Cla006620 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla006620
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Hypoxia induced protein conserved region containing protein expressed (AHRD V1 ***- Q2QYP0_ORYSJ)
Location	Chr11 : 2155331 .. 2155792 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGTTAGTATTACTACTCTTCTTCTTATCATCATCATCATCATCATCATCATCATTTTCCATTCTTTTTCTTTGCTCTCTTTTTAAAATGCCTTTTTCCTTATACATAGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGTAACTCTAAGAATTATAGGAACTCGACCAAGAATGAAGAAATGTATTTTTGGGTTTTCTAATTCTAATTCATAAATATTAATTTGGTTTGTAATAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGA

mRNA sequence

ATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCCTGGGTTTCAGATCACAAACTCACCACCGTTGGAGCTCTGTGGGCATCTGGGATCGGAGCATCGCTGGCTTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGTCTTATCCATGCTAGGATGCATGCTCAGGCATTGACCTTGGCGGTTCTTTCCGGCGCTGCCGTCTACCACTACTACGAGAACAAACTCGCCGGCGACCGATCGGAAGCTCCCGCTTCCCCTGGAGGGAAATGA

Protein sequence

MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKLAGDRSEAPASPGGK

Homology

[Close]

BLAST of Cla006620 vs. TrEMBL
Match: A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 6.0e-35
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASPGG 85
          AAVYHYY+NK+  DRSEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of Cla006620 vs. TrEMBL
Match: W9QXG0_9ROSA (BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.7e-26
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVS+HKLT++GALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYENKLAGDRSEAPASP 83
          GAA+YHYYE ++    +E  ASP
Sbjct: 61 GAAIYHYYEKRVGEKDAENIASP 83

[Close]

BLAST of Cla006620 vs. TrEMBL
Match: A0A067DTH2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSDHKLT++GA+WAS IGASLAYT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYE 69
          AA YHYYE
Sbjct: 71 AAAYHYYE 78

[Close]

BLAST of Cla006620 vs. TrEMBL
Match: V4TBZ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 3.0e-26
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSDHKLT++GA+WAS IGASLAYT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYE 69
          AA YHYYE
Sbjct: 61 AAAYHYYE 68

[Close]

BLAST of Cla006620 vs. TrEMBL
Match: I3TA54_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.6e-26
Identity = 60/83 (72.29%), Postives = 76/83 (91.57%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASL-AYTRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          ME++Q+WVS+HKLT++GALWASGIGA+L AY+R+++P+KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MESVQSWVSEHKLTSIGALWASGIGATLLAYSRTKSPMKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYENK--LAGDRSEAPA 81
          GAAVYHYYEN+  L    +++PA
Sbjct: 61 GAAVYHYYENRSVLPNRAADSPA 83

[Close]

BLAST of Cla006620 vs. NCBI nr
Match: gi|449441262|ref|XP_004138401.1| (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus])

HSP 1 Score: 154.5 bits (389), Expect = 8.6e-35
Identity = 75/84 (89.29%), Postives = 79/84 (94.05%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEAPASPGG 85
          AAVYHYY+NK+  DRSEAP   GG
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGG 84

[Close]

BLAST of Cla006620 vs. NCBI nr
Match: gi|659113791|ref|XP_008456757.1| (PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo])

HSP 1 Score: 152.9 bits (385), Expect = 2.5e-34
Identity = 76/86 (88.37%), Postives = 80/86 (93.02%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLTT+GALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKLAGDRSEA-PASPGGK 86
          AAVYHYY+NK   DRSEA P S GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of Cla006620 vs. NCBI nr
Match: gi|703063828|ref|XP_010087051.1| (BTB/POZ domain-containing protein [Morus notabilis])

HSP 1 Score: 126.3 bits (316), Expect = 2.5e-26
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVS+HKLT++GALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYENKLAGDRSEAPASP 83
          GAA+YHYYE ++    +E  ASP
Sbjct: 61 GAAIYHYYEKRVGEKDAENIASP 83

[Close]

BLAST of Cla006620 vs. NCBI nr
Match: gi|641825604|gb|KDO44870.1| (hypothetical protein CISIN_1g048348mg, partial [Citrus sinensis])

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSDHKLT++GA+WAS IGASLAYT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYE 69
          AA YHYYE
Sbjct: 71 AAAYHYYE 78

[Close]

BLAST of Cla006620 vs. NCBI nr
Match: gi|567886676|ref|XP_006435860.1| (hypothetical protein CICLE_v10033224mg [Citrus clementina])

HSP 1 Score: 125.6 bits (314), Expect = 4.3e-26
Identity = 58/68 (85.29%), Postives = 65/68 (95.59%), Query Frame = 1


Query: 1  MEAIQAWVSDHKLTTVGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSDHKLT++GA+WAS IGASLAYT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYE 69
          AA YHYYE
Sbjct: 61 AAAYHYYE 68

The following BLAST results are available for this feature:

BLAST of Cla006620 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4_CUCSA	6.0e-35	89.29	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1	[more]
W9QXG0_9ROSA	1.7e-26	75.90	BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1	[more]
A0A067DTH2_CITSI	3.0e-26	85.29	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 S...	[more]
V4TBZ6_9ROSI	3.0e-26	85.29	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1	[more]
I3TA54_LOTJA	8.6e-26	72.29	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cla006620 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441262\|ref\|XP_004138401.1\|	8.6e-35	89.29	PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus]	[more]
gi\|659113791\|ref\|XP_008456757.1\|	2.5e-34	88.37	PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo...	[more]
gi\|703063828\|ref\|XP_010087051.1\|	2.5e-26	75.90	BTB/POZ domain-containing protein [Morus notabilis]	[more]
gi\|641825604\|gb\|KDO44870.1\|	4.3e-26	85.29	hypothetical protein CISIN_1g048348mg, partial [Citrus sinensis]	[more]
gi\|567886676\|ref\|XP_006435860.1\|	4.3e-26	85.29	hypothetical protein CICLE_v10033224mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0097249	mitochondrial respiratory chain supercomplex
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla006620	Cla006620.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 score: 2.
IPR007667	Hypoxia induced protein, domain	PROFILE	PS51503	HIG1	coord: 1..76 score: 19
None	No IPR available	PANTHER	PTHR28018	FAMILY NOT NAMED	coord: 1..70 score: 1.8
None	No IPR available	PANTHER	PTHR28018:SF3	SUBFAMILY NOT NAMED	coord: 1..70 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla006620	Cla97C11G212740	Watermelon (97103) v2	wmwmbB362
Cla006620	Csa6G013920	Cucumber (Chinese Long) v2	cuwmB533
Cla006620	MELO3C019992	Melon (DHL92) v3.5.1	mewmB334
Cla006620	ClCG11G005830	Watermelon (Charleston Gray)	wcgwmB108
Cla006620	CSPI06G02000	Wild cucumber (PI 183967)	cpiwmB552
Cla006620	Cucsa.326130	Cucumber (Gy14) v1	cgywmB592
Cla006620	CmaCh04G028760	Cucurbita maxima (Rimu)	cmawmB737
Cla006620	CmoCh15G001670	Cucurbita moschata (Rifu)	cmowmB274
Cla006620	CmoCh04G030030	Cucurbita moschata (Rifu)	cmowmB731
Cla006620	Lsi03G002780	Bottle gourd (USVL1VR-Ls)	lsiwmB277
Cla006620	Cp4.1LG13g07490	Cucurbita pepo (Zucchini)	cpewmB196
Cla006620	Cp4.1LG01g21900	Cucurbita pepo (Zucchini)	cpewmB461
Cla006620	CsGy6G002080	Cucumber (Gy14) v2	cgybwmB497
Cla006620	MELO3C019992.2	Melon (DHL92) v3.6.1	medwmB331
Cla006620	Carg05950	Silver-seed gourd	carwmB0024
Cla006620	CsaV3_6G002150	Cucumber (Chinese Long) v3	cucwmB558
Cla006620	Bhi04G001852	Wax gourd	wgowmB347

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla006620	Watermelon (97103) v1	wmwmB096
Cla006620	Cucurbita maxima (Rimu)	cmawmB283
Cla006620	Cucurbita maxima (Rimu)	cmawmB740
Cla006620	Cucurbita maxima (Rimu)	cmawmB742
Cla006620	Cucurbita moschata (Rifu)	cmowmB734
Cla006620	Cucurbita pepo (Zucchini)	cpewmB464
Cla006620	Silver-seed gourd	carwmB0261
Cla006620	Silver-seed gourd	carwmB0673