Cucsa.326130 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.326130
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Hypoxia-responsive family protein
Location	scaffold03132 : 373165 .. 373696 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGTACTTTATTTCCCATTTCCCAATCTTTTTtCTTTACTCTCTTCCTAAATCTAATCACTTTGTTTTTGGGTTATACATTATAGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAATTCCTCAAACTACTCTTCTCTTCTCTACATTTAGTATTGTGCAAAATAAAATAGTCATCATAGTGTATGTCCCCATATATCCCATGAGTATAGAGTAAATAGTCGTAGTGTAACTATTTCCCATTCTCTTTTTCTTATTCAAATTGAGAATGAAATATTAATTTGGTTTTGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

mRNA sequence

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

Protein sequence

MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDNKIGRDRSEAPPVSGGGK*

Homology

[Close]

BLAST of Cucsa.326130 vs. TrEMBL
Match: A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.4e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cucsa.326130 vs. TrEMBL
Match: W9QXG0_9ROSA (BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.4e-26
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRDRSE 78
          GAA+YHYY+ ++G   +E
Sbjct: 61 GAAIYHYYEKRVGEKDAE 78

[Close]

BLAST of Cucsa.326130 vs. TrEMBL
Match: A0A061FYY0_THECC (Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-26
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGA+WAS IGASLAY TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRD 75
          GAA YHYY+    ++
Sbjct: 61 GAAAYHYYEKSSSKE 75

[Close]

BLAST of Cucsa.326130 vs. TrEMBL
Match: I3TA54_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 58/71 (81.69%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASL-AYTRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          ME++Q+WVSEHKLT+IGALWASGIGA+L AY+R+++P+KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MESVQSWVSEHKLTSIGALWASGIGATLLAYSRTKSPMKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNK 71
          GAAVYHYY+N+
Sbjct: 61 GAAVYHYYENR 71

[Close]

BLAST of Cucsa.326130 vs. TrEMBL
Match: A0A067DTH2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.5e-25
Identity = 57/68 (83.82%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLT+IGA+WAS IGASLAYT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYD 69
          AA YHYY+
Sbjct: 71 AAAYHYYE 78

[Close]

BLAST of Cucsa.326130 vs. TAIR10
Match: AT3G05550.1 (AT3G05550.1 Hypoxia-responsive family protein)

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of Cucsa.326130 vs. TAIR10
Match: AT5G27760.1 (AT5G27760.1 Hypoxia-responsive family protein)

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKIG 73
            YYD+K G
Sbjct: 71 VEYYDHKSG 79

[Close]

BLAST of Cucsa.326130 vs. NCBI nr
Match: gi|449441262|ref|XP_004138401.1| (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 6.3e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of Cucsa.326130 vs. NCBI nr
Match: gi|659113791|ref|XP_008456757.1| (PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo])

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-38
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Cucsa.326130 vs. NCBI nr
Match: gi|703063828|ref|XP_010087051.1| (BTB/POZ domain-containing protein [Morus notabilis])

HSP 1 Score: 126.7 bits (317), Expect = 2.0e-26
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRDRSE 78
          GAA+YHYY+ ++G   +E
Sbjct: 61 GAAIYHYYEKRVGEKDAE 78

[Close]

BLAST of Cucsa.326130 vs. NCBI nr
Match: gi|590569940|ref|XP_007011209.1| (Hypoxia-responsive family protein [Theobroma cacao])

HSP 1 Score: 124.4 bits (311), Expect = 9.7e-26
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGA+WAS IGASLAY TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRD 75
          GAA YHYY+    ++
Sbjct: 61 GAAAYHYYEKSSSKE 75

[Close]

BLAST of Cucsa.326130 vs. NCBI nr
Match: gi|388522669|gb|AFK49396.1| (unknown [Lotus japonicus])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 58/71 (81.69%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASL-AYTRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          ME++Q+WVSEHKLT+IGALWASGIGA+L AY+R+++P+KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MESVQSWVSEHKLTSIGALWASGIGATLLAYSRTKSPMKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNK 71
          GAAVYHYY+N+
Sbjct: 61 GAAVYHYYENR 71

The following BLAST results are available for this feature:

BLAST of Cucsa.326130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4_CUCSA	4.4e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1	[more]
W9QXG0_9ROSA	1.4e-26	79.49	BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1	[more]
A0A061FYY0_THECC	6.8e-26	81.33	Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1	[more]
I3TA54_LOTJA	1.2e-25	81.69	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A067DTH2_CITSI	1.5e-25	83.82	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 S...	[more]

BLAST of Cucsa.326130 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05550.1	2.5e-19	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	4.2e-19	59.42	Hypoxia-responsive family protein	[more]

BLAST of Cucsa.326130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441262\|ref\|XP_004138401.1\|	6.3e-41	100.00	PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus]	[more]
gi\|659113791\|ref\|XP_008456757.1\|	1.3e-38	95.35	PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo...	[more]
gi\|703063828\|ref\|XP_010087051.1\|	2.0e-26	79.49	BTB/POZ domain-containing protein [Morus notabilis]	[more]
gi\|590569940\|ref\|XP_007011209.1\|	9.7e-26	81.33	Hypoxia-responsive family protein [Theobroma cacao]	[more]
gi\|388522669\|gb\|AFK49396.1\|	1.7e-25	81.69	unknown [Lotus japonicus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.326130.1	Cucsa.326130.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 score: 5.
IPR007667	Hypoxia induced protein, domain	PROFILE	PS51503	HIG1	coord: 1..76 score: 20
None	No IPR available	PANTHER	PTHR28018	FAMILY NOT NAMED	coord: 1..78 score: 1.3
None	No IPR available	PANTHER	PTHR28018:SF3	SUBFAMILY NOT NAMED	coord: 1..78 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.326130	Cla006620	Watermelon (97103) v1	cgywmB592
Cucsa.326130	Csa6G013920	Cucumber (Chinese Long) v2	cgycuB465
Cucsa.326130	MELO3C019992	Melon (DHL92) v3.5.1	cgymeB536
Cucsa.326130	ClCG11G005830	Watermelon (Charleston Gray)	cgywcgB562
Cucsa.326130	CSPI06G02000	Wild cucumber (PI 183967)	cgycpiB491
Cucsa.326130	CmaCh04G028760	Cucurbita maxima (Rimu)	cgycmaB0905
Cucsa.326130	CmoCh04G030030	Cucurbita moschata (Rifu)	cgycmoB0903
Cucsa.326130	CmoCh15G001670	Cucurbita moschata (Rifu)	cgycmoB0900
Cucsa.326130	Lsi03G002780	Bottle gourd (USVL1VR-Ls)	cgylsiB533
Cucsa.326130	Cp4.1LG13g07490	Cucurbita pepo (Zucchini)	cgycpeB0859
Cucsa.326130	Cp4.1LG01g21900	Cucurbita pepo (Zucchini)	cgycpeB0861
Cucsa.326130	MELO3C019992.2	Melon (DHL92) v3.6.1	cgymedB537
Cucsa.326130	CsaV3_6G002150	Cucumber (Chinese Long) v3	cgycucB506
Cucsa.326130	Cla97C11G212740	Watermelon (97103) v2	cgywmbB566
Cucsa.326130	Bhi04G001852	Wax gourd	cgywgoB659
Cucsa.326130	Carg05950	Silver-seed gourd	carcgyB0026
Cucsa.326130	Carg02146	Silver-seed gourd	carcgyB0319

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.326130	Melon (DHL92) v3.6.1	cgymedB538
Cucsa.326130	Watermelon (97103) v2	cgywmbB567
Cucsa.326130	Wax gourd	cgywgoB661
Cucsa.326130	Cucurbita maxima (Rimu)	cgycmaB0903
Cucsa.326130	Cucurbita moschata (Rifu)	cgycmoB0902
Cucsa.326130	Bottle gourd (USVL1VR-Ls)	cgylsiB532