MELO3C007992 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C007992
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionRepulsive guidance molecule A
Locationchr8 : 6657154 .. 6657660 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

mRNA sequence

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGAACGCCATAACACAAAGCGACCACGAGAATCATCATCATCACCATCACCACCACCACCACCACCCGATGGTATGTATGATCAATCTTCGCCGCCGGAGATCGCTAACGTAAAGAGGCAGCACAGCCACGATGCTGATCAAGAATATTCTTCTCCTGGTACATCATTTGATTTCGATCTGTTGTCGTTCGGCGTCTTCGATTTCCCTTGGTTGAAGGACGGCCTGATTTATTCCAAATCCGATGACTGGAAATTTGAAGACGTTTTCTTCACCTCCGTTTACAATGGAGCATCATCCACCTTTGATATTGCTACTCCGCTTACAATTGGAACGAAGGCGTTTACAGAATTTCTGCCGGATCCTTGGGAGAAGGATTACGAGGCACAAGCGCTGCCGCAGCCTCCGCCGTTTTTGGACGGCGGAGAGCAGGGAGGGGAGGGAATGGATTGTATCTGGAGGTCTGTGCTTAATCAACCGCTTCAACAAGGGAGTAGTGCGTTGTAG

Protein sequence

MERHNTKRPRESSSSPSPPPPPPDGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL*
Homology
[Close]
BLAST of MELO3C007992 vs. TrEMBL
Match: A0A0A0KH39_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 1.6e-76
Identity = 150/168 (89.29%), Postives = 151/168 (89.88%), Query Frame = 1 

Query: 1   MERHNTKRPRESSSSPSPPPPPPDGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFD 60
           MERHNTKRPRESSS  SPP    DG+YDQSS PEIANVKRQHSHD  QE SSPGTSFDFD
Sbjct: 1   MERHNTKRPRESSSLSSPP----DGIYDQSSLPEIANVKRQHSHDNAQE-SSPGTSFDFD 60

Query: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLP 120
           LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGAS T DIATPLTIGT AFTEFLP
Sbjct: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGAS-TADIATPLTIGT-AFTEFLP 120

Query: 121 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL 169
           DPWEKDYEAQA P PPP LDGGEQGGE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 DPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]
BLAST of MELO3C007992 vs. TrEMBL
Match: A0A059CF65_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 8.0e-07
Identity = 42/112 (37.50%), Postives = 55/112 (49.11%), Query Frame = 1 

Query: 57  FDFDLLSFGVFDFPWLK--DGLIYSKSDDW--KFEDVFFTSVYNGASSTFDIATPLTIGT 116
           +D+ + S GVFDFPWL+  DG+I+   +D   K ED F  S    A    +   PL+   
Sbjct: 4   WDYCMSSLGVFDFPWLREGDGMIFGSEEDGESKVEDAFPFSPSFTADHGMEFCEPLSCQN 63

Query: 117 KAFTEFLPDPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQG 165
            A    L D  E D+     P        G    EG+DCIW SVL+QPL+ G
Sbjct: 64  SAL---LLDSLEDDH-GMLSPGQQLLTAQGSDDLEGLDCIWSSVLDQPLEGG 111

[Close]
BLAST of MELO3C007992 vs. TrEMBL
Match: M5WII2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.0e-06
Identity = 63/194 (32.47%), Postives = 81/194 (41.75%), Query Frame = 1 

Query: 2   ERHNTKRPRESSSSPSPPP-----PPPDGMYDQSSPPEIANVKRQHSHDADQEYSSPGTS 61
           E HN   P  SSSS S           DG  +     E+ N   ++   +    S   TS
Sbjct: 14  EGHNNSSPSSSSSSSSSSEREKHVKTKDGPINYGIL-ELKNDVLEYKDSSSSTSSCCKTS 73

Query: 62  FDFDLLSFGVFDFPWLKDGLIYSKSDDW-KFEDVF------------FTSVYN-----GA 121
            +    + GVFDFPWLKDG+I S+S++W  FEDVF            FT+  N     G 
Sbjct: 74  SESHC-ALGVFDFPWLKDGII-SQSEEWINFEDVFSSPVLALDDTPTFTTSSNPGHGIGI 133

Query: 122 SSTFDIATPL------TIGTKAFTEFLPD-PWEKDYEAQALPQPPPFLDGGEQG--GEGM 164
              F  +         T       E L D P  KD   +   + P  L+  + G   EG 
Sbjct: 134 DDQFSFSAAAGRCFYQTHDQSDHQELLLDFPPAKDKLEEDARRSPRDLNQDDDGLENEGA 193

[Close]
BLAST of MELO3C007992 vs. NCBI nr
Match: gi|700193811|gb|KGN49015.1| (hypothetical protein Csa_6G510330 [Cucumis sativus])

HSP 1 Score: 293.5 bits (750), Expect = 2.4e-76
Identity = 150/168 (89.29%), Postives = 151/168 (89.88%), Query Frame = 1 

Query: 1   MERHNTKRPRESSSSPSPPPPPPDGMYDQSSPPEIANVKRQHSHDADQEYSSPGTSFDFD 60
           MERHNTKRPRESSS  SPP    DG+YDQSS PEIANVKRQHSHD  QE SSPGTSFDFD
Sbjct: 1   MERHNTKRPRESSSLSSPP----DGIYDQSSLPEIANVKRQHSHDNAQE-SSPGTSFDFD 60

Query: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIATPLTIGTKAFTEFLP 120
           LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGAS T DIATPLTIGT AFTEFLP
Sbjct: 61  LLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGAS-TADIATPLTIGT-AFTEFLP 120

Query: 121 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSSAL 169
           DPWEKDYEAQA P PPP LDGGEQGGE MDCIWRSVLNQPLQQGSSAL
Sbjct: 121 DPWEKDYEAQAPPPPPPSLDGGEQGGEAMDCIWRSVLNQPLQQGSSAL 161

[Close]
BLAST of MELO3C007992 vs. NCBI nr
Match: gi|1009111379|ref|XP_015900776.1| (PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba])

HSP 1 Score: 81.3 bits (199), Expect = 1.8e-12
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1 

Query: 47  DQEYSSPGTSFDFDLLSFGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASSTFDIAT 106
           D++  +  TS + DL + GVFDFPWLKDG++ SKS++W+FEDVF + +   +S+T    T
Sbjct: 44  DEDDHNKRTSEESDL-AVGVFDFPWLKDGVV-SKSEEWRFEDVFSSPLDETSSTT----T 103

Query: 107 PLTIGTKAFTEFLPDPWEKDYEAQALPQPPP-FLDGGEQGG----EGMDCIWRSVLNQPL 164
             TI T A  EF       ++  Q L Q P   LD  E+      E +DCIW S+LNQPL
Sbjct: 104 SSTITTSAGFEF-------EFSGQCLCQSPEALLDFPEEDKFEETESVDCIWSSLLNQPL 152

[Close]
BLAST of MELO3C007992 vs. NCBI nr
Match: gi|719990502|ref|XP_010252976.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 64  FGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST---FDIATPLTIGTKAFTEFLP 123
           FGVFDFPWLKD L+  +S+DWKF+DVF  S+ + + S     D        T A  E LP
Sbjct: 65  FGVFDFPWLKDNLVL-ESEDWKFDDVFSASLGDVSVSVGGGVDFGGQCLCQTPALVEILP 124

Query: 124 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSS 167
                      L +     +GG    +G DCIW SVL+QPL  G S
Sbjct: 125 --------GDTLDEESWPCEGGMNDIDGGDCIWSSVLSQPLSTGFS 161

[Close]
BLAST of MELO3C007992 vs. NCBI nr
Match: gi|719990505|ref|XP_010252977.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 64  FGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST---FDIATPLTIGTKAFTEFLP 123
           FGVFDFPWLKD L+  +S+DWKF+DVF  S+ + + S     D        T A  E LP
Sbjct: 56  FGVFDFPWLKDNLVL-ESEDWKFDDVFSASLGDVSVSVGGGVDFGGQCLCQTPALVEILP 115

Query: 124 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSS 167
                      L +     +GG    +G DCIW SVL+QPL  G S
Sbjct: 116 --------GDTLDEESWPCEGGMNDIDGGDCIWSSVLSQPLSTGFS 152

[Close]
BLAST of MELO3C007992 vs. NCBI nr
Match: gi|719990499|ref|XP_010252975.1| (PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera])

HSP 1 Score: 71.6 bits (174), Expect = 1.5e-09
Identity = 44/106 (41.51%), Postives = 55/106 (51.89%), Query Frame = 1 

Query: 64  FGVFDFPWLKDGLIYSKSDDWKFEDVFFTSVYNGASST---FDIATPLTIGTKAFTEFLP 123
           FGVFDFPWLKD L+  +S+DWKF+DVF  S+ + + S     D        T A  E LP
Sbjct: 77  FGVFDFPWLKDNLVL-ESEDWKFDDVFSASLGDVSVSVGGGVDFGGQCLCQTPALVEILP 136

Query: 124 DPWEKDYEAQALPQPPPFLDGGEQGGEGMDCIWRSVLNQPLQQGSS 167
                      L +     +GG    +G DCIW SVL+QPL  G S
Sbjct: 137 --------GDTLDEESWPCEGGMNDIDGGDCIWSSVLSQPLSTGFS 173

The following BLAST results are available for this feature:
BLAST of MELO3C007992 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH39_CUCSA1.6e-7689.29Uncharacterized protein OS=Cucumis sativus GN=Csa_6G510330 PE=4 SV=1[more]
A0A059CF65_EUCGR8.0e-0737.50Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00961 PE=4 SV=1[more]
M5WII2_PRUPE3.0e-0632.47Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016487mg PE=4 SV=1[more]
BLAST of MELO3C007992 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193811|gb|KGN49015.1|2.4e-7689.29hypothetical protein Csa_6G510330 [Cucumis sativus][more]
gi|1009111379|ref|XP_015900776.1|1.8e-1244.26PREDICTED: uncharacterized protein LOC107433898 [Ziziphus jujuba][more]
gi|719990502|ref|XP_010252976.1|1.5e-0941.51PREDICTED: uncharacterized protein LOC104594382 isoform X2 [Nelumbo nucifera][more]
gi|719990505|ref|XP_010252977.1|1.5e-0941.51PREDICTED: uncharacterized protein LOC104594382 isoform X3 [Nelumbo nucifera][more]
gi|719990499|ref|XP_010252975.1|1.5e-0941.51PREDICTED: uncharacterized protein LOC104594382 isoform X1 [Nelumbo nucifera][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C007992T1MELO3C007992T1mRNA