Carg05950 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05950
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Hypoxia-responsive family protein
Location	Cucurbita_argyrosperma_scaffold_026 : 407532 .. 407995 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATGTTCTTTCCCATAACATTATATATGAATTTTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGTAAACACACGATATCATTCAATAGAGACCATGATATCCATTTTTTTCGTTAAAACTGAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGA

mRNA sequence

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGA

Coding sequence (CDS)

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTGTACACAAAATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATTCATGCCAGGATGCATGCTCAGGCTTTGACGTTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAAGGAGAAGAAAGGCGTCGCCGATCGAACCAAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Protein sequence

MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYEKEKKGVADRTKVSASAVPGK

Homology

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: XP_004138401.1 (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_6G013920 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKE 71
          AAVYHYY+ +
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: XP_012091193.1 (uncharacterized protein LOC105649214 [Jatropha curcas] >KDP21685.1 hypothetical protein JCGZ_03356 [Jatropha curcas])

HSP 1 Score: 126.3 bits (316), Expect = 5.0e-26
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALWA+ +G SL YT++RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKGVA 76
          AA+YHYYEK+++ VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: ESR49100.1 (hypothetical protein CICLE_v10033224mg [Citrus clementina] >GAY40549.1 hypothetical protein CUMW_052800 [Citrus unshiu])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+WAS IGASL YTK+RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 61 AAAYHYYEK 69

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: KDO44870.1 (hypothetical protein CISIN_1g048348mg, partial [Citrus sinensis])

HSP 1 Score: 125.2 bits (313), Expect = 1.1e-25
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+WAS IGASL YTK+RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 71 AAAYHYYEK 79

[Close]

BLAST of Carg05950 vs. NCBI nr
Match: PQQ06389.1 (hypothetical protein Pyn_04239 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 122.9 bits (307), Expect = 5.6e-25
Identity = 60/79 (75.95%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W++EHKL +IGA+W SGIGASL Y+++RTPLKPSLRLIHARMHAQALTL VLSG
Sbjct: 1  MEAIQSWVAEHKLKAIGAIWVSGIGASLAYSRARTPLKPSLRLIHARMHAQALTLVVLSG 60

Query: 61 AAVYHYYEKEKKGVADRTK 80
          AA YHYYEK +   ADR K
Sbjct: 61 AAAYHYYEKHE---ADRQK 76

[Close]

BLAST of Carg05950 vs. TAIR10
Match: AT5G27760.1 (Hypoxia-responsive family protein)

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 0


Query: 4  IQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ WI EHKL ++G LW SGI  S+ Y  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYEKEKKGVADR 78
            YY+  K G  DR
Sbjct: 71 VEYYD-HKSGATDR 83

[Close]

BLAST of Carg05950 vs. TAIR10
Match: AT3G05550.1 (Hypoxia-responsive family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 2  EAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ W+S+HKL ++G LW SGI  S+ Y  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYE 69
          AV  YY+
Sbjct: 69 AVVEYYD 75

[Close]

BLAST of Carg05950 vs. TrEMBL
Match: tr|A0A0A0K7T4|A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.4e-27
Identity = 63/70 (90.00%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAW+SEHKLT+IGALWASGIGASL YT+SRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYEKE 71
          AAVYHYY+ +
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of Carg05950 vs. TrEMBL
Match: tr|A0A067JNW4|A0A067JNW4_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.3e-26
Identity = 57/75 (76.00%), Postives = 70/75 (93.33%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          ME +Q+W+S+HKLTSIGALWA+ +G SL YT++RTPLKPSLRLIHARMHAQA+TLAVLSG
Sbjct: 1  MEGLQSWVSKHKLTSIGALWATAVGGSLAYTRTRTPLKPSLRLIHARMHAQAITLAVLSG 60

Query: 61 AAVYHYYEKEKKGVA 76
          AA+YHYYEK+++ VA
Sbjct: 61 AAIYHYYEKQEENVA 75

[Close]

BLAST of Carg05950 vs. TrEMBL
Match: tr|V4TBZ6|V4TBZ6_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033224mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+WAS IGASL YTK+RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 61 AAAYHYYEK 69

[Close]

BLAST of Carg05950 vs. TrEMBL
Match: tr|A0A2H5NK51|A0A2H5NK51_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_052800 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+WAS IGASL YTK+RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 1  MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 60

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 61 AAAYHYYEK 69

[Close]

BLAST of Carg05950 vs. TrEMBL
Match: tr|A0A067DTH2|A0A067DTH2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048348mg PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.4e-26
Identity = 59/69 (85.51%), Postives = 65/69 (94.20%), Query Frame = 0


Query: 1  MEAIQAWISEHKLTSIGALWASGIGASLVYTKSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+W+S+HKLTSIGA+WAS IGASL YTK+RTPLKPSLRLIHARMHAQA+TL VLSG
Sbjct: 11 MEAIQSWVSDHKLTSIGAVWASAIGASLAYTKTRTPLKPSLRLIHARMHAQAITLVVLSG 70

Query: 61 AAVYHYYEK 70
          AA YHYYEK
Sbjct: 71 AAAYHYYEK 79

The following BLAST results are available for this feature:

BLAST of Carg05950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138401.1	2.0e-27	90.00	PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hy...	[more]
XP_012091193.1	5.0e-26	76.00	uncharacterized protein LOC105649214 [Jatropha curcas] >KDP21685.1 hypothetical ...	[more]
ESR49100.1	1.1e-25	85.51	hypothetical protein CICLE_v10033224mg [Citrus clementina] >GAY40549.1 hypotheti...	[more]
KDO44870.1	1.1e-25	85.51	hypothetical protein CISIN_1g048348mg, partial [Citrus sinensis]	[more]
PQQ06389.1	5.6e-25	75.95	hypothetical protein Pyn_04239 [Prunus yedoensis var. nudiflora]	[more]

BLAST of Carg05950 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27760.1	3.0e-17	55.41	Hypoxia-responsive family protein	[more]
AT3G05550.1	1.2e-16	55.22	Hypoxia-responsive family protein	[more]

BLAST of Carg05950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05950 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K7T4\|A0A0A0K7T4_CUCSA	1.4e-27	90.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1	[more]
tr\|A0A067JNW4\|A0A067JNW4_JATCU	3.3e-26	76.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_03356 PE=4 SV=1	[more]
tr\|V4TBZ6\|V4TBZ6_9ROSI	7.4e-26	85.51	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033224mg PE=4 ...	[more]
tr\|A0A2H5NK51\|A0A2H5NK51_CITUN	7.4e-26	85.51	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_052800 PE=4 SV=1	[more]
tr\|A0A067DTH2\|A0A067DTH2_CITSI	7.4e-26	85.51	Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g048348m...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05950-RA	Carg05950-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 e-value: 3.8E-8 score: 33.3
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 19.01
None	No IPR available	PANTHER	PTHR28018	FAMILY NOT NAMED	coord: 1..77
None	No IPR available	PANTHER	PTHR28018:SF3	SUBFAMILY NOT NAMED	coord: 1..77

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05950	Cla006620	Watermelon (97103) v1	carwmB0024
Carg05950	Csa6G013920	Cucumber (Chinese Long) v2	carcuB0023
Carg05950	MELO3C019992	Melon (DHL92) v3.5.1	carmeB0021
Carg05950	ClCG11G005830	Watermelon (Charleston Gray)	carwcgB0019
Carg05950	CSPI06G02000	Wild cucumber (PI 183967)	carcpiB0024
Carg05950	Cucsa.326130	Cucumber (Gy14) v1	carcgyB0026
Carg05950	CmaCh04G028760	Cucurbita maxima (Rimu)	carcmaB0033
Carg05950	CmoCh15G001670	Cucurbita moschata (Rifu)	carcmoB0031
Carg05950	CmoCh04G030030	Cucurbita moschata (Rifu)	carcmoB0033
Carg05950	Lsi03G002780	Bottle gourd (USVL1VR-Ls)	carlsiB017
Carg05950	Cp4.1LG01g21900	Cucurbita pepo (Zucchini)	carcpeB0034
Carg05950	Cp4.1LG13g07490	Cucurbita pepo (Zucchini)	carcpeB0031
Carg05950	CsGy6G002080	Cucumber (Gy14) v2	carcgybB0023
Carg05950	MELO3C019992.2	Melon (DHL92) v3.6.1	carmedB0022
Carg05950	CsaV3_6G002150	Cucumber (Chinese Long) v3	carcucB0024
Carg05950	Cla97C11G212740	Watermelon (97103) v2	carwmbB0015
Carg05950	Bhi04G001852	Wax gourd	carwgoB0022

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05950	Carg02146	Silver-seed gourd	carcarB020

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05950	Silver-seed gourd	carcarB021
Carg05950	Silver-seed gourd	carcarB024
Carg05950	Silver-seed gourd	carcarB025
Carg05950	Cucumber (Gy14) v2	carcgybB0019
Carg05950	Cucumber (Gy14) v1	carcgyB0018
Carg05950	Cucurbita maxima (Rimu)	carcmaB0030
Carg05950	Cucurbita maxima (Rimu)	carcmaB0032
Carg05950	Cucurbita moschata (Rifu)	carcmoB0032
Carg05950	Cucurbita moschata (Rifu)	carcmoB0035
Carg05950	Cucurbita pepo (Zucchini)	carcpeB0030
Carg05950	Wild cucumber (PI 183967)	carcpiB0020
Carg05950	Cucumber (Chinese Long) v2	carcuB0020
Carg05950	Cucumber (Chinese Long) v3	carcucB0020
Carg05950	Bottle gourd (USVL1VR-Ls)	carlsiB015
Carg05950	Melon (DHL92) v3.5.1	carmeB0025
Carg05950	Melon (DHL92) v3.6.1	carmedB0026
Carg05950	Watermelon (Charleston Gray)	carwcgB0026
Carg05950	Watermelon (97103) v1	carwmB0019
Carg05950	Watermelon (97103) v2	carwmbB0021
Carg05950	Wax gourd	carwgoB0025