Csa6G510330 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G510330
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 26237742 .. 26238235 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTCAATGGAACGCCATAACACAAAGCGACCACGAGAATCATCGTCGTTGTCGTCACCACCCGATGGAATATACGATCAATCTTCGTTGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATAATGCTCAAGAATCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGGGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCCACCGCCGATATTGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCCGCCGCCGCCTCCGCCGTCGTTGGACGGCGGAGAGCAGGGAGGGGAGGCAATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

mRNA sequence

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCGTCGTTGTCGTCACCACCCGATGGAATATACGATCAATCTTCGTTGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATAATGCTCAAGAATCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGGGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCCACCGCCGATATTGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCCGCCGCCGCCTCCGCCGTCGTTGGACGGCGGAGAGCAGGGAGGGGAGGCAATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCGTCGTTGTCGTCACCACCCGATGGAATATACGATCAATCTTCGTTGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATAATGCTCAAGAATCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGGGTCTTCGATTTCCCCTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCCACCGCCGATATTGCTACTCCGCTTACAATTGGAACGGCGTTTACAGAGTTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCCGCCGCCGCCTCCGCCGTCGTTGGACGGCGGAGAGCAGGGAGGGGAGGCAATGGATTGTATCTGGAGGTCTGTGCTAAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Protein sequence

MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL*

Homology

[Close]

BLAST of Csa6G510330 vs. TrEMBL
Match: A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-90
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY 120
           VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY
Sbjct: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY 120

Query: 121 EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 162
           EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL
Sbjct: 121 EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Csa6G510330 vs. TrEMBL
Match: M5WII2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.0e-06
Identity = 61/193 (31.61%), Postives = 79/193 (40.93%), Query Frame = 1


Query: 2   ERHNTKRPRESSSLSSPP---------DGIYDQSSLPEIANVKRQHSHDNAQESSPGTSF 61
           E HN   P  SSS SS           DG  +   L E+ N   ++   ++  SS   + 
Sbjct: 14  EGHNNSSPSSSSSSSSSSEREKHVKTKDGPINYGIL-ELKNDVLEYKDSSSSTSSCCKTS 73

Query: 62  DFDLLSFGVFDFPWLKDGLIYSKSDDW-KFEDVF------------FTSVYNGASTADIA 121
                + GVFDFPWLKDG+I S+S++W  FEDVF            FT+  N      I 
Sbjct: 74  SESHCALGVFDFPWLKDGII-SQSEEWINFEDVFSSPVLALDDTPTFTTSSNPGHGIGID 133

Query: 122 TPLTIGTA-------------FTEFLPD-PWEKDYEAQAPPPPPPSLDGGEQG--GEAMD 157
              +   A               E L D P  KD   +     P  L+  + G   E  D
Sbjct: 134 DQFSFSAAAGRCFYQTHDQSDHQELLLDFPPAKDKLEEDARRSPRDLNQDDDGLENEGAD 193

[Close]

BLAST of Csa6G510330 vs. TrEMBL
Match: A0A0B2PYL6_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012439 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 50/168 (29.76%), Postives = 71/168 (42.26%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MER   KR RE        DG+  +SS     N   +   +  +E     ++D+  L+ G
Sbjct: 1   MERRKNKRARED-------DGVEIESSFENYNNNIAKKEKNEVEEKDCSKAWDYSHLTMG 60

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYN-----GASTADIA-------TPLTIGTAF 120
           VFDFPW+KDG+I    +   FED  ++S+        AS  D +       TP       
Sbjct: 61  VFDFPWMKDGVISKSYECLDFEDDSWSSLERQETLFKASGIDFSEEYGLCETPEASMAHI 120

Query: 121 TE--FLPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPL 155
            E   + D W+           P   +G E   E  DCIW  +LN+PL
Sbjct: 121 QEAKLVEDMWK-----------PFESNGLELEAEDGDCIWSFLLNKPL 150

[Close]

BLAST of Csa6G510330 vs. TrEMBL
Match: K7MAY4_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_15G122500 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 2.9e-06
Identity = 50/168 (29.76%), Postives = 71/168 (42.26%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MER   KR RE        DG+  +SS     N   +   +  +E     ++D+  L+ G
Sbjct: 1   MERRKNKRARED-------DGVEIESSFENYNNNIAKKEKNEVEEKDCSKAWDYSHLTMG 60

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYN-----GASTADIA-------TPLTIGTAF 120
           VFDFPW+KDG+I    +   FED  ++S+        AS  D +       TP       
Sbjct: 61  VFDFPWMKDGVISKSYECLDFEDDSWSSLERQETLFKASGIDFSEEYGLCETPEASMAHI 120

Query: 121 TE--FLPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPL 155
            E   + D W+           P   +G E   E  DCIW  +LN+PL
Sbjct: 121 QEAKLVEDMWK-----------PFESNGLELEAEDGDCIWSFLLNKPL 150

[Close]

BLAST of Csa6G510330 vs. TrEMBL
Match: A0A059CF65_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.8e-06
Identity = 39/111 (35.14%), Postives = 58/111 (52.25%), Query Frame = 1


Query: 52  FDFDLLSFGVFDFPWLK--DGLIYSKSDDW--KFEDVF-FTSVYNGASTADIATPLTIGT 111
           +D+ + S GVFDFPWL+  DG+I+   +D   K ED F F+  +      +   PL+   
Sbjct: 4   WDYCMSSLGVFDFPWLREGDGMIFGSEEDGESKVEDAFPFSPSFTADHGMEFCEPLSCQN 63

Query: 112 AFTEFLPDPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQG 158
           +    L D  E D+   +P     +  G +   E +DCIW SVL+QPL+ G
Sbjct: 64  S--ALLLDSLEDDHGMLSPGQQLLTAQGSDDL-EGLDCIWSSVLDQPLEGG 111

[Close]

BLAST of Csa6G510330 vs. NCBI nr
Match: gi|700193811|gb|KGN49015.1| (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 339.7 bits (870), Expect = 2.7e-90
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG
Sbjct: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY 120
           VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY
Sbjct: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDY 120

Query: 121 EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 162
           EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL
Sbjct: 121 EAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]

BLAST of Csa6G510330 vs. NCBI nr
Match: gi|1009111379|ref|XP_015900776.1| (PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba])

HSP 1 Score: 73.2 bits (178), Expect = 4.8e-10
Identity = 43/100 (43.00%), Postives = 58/100 (58.00%), Query Frame = 1


Query: 57  LSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPW 116
           L+ GVFDFPWLKDG++ SKS++W+FEDVF + +   +ST   +T  T      EF     
Sbjct: 58  LAVGVFDFPWLKDGVV-SKSEEWRFEDVFSSPLDETSSTTTSSTITTSAGFEFEFSGQCL 117

Query: 117 EKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQ 157
            +  EA    P     +  E    ++DCIW S+LNQPLQQ
Sbjct: 118 CQSPEALLDFPEEDKFEETE----SVDCIWSSLLNQPLQQ 152

[Close]

BLAST of Csa6G510330 vs. NCBI nr
Match: gi|719990499|ref|XP_010252975.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 54/166 (32.53%), Postives = 76/166 (45.78%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MER + KR R+            ++ +  ++   K++H     ++S      D     FG
Sbjct: 29  MERDSKKRRRDDDD---------EEKTDWDVCMKKQEHVGVGFEDSDIFKVSD-PFRPFG 88

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIG-------TAFTEFLP 120
           VFDFPWLKD L+  +S+DWKF+DVF  S+  G  +  +   +  G        A  E LP
Sbjct: 89  VFDFPWLKDNLVL-ESEDWKFDDVFSASL--GDVSVSVGGGVDFGGQCLCQTPALVEILP 148

Query: 121 DPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSS 160
                D E+         +DGG       DCIW SVL+QPL  G S
Sbjct: 149 GD-TLDEESWPCEGGMNDIDGG-------DCIWSSVLSQPLSTGFS 173

[Close]

BLAST of Csa6G510330 vs. NCBI nr
Match: gi|719990508|ref|XP_010252978.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera])

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 54/166 (32.53%), Postives = 76/166 (45.78%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MER + KR R+            ++ +  ++   K++H     ++S      D     FG
Sbjct: 1   MERDSKKRRRDDDD---------EEKTDWDVCMKKQEHVGVGFEDSDIFKVSD-PFRPFG 60

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIG-------TAFTEFLP 120
           VFDFPWLKD L+  +S+DWKF+DVF  S+  G  +  +   +  G        A  E LP
Sbjct: 61  VFDFPWLKDNLVL-ESEDWKFDDVFSASL--GDVSVSVGGGVDFGGQCLCQTPALVEILP 120

Query: 121 DPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSS 160
                D E+         +DGG       DCIW SVL+QPL  G S
Sbjct: 121 GD-TLDEESWPCEGGMNDIDGG-------DCIWSSVLSQPLSTGFS 145

[Close]

BLAST of Csa6G510330 vs. NCBI nr
Match: gi|719990505|ref|XP_010252977.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 65.9 bits (159), Expect = 7.6e-08
Identity = 54/166 (32.53%), Postives = 76/166 (45.78%), Query Frame = 1


Query: 1   MERHNTKRPRESSSLSSPPDGIYDQSSLPEIANVKRQHSHDNAQESSPGTSFDFDLLSFG 60
           MER + KR R+            ++ +  ++   K++H     ++S      D     FG
Sbjct: 8   MERDSKKRRRDDDD---------EEKTDWDVCMKKQEHVGVGFEDSDIFKVSD-PFRPFG 67

Query: 61  VFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIG-------TAFTEFLP 120
           VFDFPWLKD L+  +S+DWKF+DVF  S+  G  +  +   +  G        A  E LP
Sbjct: 68  VFDFPWLKDNLVL-ESEDWKFDDVFSASL--GDVSVSVGGGVDFGGQCLCQTPALVEILP 127

Query: 121 DPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSS 160
                D E+         +DGG       DCIW SVL+QPL  G S
Sbjct: 128 GD-TLDEESWPCEGGMNDIDGG-------DCIWSSVLSQPLSTGFS 152

The following BLAST results are available for this feature:

BLAST of Csa6G510330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH39_CUCSA	1.9e-90	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1	[more]
M5WII2_PRUPE	1.0e-06	31.61	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1	[more]
A0A0B2PYL6_GLYSO	2.9e-06	29.76	Uncharacterized protein OS=Glycine soja GN=glysoja_012439 PE=4 SV=1	[more]
K7MAY4_SOYBN	2.9e-06	29.76	Uncharacterized protein OS=Glycine max GN=GLYMA_15G122500 PE=4 SV=1	[more]
A0A059CF65_EUCGR	3.8e-06	35.14	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1	[more]

BLAST of Csa6G510330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193811\|gb\|KGN49015.1\|	2.7e-90	100.00	hypothetical protein Csa_6G510330 [Cucumis sativus]	[more]
gi\|1009111379\|ref\|XP_015900776.1\|	4.8e-10	43.00	PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba]	[more]
gi\|719990499\|ref\|XP_010252975.1\|	7.6e-08	32.53	PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera]	[more]
gi\|719990508\|ref\|XP_010252978.1\|	7.6e-08	32.53	PREDICTED: uncharacterized protein LOC104594382 isoform X4 [Nelumbo nucifera]	[more]
gi\|719990505\|ref\|XP_010252977.1\|	7.6e-08	32.53	PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G510330.1	Csa6G510330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G510330	Cla014370	Watermelon (97103) v1	cuwmB500
Csa6G510330	MELO3C007992	Melon (DHL92) v3.5.1	cumeB503
Csa6G510330	ClCG01G021060	Watermelon (Charleston Gray)	cuwcgB432
Csa6G510330	Lsi01G005150	Bottle gourd (USVL1VR-Ls)	culsiB434
Csa6G510330	MELO3C007992.2	Melon (DHL92) v3.6.1	cumedB483
Csa6G510330	Cla97C01G020640	Watermelon (97103) v2	cuwmbB412
Csa6G510330	Bhi03G000542	Wax gourd	cuwgoB628
Csa6G510330	CSPI06G32630	Wild cucumber (PI 183967)	cpicuB313
Csa6G510330	CmaCh03G006070	Cucurbita maxima (Rimu)	cmacuB681
Csa6G510330	CmaCh07G003710	Cucurbita maxima (Rimu)	cmacuB877
Csa6G510330	CmoCh07G003650	Cucurbita moschata (Rifu)	cmocuB865
Csa6G510330	CmoCh03G006350	Cucurbita moschata (Rifu)	cmocuB670
Csa6G510330	Cp4.1LG19g08410	Cucurbita pepo (Zucchini)	cpecuB503
Csa6G510330	Cp4.1LG10g10200	Cucurbita pepo (Zucchini)	cpecuB085

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G510330	Cucumber (Gy14) v2	cgybcuB045
Csa6G510330	Cucumber (Gy14) v2	cgybcuB281
Csa6G510330	Silver-seed gourd	carcuB0441
Csa6G510330	Silver-seed gourd	carcuB0663
Csa6G510330	Cucumber (Chinese Long) v2	cucuB042
Csa6G510330	Cucumber (Gy14) v1	cgycuB027