Cp4.1LG19g08410 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG19g08410
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG19 : 6610336 .. 6611914 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGGTAGTGTATACACTTTATTATTGAATATTTCCCATATTATTAAATAAAATATTATTTAATTGTATAGGTCCAACTCTAGTACTCATTTCTTTAATAGAATATTTCACACGTCCTTTAATAATATATTATTTTACTTACGCGGTCTACACCCAATTCTCCACAATGATATGATGATATTGTCCACGAGCATAAGCTCTCATGGATTTGTTTTGGGTTTTCCAAAATGTCTCATACCAATGTAGATAGTATTCCTCCCTTATAAACCCATGATCTTCCACTAAATTAACGGATGTGGGACTCACTCCTAATAATCCTCAACAAAGATGACTGTTATAAATGGTAATCCTCAACAAAGACTGGCCCTCGAGAGAGTGGATTGAGAGATCCCACATCGGTTGGAGAGAGTAACGACATACATTCTTACTACGCATTTTAAAACTTTGAGGAGAAGTTTGAAAGGGAAAAATCAAAGAAAACAATATCGGCTAGCGATGGACTTGAACTCTTACGAAATGAGTGATTAAGATGACATCTAAATGAGAGTGATTTTAAGAATACGAAAGTCGAGAGAGGCTAAGACTCAATCATGTAAACTCCAAAATTAAGTGTATTTTATATTATATATTTTCTCGAAAATTTTCTTAAGGAGCGAGAATGAAAATGAGAATGAAAATAAAATATGCTAAAAAGACTGGTGTTGATTTGTAGGGATAATTTTTAGTTTTAAAAATAATTAAAATAAAATATGTGATGGGGGATGGAAGAAAATGTTAGGGCAGTTAGGTTAAAATTTGTATAGGAAACAAATGAAATGAAGAGAGGGTGGTGAAAAGAGAACGTGAAAAGTGGAACGAACCTTGAACCTCGACCTCATCTAACATGTTGGGTGAATGATGCGTGCTGAGAGTTGCAAACGCCAATTGCTCACAAATTGCGTGACCCAATTTCCAAAACCTCCAATTTCCATTTCCCTAATTTCTTCATCAATCTGCCTCTCAAATCTATTTCTTCGTCTTCTTCTTCCCCTGATTTCATTCTTAATCTTCTACTAATCACTTTCCGATCGAAAATGGACCGCCGTAACACCAAGCGACCAAGAGAATCGTCGTTGTCGTCGTCGTCGTCGTCGTCCTCATCATCAGCCGGTGTAAGAAACGAGCAATCATCGCAGCCGGAAATCGGAAACGGAGAGAAGCGGCAACACGTCGAAGGATTTGGAAGGTTGTTTGATTTGGATCTGTCATTCGGCGTGTTTGATTTCCCCTGGTTGAAGGACAGCCTGATTTACTCCAAATACGAGGACTGGAAAGTTGAGGACGTTTTCTTCACGTCCTTCGATGGAGTATCCACTACCGCCGATATTGCGCTTACGGAGTGGTCCGAGCAATTGGTGTGGTGTAATCTACCAGATCCTTGGGAGGAGGAGTATGAGGCACATGTGGCACCGGCGACGGCGACGGCGACGGCGACGGCGGTGGAGGACGGGGAAGGACCGGCCGGGGAGGGTATGGATTGTGTTTGGAATTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGTAGCGCGTTGTAG

mRNA sequence

ATGGCGGACAGCCTGATTTACTCCAAATACGAGGACTGGAAAGTTGAGGACGTTTTCTTCACGTCCTTCGATGGAGTATCCACTACCGCCGATATTGCGCTTACGGAGTGGTCCGAGCAATTGGTGTGGTGTAATCTACCAGATCCTTGGGAGGAGGAGTATGAGGCACATGTGGCACCGGCGACGGCGACGGCGACGGCGACGGCGGTGGAGGACGGGGAAGGACCGGCCGGGGAGGGTATGGATTGTGTTTGGAATTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGTAGCGCGTTGTAG

Coding sequence (CDS)

ATGGCGGACAGCCTGATTTACTCCAAATACGAGGACTGGAAAGTTGAGGACGTTTTCTTCACGTCCTTCGATGGAGTATCCACTACCGCCGATATTGCGCTTACGGAGTGGTCCGAGCAATTGGTGTGGTGTAATCTACCAGATCCTTGGGAGGAGGAGTATGAGGCACATGTGGCACCGGCGACGGCGACGGCGACGGCGACGGCGGTGGAGGACGGGGAAGGACCGGCCGGGGAGGGTATGGATTGTGTTTGGAATTCTCTGCTAAATCAACCGCTTCAACAAGGGAGTAGTAGCGCGTTGTAG

Protein sequence

MADSLIYSKYEDWKVEDVFFTSFDGVSTTADIALTEWSEQLVWCNLPDPWEEEYEAHVAPATATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGSSSAL
Homology
[Close]
BLAST of Cp4.1LG19g08410 vs. TrEMBL
Match: A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-16
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 1   MADSLIYSKYEDWKVEDVFFTSFDGVSTTADIALTEWSEQLVWCNLPDPWEEEYEAHVAP 60
           + D LIYSK +DWK EDVFFTS    ++TADIA            LPDPWE++YEA   P
Sbjct: 67  LKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDYEAQAPP 126

Query: 61  ATATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGSSS 100
               +      DG    GE MDC+W S+LNQPLQQGSS+
Sbjct: 127 PPPPSL-----DGGEQGGEAMDCIWRSVLNQPLQQGSSA 160

[Close]
BLAST of Cp4.1LG19g08410 vs. NCBI nr
Match: gi|700193811|gb|KGN49015.1| (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 50/99 (50.51%), Postives = 60/99 (60.61%), Query Frame = 1 

Query: 1   MADSLIYSKYEDWKVEDVFFTSFDGVSTTADIALTEWSEQLVWCNLPDPWEEEYEAHVAP 60
           + D LIYSK +DWK EDVFFTS    ++TADIA            LPDPWE++YEA   P
Sbjct: 67  LKDGLIYSKSDDWKFEDVFFTSVYNGASTADIATPLTIGTAFTEFLPDPWEKDYEAQAPP 126

Query: 61  ATATATATAVEDGEGPAGEGMDCVWNSLLNQPLQQGSSS 100
               +      DG    GE MDC+W S+LNQPLQQGSS+
Sbjct: 127 PPPPSL-----DGGEQGGEAMDCIWRSVLNQPLQQGSSA 160

The following BLAST results are available for this feature:
BLAST of Cp4.1LG19g08410 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g08410 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH39_CUCSA1.1e-1650.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1[more]
BLAST of Cp4.1LG19g08410 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG19g08410 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193811|gb|KGN49015.1|1.6e-1650.51hypothetical protein Csa_6G510330 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG19g08410.1Cp4.1LG19g08410.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG19g08410CmaCh03G006070Cucurbita maxima (Rimu)cmacpeB671
Cp4.1LG19g08410CmaCh07G003710Cucurbita maxima (Rimu)cmacpeB880
Cp4.1LG19g08410CmoCh03G006350Cucurbita moschata (Rifu)cmocpeB624
Cp4.1LG19g08410CmoCh07G003650Cucurbita moschata (Rifu)cmocpeB817
Cp4.1LG19g08410Cla014370Watermelon (97103) v1cpewmB482
Cp4.1LG19g08410Csa6G510330Cucumber (Chinese Long) v2cpecuB503
Cp4.1LG19g08410MELO3C007992Melon (DHL92) v3.5.1cpemeB449
Cp4.1LG19g08410ClCG01G021060Watermelon (Charleston Gray)cpewcgB425
Cp4.1LG19g08410CSPI06G32630Wild cucumber (PI 183967)cpecpiB503
Cp4.1LG19g08410Lsi01G005150Bottle gourd (USVL1VR-Ls)cpelsiB396
Cp4.1LG19g08410MELO3C007992.2Melon (DHL92) v3.6.1cpemedB531
Cp4.1LG19g08410CsaV3_6G048060Cucumber (Chinese Long) v3cpecucB0618
Cp4.1LG19g08410Bhi03G000542Wax gourdcpewgoB0607
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG19g08410Cp4.1LG10g10200Cucurbita pepo (Zucchini)cpecpeB076
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG19g08410Silver-seed gourdcarcpeB0563
Cp4.1LG19g08410Silver-seed gourdcarcpeB0915
Cp4.1LG19g08410Cucumber (Gy14) v1cgycpeB0039
Cp4.1LG19g08410Cucumber (Gy14) v2cgybcpeB810