRASTADSTPLTIG 123
                GVFDFPWLKDG+I S+SE+W  FEDVF +         +F   ++      +   
Sbjct: 76  SHCALGVFDFPWLKDGII-SQSEEWINFEDVFSSPVLALDDTPTFTTSSNPGHGIGIDDQ 135

Query: 124 TAFTELSG------------QLLWCNLP---DPWEEDYEAQAPPPPLDGGEQAGEGMDCI 165
            +F+  +G            Q L  + P   D  EED          D      EG DCI
Sbjct: 136 FSFSAAAGRCFYQTHDQSDHQELLLDFPPAKDKLEEDARRSPRDLNQDDDGLENEGADCI 195

[Close]

BLAST of Cla014370 vs. TrEMBL
Match: A0A059CF65_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.3e-06
Identity = 46/116 (39.66%), Postives = 60/116 (51.72%), Query Frame = 1


Query: 56  FDFDLSFGGVFDFPWLK--DGLIYSKSEDW--KFEDVFFTSFFNRASTADSTPLTIGTAF 115
           +D+ +S  GVFDFPWL+  DG+I+   ED   K ED F    F+ + TAD      G  F
Sbjct: 4   WDYCMSSLGVFDFPWLREGDGMIFGSEEDGESKVEDAFP---FSPSFTADH-----GMEF 63

Query: 116 TELSGQLLWCNLPDPWEEDYEAQAPPPPL--DGGEQAGEGMDCIWRSVLNQPLQQG 166
            E         L D  E+D+   +P   L    G    EG+DCIW SVL+QPL+ G
Sbjct: 64  CEPLSCQNSALLLDSLEDDHGMLSPGQQLLTAQGSDDLEGLDCIWSSVLDQPLEGG 111

[Close]

BLAST of Cla014370 vs. NCBI nr
Match: gi|700193811|gb|KGN49015.1| (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 7.6e-67
Identity = 137/173 (79.19%), Postives = 143/173 (82.66%), Query Frame = 1


Query: 1   MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDAQESPPGTLFDFDL 60
           M+RHNTKRPRESSS SS PPD IYDQSS PEIANVKRQH HD   +AQES PGT FDFDL
Sbjct: 1   MERHNTKRPRESSSLSS-PPDGIYDQSSLPEIANVKRQHSHD---NAQESSPGTSFDFDL 60

Query: 61  SFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTAD-STPLTIGTAFTELSGQLL 120
              GVFDFPWLKDGLIYSKS+DWKFEDVFFTS +N ASTAD +TPLTIGTAFTE      
Sbjct: 61  LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEF----- 120

Query: 121 WCNLPDPWEEDYEAQAPPPP---LDGGEQAGEGMDCIWRSVLNQPLQQGSSAL 170
              LPDPWE+DYEAQAPPPP   LDGGEQ GE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 ---LPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Cla014370 vs. NCBI nr
Match: gi|1009111379|ref|XP_015900776.1| (PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba])

HSP 1 Score: 84.7 bits (208), Expect = 1.7e-13
Identity = 51/102 (50.00%), Postives = 62/102 (60.78%), Query Frame = 1


Query: 64  GVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADSTPLTIGTAFT-ELSGQLLWCN 123
           GVFDFPWLKDG++ SKSE+W+FEDVF +     +ST  S+ +T    F  E SGQ L C 
Sbjct: 61  GVFDFPWLKDGVV-SKSEEWRFEDVFSSPLDETSSTTTSSTITTSAGFEFEFSGQCL-CQ 120

Query: 124 LPDPWEEDYEAQAPPPPLDGGEQAGEGMDCIWRSVLNQPLQQ 165
            P       EA    P  D  E+  E +DCIW S+LNQPLQQ
Sbjct: 121 SP-------EALLDFPEEDKFEET-ESVDCIWSSLLNQPLQQ 152

[Close]

BLAST of Cla014370 vs. NCBI nr
Match: gi|719990508|ref|XP_010252978.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 1


Query: 1   MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDA---QESPPGTLFD 60
           M+R + KR R+      +  D          +   K++H+  G  D+   + S P   F 
Sbjct: 1   MERDSKKRRRDDDDEEKTDWD----------VCMKKQEHVGVGFEDSDIFKVSDPFRPF- 60

Query: 61  FDLSFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADSTPLTIGTAFTELSGQ 120
                 GVFDFPWLKD L+  +SEDWKF+DVF  S            +++G    +  GQ
Sbjct: 61  ------GVFDFPWLKDNLVL-ESEDWKFDDVFSASL-------GDVSVSVGGG-VDFGGQ 120

Query: 121 LLWCNLP--------DPWEEDYEAQAPPPPLDGGEQAGEGMDCIWRSVLNQPLQQGSS 168
            L C  P        D  +E+        P +GG    +G DCIW SVL+QPL  G S
Sbjct: 121 CL-CQTPALVEILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 145

[Close]

BLAST of Cla014370 vs. NCBI nr
Match: gi|719990505|ref|XP_010252977.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 1


Query: 1   MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDA---QESPPGTLFD 60
           M+R + KR R+      +  D          +   K++H+  G  D+   + S P   F 
Sbjct: 8   MERDSKKRRRDDDDEEKTDWD----------VCMKKQEHVGVGFEDSDIFKVSDPFRPF- 67

Query: 61  FDLSFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADSTPLTIGTAFTELSGQ 120
                 GVFDFPWLKD L+  +SEDWKF+DVF  S            +++G    +  GQ
Sbjct: 68  ------GVFDFPWLKDNLVL-ESEDWKFDDVFSASL-------GDVSVSVGGG-VDFGGQ 127

Query: 121 LLWCNLP--------DPWEEDYEAQAPPPPLDGGEQAGEGMDCIWRSVLNQPLQQGSS 168
            L C  P        D  +E+        P +GG    +G DCIW SVL+QPL  G S
Sbjct: 128 CL-CQTPALVEILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 152

[Close]

BLAST of Cla014370 vs. NCBI nr
Match: gi|719990502|ref|XP_010252976.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 68.2 bits (165), Expect = 1.6e-08
Identity = 58/178 (32.58%), Postives = 80/178 (44.94%), Query Frame = 1


Query: 1   MDRHNTKRPRESSSSSSSPPDAIYDQSSPPEIANVKRQHLHDGSYDA---QESPPGTLFD 60
           M+R + KR R+      +  D          +   K++H+  G  D+   + S P   F 
Sbjct: 17  MERDSKKRRRDDDDEEKTDWD----------VCMKKQEHVGVGFEDSDIFKVSDPFRPF- 76

Query: 61  FDLSFGGVFDFPWLKDGLIYSKSEDWKFEDVFFTSFFNRASTADSTPLTIGTAFTELSGQ 120
                 GVFDFPWLKD L+  +SEDWKF+DVF  S            +++G    +  GQ
Sbjct: 77  ------GVFDFPWLKDNLVL-ESEDWKFDDVFSASL-------GDVSVSVGGG-VDFGGQ 136

Query: 121 LLWCNLP--------DPWEEDYEAQAPPPPLDGGEQAGEGMDCIWRSVLNQPLQQGSS 168
            L C  P        D  +E+        P +GG    +G DCIW SVL+QPL  G S
Sbjct: 137 CL-CQTPALVEILPGDTLDEESW------PCEGGMNDIDGGDCIWSSVLSQPLSTGFS 161

The following BLAST results are available for this feature:

BLAST of Cla014370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH39_CUCSA	5.3e-67	79.19	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1	[more]
M5WII2_PRUPE	1.8e-06	31.41	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1	[more]
A0A059CF65_EUCGR	2.3e-06	39.66	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1	[more]

BLAST of Cla014370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193811\|gb\|KGN49015.1\|	7.6e-67	79.19	hypothetical protein Csa_6G510330 [Cucumis sativus]	[more]
gi\|1009111379\|ref\|XP_015900776.1\|	1.7e-13	50.00	PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba]	[more]
gi\|719990508\|ref\|XP_010252978.1\|	1.6e-08	32.58	PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera]	[more]
gi\|719990505\|ref\|XP_010252977.1\|	1.6e-08	32.58	PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera]	[more]
gi\|719990502\|ref\|XP_010252976.1\|	1.6e-08	32.58	PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla014370	Cla014370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla014370	Cla97C01G020640	Watermelon (97103) v2	wmwmbB234
Cla014370	Csa6G510330	Cucumber (Chinese Long) v2	cuwmB500
Cla014370	MELO3C007992	Melon (DHL92) v3.5.1	mewmB570
Cla014370	ClCG01G021060	Watermelon (Charleston Gray)	wcgwmB141
Cla014370	CSPI06G32630	Wild cucumber (PI 183967)	cpiwmB519
Cla014370	CmaCh03G006070	Cucurbita maxima (Rimu)	cmawmB632
Cla014370	CmaCh07G003710	Cucurbita maxima (Rimu)	cmawmB826
Cla014370	CmoCh03G006350	Cucurbita moschata (Rifu)	cmowmB623
Cla014370	CmoCh07G003650	Cucurbita moschata (Rifu)	cmowmB816
Cla014370	Lsi01G005150	Bottle gourd (USVL1VR-Ls)	lsiwmB144
Cla014370	Cp4.1LG10g10200	Cucurbita pepo (Zucchini)	cpewmB073
Cla014370	Cp4.1LG19g08410	Cucurbita pepo (Zucchini)	cpewmB482
Cla014370	MELO3C007992.2	Melon (DHL92) v3.6.1	medwmB559
Cla014370	CsaV3_6G048060	Cucumber (Chinese Long) v3	cucwmB526
Cla014370	Bhi03G000542	Wax gourd	wgowmB432

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla014370	Cucumber (Gy14) v2	cgybwmB061
Cla014370	Cucumber (Gy14) v2	cgybwmB468
Cla014370	Silver-seed gourd	carwmB0407
Cla014370	Silver-seed gourd	carwmB0642
Cla014370	Cucumber (Chinese Long) v3	cucwmB064
Cla014370	Cucumber (Gy14) v1	cgywmB026
Cla014370	Melon (DHL92) v3.5.1	mewmB165