MELO3C007992.2 (gene) Melon (DHL92) v3.6.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C007992.2
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.6.1)
Description	Unknown protein
Location	chr08 : 6655954 .. 6656460 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

mRNA sequence

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Protein sequence

MERHNTKRPRESSSSPSPPPPPPDGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL

Homology

[Close]

BLAST of MELO3C007992.2 vs. NCBI nr
Match: KGN49015.1 (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 258.1 bits (658), Expect = 2.1e-65
Identity = 136/168 (80.95%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MERHNTKRPXXXXXXXXXXXXXXXGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFD 60
           MERHNTKRP               G+YDQSS PEIANVKRQHSHD  QE SSPGTSFDFD
Sbjct: 1   MERHNTKRP----RESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQE-SSPGTSFDFD 60

Query: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLP 120
           LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGA ST DIATPLTIGT AFTEFLP
Sbjct: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGA-STADIATPLTIGT-AFTEFLP 120

Query: 121 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL 169
           DPWEKDYEAQA        DGGEQGGE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 DPWEKDYEAQAXXXXXXXXDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of MELO3C007992.2 vs. NCBI nr
Match: XP_022977867.1 (uncharacterized protein LOC111478029 [Cucurbita maxima])

HSP 1 Score: 154.8 bits (390), Expect = 2.5e-34
Identity = 93/174 (53.45%), Postives = 108/174 (62.07%), Query Frame = 0


Query: 1   MERHNTKRPXXXXXXXXXXXXXXXGMYDQSSPPEIANVKRQHSHDA--DQEYSSPGTSFD 60
           MER +TKRP                  +QSS  EI N K+Q  H    D +   P T +D
Sbjct: 1   MERQSTKRP-------------RESSAEQSSLLEIGNGKKQRLHGGSDDAKEPLPRTFYD 60

Query: 61  FDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASS--TFDIATPLTIGTKAFT 120
           FD LSFGVFDFPWLK+ LIYS+S+DWK +DVFFTS YNG S+     I T L+ G   ++
Sbjct: 61  FD-LSFGVFDFPWLKESLIYSESEDWKLDDVFFTSFYNGLSTADATSIGTELSSGQLVWS 120

Query: 121 EFLPDPWEKDYEAQALPQPPPFLD--GGEQGGEGMDCIWRSVLNQPLQQGSSAL 169
             LPDPWE +YEAQ    PP  LD  GG Q GEGMDCIW S+LNQPLQQGS AL
Sbjct: 121 N-LPDPWEAEYEAQV---PPTTLDDGGGGQAGEGMDCIWSSLLNQPLQQGSRAL 156

[Close]

BLAST of MELO3C007992.2 vs. NCBI nr
Match: XP_022132712.1 (uncharacterized protein LOC111005508, partial [Momordica charantia])

HSP 1 Score: 93.6 bits (231), Expect = 6.9e-16
Identity = 70/145 (48.28%), Postives = 81/145 (55.86%), Query Frame = 0


Query: 1   MERHNTKRPXXXXXXXXXXXXXXXGMYDQ--SSPPEIANVKRQHSHDADQEYSSPGTSFD 60
           M+RHNTKR                  Y++  SSPPEI NVK+QH+ D      + G S D
Sbjct: 1   MDRHNTKRARESLSASAASSDDAVS-YERSYSSPPEIGNVKKQHT-DGGGGQGATGRSSD 60

Query: 61  FDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEF 120
            D     VFDFPWLKD LI SKS+DWKFEDVFFTS+ +  +ST D    LTIGT AFTE 
Sbjct: 61  LD-----VFDFPWLKDSLI-SKSEDWKFEDVFFTSLDSNGASTAD--DTLTIGT-AFTEL 120

Query: 121 -----------LPDPWEKDYEAQAL 133
                      LPDP    YEA+AL
Sbjct: 121 SGQLLWCDPGSLPDP----YEAEAL 130

[Close]

BLAST of MELO3C007992.2 vs. NCBI nr
Match: XP_018828038.1 (PREDICTED: uncharacterized protein LOC108996550 [Juglans regia])

HSP 1 Score: 79.3 bits (194), Expect = 1.3e-11
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 62  LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLT----IGTKAFTE 121
           L  GVFDFPWLKDG+I SKS+DW+FED F +S+    +ST   A   +      T     
Sbjct: 58  LDVGVFDFPWLKDGMI-SKSEDWRFEDAFSSSLIPHDNSTTTAAIEFSGQCLCRTPEEVP 117

Query: 122 FLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQG 165
           +LP+    D    A+P+     DG E   EG+DCIW S+L+QPLQQG
Sbjct: 118 YLPENKFDDSLCWAVPEG----DGLET--EGLDCIWSSLLSQPLQQG 157

[Close]

BLAST of MELO3C007992.2 vs. NCBI nr
Match: XP_015900776.1 (uncharacterized protein LOC107433898 [Ziziphus jujuba] >XP_015900785.1 uncharacterized protein LOC107433898 [Ziziphus jujuba] >XP_024934831.1 uncharacterized protein LOC107433898 [Ziziphus jujuba])

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-10
Identity = 48/122 (39.34%), Postives = 69/122 (56.56%), Query Frame = 0


Query: 47  DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIAT 106
           D++  +  TS + D L+ GVFDFPWLKDG++ SKS++W+FEDVF + +   +S+      
Sbjct: 44  DEDDHNKRTSEESD-LAVGVFDFPWLKDGVV-SKSEEWRFEDVFSSPLDETSSTXXXXXX 103

Query: 107 PLTIGTKAFTEFLPDPWEKDYEAQALPQ-PPPFLDGGEQG----GEGMDCIWRSVLNQPL 164
             + G           +E ++  Q L Q P   LD  E+      E +DCIW S+LNQPL
Sbjct: 104 XXSAG-----------FEFEFSGQCLCQSPEALLDFPEEDKFEETESVDCIWSSLLNQPL 152

[Close]

BLAST of MELO3C007992.2 vs. TrEMBL
Match: tr|A0A0A0KH39|A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 258.1 bits (658), Expect = 1.4e-65
Identity = 136/168 (80.95%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MERHNTKRPXXXXXXXXXXXXXXXGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFD 60
           MERHNTKRP               G+YDQSS PEIANVKRQHSHD  QE SSPGTSFDFD
Sbjct: 1   MERHNTKRP----RESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQE-SSPGTSFDFD 60

Query: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLP 120
           LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGA ST DIATPLTIGT AFTEFLP
Sbjct: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGA-STADIATPLTIGT-AFTEFLP 120

Query: 121 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL 169
           DPWEKDYEAQA        DGGEQGGE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 DPWEKDYEAQAXXXXXXXXDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of MELO3C007992.2 vs. TrEMBL
Match: tr|A0A2I4F8Q8|A0A2I4F8Q8_9ROSI (uncharacterized protein LOC108996550 OS=Juglans regia OX=51240 GN=LOC108996550 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 8.9e-12
Identity = 49/107 (45.79%), Postives = 63/107 (58.88%), Query Frame = 0


Query: 62  LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLT----IGTKAFTE 121
           L  GVFDFPWLKDG+I SKS+DW+FED F +S+    +ST   A   +      T     
Sbjct: 58  LDVGVFDFPWLKDGMI-SKSEDWRFEDAFSSSLIPHDNSTTTAAIEFSGQCLCRTPEEVP 117

Query: 122 FLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQG 165
           +LP+    D    A+P+     DG E   EG+DCIW S+L+QPLQQG
Sbjct: 118 YLPENKFDDSLCWAVPEG----DGLET--EGLDCIWSSLLSQPLQQG 157

[Close]

BLAST of MELO3C007992.2 vs. TrEMBL
Match: tr|A0A2P4KLA7|A0A2P4KLA7_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_30529 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.4e-09
Identity = 49/128 (38.28%), Postives = 69/128 (53.91%), Query Frame = 0


Query: 44  HDADQEYSSPGTSFDFDL-LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST- 103
           +D + +  S  TS D  L L  GVFDFPWLKDG+I SKS+DWK ED F +S+Y+ +S+  
Sbjct: 39  NDVNDDKDSEKTSCDSSLALDEGVFDFPWLKDGMI-SKSEDWKLEDTFSSSLYDTSSTNE 98

Query: 104 -----FDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSV 163
                F     L    +      PD  E+ ++   L +P           +G+ CIW S+
Sbjct: 99  AGIDEFPAGQCLCQTPEPALLNKPDDHEEKFD-DNLRRP--------LEDDGLGCIWTSL 156

Query: 164 LNQPLQQG 165
           L++PLQQG
Sbjct: 159 LSEPLQQG 156

[Close]

BLAST of MELO3C007992.2 vs. TrEMBL
Match: tr|A0A1U7ZVE6|A0A1U7ZVE6_NELNU (uncharacterized protein LOC109113865 isoform X2 OS=Nelumbo nucifera OX=4432 GN=LOC109113865 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 64  FGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST---FDIATPLTIGTKAFTEFLP 123
           FGVFDFPWLKD L+  +S+DWKF+DVF  S+ + + S     D        T A  E LP
Sbjct: 49  FGVFDFPWLKDNLVL-ESEDWKFDDVFSASLGDVSVSVGGGVDFGGQCLCQTPALVEILP 108

Query: 124 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSS 167
                      L +     +GG    +G DCIW SVL+QPL  G S
Sbjct: 109 --------GDTLDEESWPCEGGMNDIDGGDCIWSSVLSQPLSTGFS 145

[Close]

BLAST of MELO3C007992.2 vs. TrEMBL
Match: tr|A0A1U7ZIU2|A0A1U7ZIU2_NELNU (uncharacterized protein LOC109113865 isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC109113865 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 3.2e-09
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 0


Query: 64  FGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST---FDIATPLTIGTKAFTEFLP 123
           FGVFDFPWLKD L+  +S+DWKF+DVF  S+ + + S     D        T A  E LP
Sbjct: 56  FGVFDFPWLKDNLVL-ESEDWKFDDVFSASLGDVSVSVGGGVDFGGQCLCQTPALVEILP 115

Query: 124 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSS 167
                      L +     +GG    +G DCIW SVL+QPL  G S
Sbjct: 116 --------GDTLDEESWPCEGGMNDIDGGDCIWSSVLSQPLSTGFS 152

The following BLAST results are available for this feature:

BLAST of MELO3C007992.2 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN49015.1	2.1e-65	80.95	hypothetical protein Csa_6G510330 [Cucumis sativus]	[more]
XP_022977867.1	2.5e-34	53.45	uncharacterized protein LOC111478029 [Cucurbita maxima]	[more]
XP_022132712.1	6.9e-16	48.28	uncharacterized protein LOC111005508, partial [Momordica charantia]	[more]
XP_018828038.1	1.3e-11	45.79	PREDICTED: uncharacterized protein LOC108996550 [Juglans regia]	[more]
XP_015900776.1	4.3e-10	39.34	uncharacterized protein LOC107433898 [Ziziphus jujuba] >XP_015900785.1 uncharact...	[more]

BLAST of MELO3C007992.2 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of MELO3C007992.2 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of MELO3C007992.2 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KH39\|A0A0A0KH39_CUCSA	1.4e-65	80.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G510330 PE=4 SV=1	[more]
tr\|A0A2I4F8Q8\|A0A2I4F8Q8_9ROSI	8.9e-12	45.79	uncharacterized protein LOC108996550 OS=Juglans regia OX=51240 GN=LOC108996550 P...	[more]
tr\|A0A2P4KLA7\|A0A2P4KLA7_QUESU	2.4e-09	38.28	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_30529 PE=4 SV=1	[more]
tr\|A0A1U7ZVE6\|A0A1U7ZVE6_NELNU	3.2e-09	41.51	uncharacterized protein LOC109113865 isoform X2 OS=Nelumbo nucifera OX=4432 GN=L...	[more]
tr\|A0A1U7ZIU2\|A0A1U7ZIU2_NELNU	3.2e-09	41.51	uncharacterized protein LOC109113865 isoform X1 OS=Nelumbo nucifera OX=4432 GN=L...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C007992.2.1	MELO3C007992.2.1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon v3.6.1
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 13..28

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C007992.2	Csa6G510330	Cucumber (Chinese Long) v2	cumedB483
MELO3C007992.2	CSPI06G32630	Wild cucumber (PI 183967)	cpimedB493
MELO3C007992.2	CmaCh03G006070	Cucurbita maxima (Rimu)	cmamedB703
MELO3C007992.2	CmaCh07G003710	Cucurbita maxima (Rimu)	cmamedB907
MELO3C007992.2	CmoCh07G003650	Cucurbita moschata (Rifu)	cmomedB896
MELO3C007992.2	CmoCh03G006350	Cucurbita moschata (Rifu)	cmomedB694
MELO3C007992.2	Lsi01G005150	Bottle gourd (USVL1VR-Ls)	lsimedB163
MELO3C007992.2	Cp4.1LG19g08410	Cucurbita pepo (Zucchini)	cpemedB531
MELO3C007992.2	Cp4.1LG10g10200	Cucurbita pepo (Zucchini)	cpemedB080
MELO3C007992.2	Cla014370	Watermelon (97103) v1	medwmB559
MELO3C007992.2	ClCG01G021060	Watermelon (Charleston Gray)	medwcgB509
MELO3C007992.2	Cla97C01G020640	Watermelon (97103) v2	medwmbB505
MELO3C007992.2	Bhi03G000542	Wax gourd	medwgoB658
MELO3C007992.2	CsaV3_6G048060	Cucumber (Chinese Long) v3	cucmedB505

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C007992.2	Cucumber (Gy14) v2	cgybmedB440
MELO3C007992.2	Cucumber (Gy14) v1	cgymedB024
MELO3C007992.2	Silver-seed gourd	carmedB0418
MELO3C007992.2	Silver-seed gourd	carmedB0653