Cp4.1LG01g21900 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG01g21900
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionHypoxia-responsive family protein
LocationCp4.1LG01 : 20520522 .. 20520950 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGTAAACACACGATATCATTCAATGGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

mRNA sequence

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Coding sequence (CDS)

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGTGTCTGGGATTGGAGCCTCGCTGGTGTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAATCCGTCGCCGACCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Protein sequence

MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKSVADRTEVSASAVPGK
Homology
[Close]
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match: A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.3e-28
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 89
          AAVYHYY  + K   DR+E    +  GK
Sbjct: 61 AAVYHYY--DNKIGRDRSEAPPVSGGGK 86

[Close]
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match: A0A067JNW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-26
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALW + +G SL YTR+RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKSVA 76
          AA+YHYYEK++++VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match: A0A061FYY0_THECC (Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.0e-25
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+W+SEHKLTSIGA+W S IGASL Y TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYEK 70
          GAA YHYYEK
Sbjct: 61 GAAAYHYYEK 70

[Close]
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match: A0A067DTH2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+W S IGASL YT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 71 AAAYHYYEK 79

[Close]
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match: V4TBZ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 57/69 (82.61%), Postives = 64/69 (92.75%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+W S IGASL YT++RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 61 AAAYHYYEK 69

[Close]
BLAST of Cp4.1LG01g21900 vs. TAIR10
Match: AT3G05550.1 (AT3G05550.1 Hypoxia-responsive family protein)

HSP 1 Score: 84.0 bits (206), Expect = 5.2e-17
Identity = 37/72 (51.39%), Postives = 55/72 (76.39%), Query Frame = 1 

Query: 2  EAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ W+S+HKL ++G LW+SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYEKEKKS 74
          AV  YY+ + ++
Sbjct: 69 AVVEYYDHKTEA 80

[Close]
BLAST of Cp4.1LG01g21900 vs. TAIR10
Match: AT5G27760.1 (AT5G27760.1 Hypoxia-responsive family protein)

HSP 1 Score: 83.2 bits (204), Expect = 8.9e-17
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1 

Query: 4  IQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ WI EHKL ++G LW+SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKEKKSVADR 78
            YY+  K    DR
Sbjct: 71 VEYYD-HKSGATDR 83

[Close]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: gi|449441262|ref|XP_004138401.1| (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 6.2e-28
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SGIGASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 89
          AAVYHYY  + K   DR+E    +  GK
Sbjct: 61 AAVYHYY--DNKIGRDRSEAPPVSGGGK 86

[Close]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: gi|659113791|ref|XP_008456757.1| (PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo])

HSP 1 Score: 130.2 bits (326), Expect = 1.8e-27
Identity = 68/88 (77.27%), Postives = 74/88 (84.09%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALW SG+GASL YTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKEKKSVADRTEVSASAVPGK 89
          AAVYHYY  + K   DR+E    +  GK
Sbjct: 61 AAVYHYY--DNKFGNDRSEAPPVSRGGK 86

[Close]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: gi|802778615|ref|XP_012091193.1| (PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas])

HSP 1 Score: 126.3 bits (316), Expect = 2.6e-26
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALW + +G SL YTR+RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKSVA 76
          AA+YHYYEK++++VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: gi|645256211|ref|XP_008233847.1| (PREDICTED: uncharacterized protein LOC103332861 [Prunus mume])

HSP 1 Score: 124.4 bits (311), Expect = 9.8e-26
Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W++EHKL +IGA+WVSGIGASL Y+R+RTPLKPSLRLIHARMHAQALTL VLSG
Sbjct: 1  MEAIQSWVAEHKLKAIGAIWVSGIGASLAYSRARTPLKPSLRLIHARMHAQALTLVVLSG 60

Query: 61 AAVYHYYEKEKKSVADR 78
          AA YHYYEK +   ADR
Sbjct: 61 AAAYHYYEKHE---ADR 74

[Close]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match: gi|590569940|ref|XP_007011209.1| (Hypoxia-responsive family protein [Theobroma cacao])

HSP 1 Score: 122.9 bits (307), Expect = 2.9e-25
Identity = 61/70 (87.14%), Postives = 65/70 (92.86%), Query Frame = 1 

Query: 1  MEAIQAWISEHKLTSIGALWVSGIGASLVY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+W+SEHKLTSIGA+W S IGASL Y TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYEK 70
          GAA YHYYEK
Sbjct: 61 GAAAYHYYEK 70

The following BLAST results are available for this feature:
BLAST of Cp4.1LG01g21900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG01g21900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7T4_CUCSA4.3e-2878.41Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1[more]
A0A067JNW4_JATCU1.8e-2676.00Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1[more]
A0A061FYY0_THECC2.0e-2587.14Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1[more]
A0A067DTH2_CITSI2.6e-2582.61Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 S... [more]
V4TBZ6_9ROSI2.6e-2582.61Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1[more]
BLAST of Cp4.1LG01g21900 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G05550.15.2e-1751.39 Hypoxia-responsive family protein[more]
AT5G27760.18.9e-1754.05 Hypoxia-responsive family protein[more]
BLAST of Cp4.1LG01g21900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449441262|ref|XP_004138401.1|6.2e-2878.41PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus][more]
gi|659113791|ref|XP_008456757.1|1.8e-2777.27PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo... [more]
gi|802778615|ref|XP_012091193.1|2.6e-2676.00PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas][more]
gi|645256211|ref|XP_008233847.1|9.8e-2679.22PREDICTED: uncharacterized protein LOC103332861 [Prunus mume][more]
gi|590569940|ref|XP_007011209.1|2.9e-2587.14Hypoxia-responsive family protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0033617 mitochondrial respiratory chain complex IV assembly
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005575 cellular_component
cellular_component GO:0031305 integral component of mitochondrial inner membrane
cellular_component GO:0097249 mitochondrial respiratory chain supercomplex
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG01g21900.1Cp4.1LG01g21900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007667Hypoxia induced protein, domainPFAMPF04588HIG_1_Ncoord: 10..59
score: 1.
IPR007667Hypoxia induced protein, domainPROFILEPS51503HIG1coord: 1..76
score: 19
NoneNo IPR availablePANTHERPTHR28018FAMILY NOT NAMEDcoord: 1..79
score: 1.7
NoneNo IPR availablePANTHERPTHR28018:SF3SUBFAMILY NOT NAMEDcoord: 1..79
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG01g21900Cucsa.326130Cucumber (Gy14) v1cgycpeB0861
Cp4.1LG01g21900CmaCh04G028760Cucurbita maxima (Rimu)cmacpeB721
Cp4.1LG01g21900CmoCh15G001670Cucurbita moschata (Rifu)cmocpeB279
Cp4.1LG01g21900CmoCh04G030030Cucurbita moschata (Rifu)cmocpeB673
Cp4.1LG01g21900Cla006620Watermelon (97103) v1cpewmB461
Cp4.1LG01g21900Csa6G013920Cucumber (Chinese Long) v2cpecuB460
Cp4.1LG01g21900MELO3C019992Melon (DHL92) v3.5.1cpemeB397
Cp4.1LG01g21900ClCG11G005830Watermelon (Charleston Gray)cpewcgB355
Cp4.1LG01g21900CSPI06G02000Wild cucumber (PI 183967)cpecpiB461
Cp4.1LG01g21900Lsi03G002780Bottle gourd (USVL1VR-Ls)cpelsiB339
Cp4.1LG01g21900MELO3C019992.2Melon (DHL92) v3.6.1cpemedB462
Cp4.1LG01g21900CsaV3_6G002150Cucumber (Chinese Long) v3cpecucB0569
Cp4.1LG01g21900Bhi04G001852Wax gourdcpewgoB0525
Cp4.1LG01g21900CsGy6G002080Cucumber (Gy14) v2cgybcpeB798
Cp4.1LG01g21900Carg02146Silver-seed gourdcarcpeB0374
Cp4.1LG01g21900Carg05950Silver-seed gourdcarcpeB0034
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG01g21900Cp4.1LG13g07490Cucurbita pepo (Zucchini)cpecpeB199
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG01g21900Cucurbita pepo (Zucchini)cpecpeB074
Cp4.1LG01g21900Cucurbita pepo (Zucchini)cpecpeB376
Cp4.1LG01g21900Cucumber (Gy14) v1cgycpeB0344
Cp4.1LG01g21900Cucurbita maxima (Rimu)cmacpeB317
Cp4.1LG01g21900Cucurbita moschata (Rifu)cmocpeB614
Cp4.1LG01g21900Wild cucumber (PI 183967)cpecpiB412
Cp4.1LG01g21900Cucumber (Chinese Long) v2cpecuB413
Cp4.1LG01g21900Bottle gourd (USVL1VR-Ls)cpelsiB328
Cp4.1LG01g21900Watermelon (Charleston Gray)cpewcgB383
Cp4.1LG01g21900Watermelon (97103) v1cpewmB445
Cp4.1LG01g21900Melon (DHL92) v3.5.1cpemeB433
Cp4.1LG01g21900Cucumber (Gy14) v2cgybcpeB514
Cp4.1LG01g21900Melon (DHL92) v3.6.1cpemedB505
Cp4.1LG01g21900Silver-seed gourdcarcpeB0892
Cp4.1LG01g21900Cucumber (Chinese Long) v3cpecucB0509
Cp4.1LG01g21900Wax gourdcpewgoB0546