CmoCh04G030030 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G030030
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Hypoxia-responsive family protein
Location	Cmo_Chr04 : 21135280 .. 21135923 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATTTTCTTTCCCATAACATTATATATGAATTCTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTCTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGTAAACACACGATATCATTCAATAGAGACCATGATATCCATTTTTTTCGTTAAAACTCAAATGGGTTATCTTATTTTATAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAATGAGAAGAAAGGCGTTGCCGATCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGATTAGCTGATGACGTCGGGTTCTTGGGGGATCAAATCAGTTTGTGTAAATGAAATGAAGGATGTTAAATTTGATCCTTTTAATTGATGTGTCTGTGGCCGTAAGTGGCAAAGCTTTATGCTCGGTGTCGGCGAATTGTTAATCCTTAAATAAAATAAAAGAAAATAAAATAAAAGAATGAG

mRNA sequence

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATTTTCTTTCCCATAACATTATATATGAATTCTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTCTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAATGAGAAGAAAGGCGTTGCCGATCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAGGATTGGCGGCGCACCCGGGACGGAAAGGGAATGGATTAGCTGATGACGTCGGGTTCTTGGGGGATCAAATCAGTTTGTGTAAATGAAATGAAGGATGTTAAATTTGATCCTTTTAATTGATGTGTCTGTGGCCGTAAGTGGCAAAGCTTTATGCTCGGTGTCGGCGAATTGTTAATCCTTAAATAAAATAAAAGAAAATAAAATAAAAGAATGAG

Coding sequence (CDS)

ATGGAAGCCATTCAAGCTTGGATTTCTGAACACAAACTCACCAGCATTGGTTTGTCTCCTCCTTTCAAGCATCCTCTGTTTTCCTTCTATTTTCTTTCCCATAACATTATATATGAATTCTTTCGTGTAGGAGCTCTGTGGGCGTCTGGGATTGGAGCCTCGCTGGTCTACACAAGATCAAGAACTCCCCTGAAGCCAAGTCTCCGGCTTATCCATGCCAGGATGCATGCTCAGGCTTTGACATTGGCGGTTCTTTCCGGCGCCGCCGTCTACCACTACTACGAGAATGAGAAGAAAGGCGTTGCCGATCGAACCGAGGTTTCCGCTTCCGCCGTGCCGGGGAAGTAG

Homology

[Close]

BLAST of CmoCh04G030030 vs. TrEMBL
Match: A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-25
Identity = 71/115 (61.74%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
           MEAIQAW+SEHKLT+I                           GALWASGIGASL YTRS
Sbjct: 1   MEAIQAWVSEHKLTTI---------------------------GALWASGIGASLAYTRS 60

Query: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVADRTEVSASAVPGK 116
           RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+N  K   DR+E    +  GK
Sbjct: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDN--KIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CmoCh04G030030 vs. TrEMBL
Match: A0A067JNW4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.5e-22
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
           ME +Q+W+S+HKLTSIG                           ALWA+ +G SL YTR+
Sbjct: 1   MEGLQSWVSKHKLTSIG---------------------------ALWATAVGGSLAYTRT 60

Query: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVA 103
           RTPLKPSLRLIHARMHAQA+TLAVLSGAA+YHYYE +++ VA
Sbjct: 61  RTPLKPSLRLIHARMHAQAITLAVLSGAAIYHYYEKQEENVA 75

[Close]

BLAST of CmoCh04G030030 vs. TrEMBL
Match: A0A061FYY0_THECC (Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.0e-21
Identity = 61/96 (63.54%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 1  MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVY-TR 60
          MEAIQ+W+SEHKLTSIG                           A+WAS IGASL Y TR
Sbjct: 1  MEAIQSWVSEHKLTSIG---------------------------AIWASAIGASLAYNTR 60

Query: 61 SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE 96
          +RTPLKPSLRLIHARMHAQALTLAVLSGAA YHYYE
Sbjct: 61 ARTPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYE 69

[Close]

BLAST of CmoCh04G030030 vs. TrEMBL
Match: A0A067DTH2_CITSI (Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-21
Identity = 57/95 (60.00%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1  MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
          MEAIQ+W+S+HKLTSIG                           A+WAS IGASL YT++
Sbjct: 11 MEAIQSWVSDHKLTSIG---------------------------AVWASAIGASLAYTKT 70

Query: 61 RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE 96
          RTPLKPSLRLIHARMHAQA+TL VLSGAA YHYYE
Sbjct: 71 RTPLKPSLRLIHARMHAQAITLVVLSGAAAYHYYE 78

[Close]

BLAST of CmoCh04G030030 vs. TrEMBL
Match: V4TBZ6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.9e-21
Identity = 57/95 (60.00%), Postives = 64/95 (67.37%), Query Frame = 1


Query: 1  MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
          MEAIQ+W+S+HKLTSIG                           A+WAS IGASL YT++
Sbjct: 1  MEAIQSWVSDHKLTSIG---------------------------AVWASAIGASLAYTKT 60

Query: 61 RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE 96
          RTPLKPSLRLIHARMHAQA+TL VLSGAA YHYYE
Sbjct: 61 RTPLKPSLRLIHARMHAQAITLVVLSGAAAYHYYE 68

[Close]

BLAST of CmoCh04G030030 vs. TAIR10
Match: AT5G27760.1 (AT5G27760.1 Hypoxia-responsive family protein)

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-13
Identity = 42/101 (41.58%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 4   IQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRSRTP 63
           I+ WI EHKL +                           VG LW SGI  S+ Y  S+  
Sbjct: 11  IREWIIEHKLRT---------------------------VGCLWLSGISGSIAYNWSKPA 70

Query: 64  LKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVADR 105
           +K S+R+IHAR+HAQALTLA L+GAA   YY++ K G  DR
Sbjct: 71  MKTSVRIIHARLHAQALTLAALAGAAAVEYYDH-KSGATDR 83

[Close]

BLAST of CmoCh04G030030 vs. TAIR10
Match: AT3G05550.1 (AT3G05550.1 Hypoxia-responsive family protein)

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-13
Identity = 38/96 (39.58%), Postives = 53/96 (55.21%), Query Frame = 1


Query: 2  EAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRSR 61
          E I+ W+S+HKL +                           VG LW SGI  S+ Y  S+
Sbjct: 9  EEIRKWVSDHKLRT---------------------------VGCLWLSGITGSIAYNWSQ 68

Query: 62 TPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENE 98
            +K S+++IHAR+HAQALTLA L+GAAV  YY+++
Sbjct: 69 PAMKTSVKIIHARLHAQALTLAALAGAAVVEYYDHK 77

[Close]

BLAST of CmoCh04G030030 vs. NCBI nr
Match: gi|449441262|ref|XP_004138401.1| (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 71/115 (61.74%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
           MEAIQAW+SEHKLT+I                           GALWASGIGASL YTRS
Sbjct: 1   MEAIQAWVSEHKLTTI---------------------------GALWASGIGASLAYTRS 60

Query: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVADRTEVSASAVPGK 116
           RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+N  K   DR+E    +  GK
Sbjct: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDN--KIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CmoCh04G030030 vs. NCBI nr
Match: gi|659113791|ref|XP_008456757.1| (PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 70/115 (60.87%), Postives = 76/115 (66.09%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
           MEAIQAW+SEHKLT+IG                           ALWASG+GASL YTRS
Sbjct: 1   MEAIQAWVSEHKLTTIG---------------------------ALWASGMGASLAYTRS 60

Query: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVADRTEVSASAVPGK 116
           RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYY+N  K   DR+E    +  GK
Sbjct: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYDN--KFGNDRSEAPPVSRGGK 86

[Close]

BLAST of CmoCh04G030030 vs. NCBI nr
Match: gi|802778615|ref|XP_012091193.1| (PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 57/102 (55.88%), Postives = 69/102 (67.65%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVYTRS 60
           ME +Q+W+S+HKLTSIG                           ALWA+ +G SL YTR+
Sbjct: 1   MEGLQSWVSKHKLTSIG---------------------------ALWATAVGGSLAYTRT 60

Query: 61  RTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVA 103
           RTPLKPSLRLIHARMHAQA+TLAVLSGAA+YHYYE +++ VA
Sbjct: 61  RTPLKPSLRLIHARMHAQAITLAVLSGAAIYHYYEKQEENVA 75

[Close]

BLAST of CmoCh04G030030 vs. NCBI nr
Match: gi|502130134|ref|XP_004500542.1| (PREDICTED: uncharacterized protein LOC101488764 [Cicer arietinum])

HSP 1 Score: 110.5 bits (275), Expect = 1.9e-21
Identity = 61/104 (58.65%), Postives = 71/104 (68.27%), Query Frame = 1


Query: 1   MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLV-YTR 60
           MEA+Q+W+S +KLTSIG                           ALWASGIGASLV Y+R
Sbjct: 1   MEAVQSWVSNNKLTSIG---------------------------ALWASGIGASLVAYSR 60

Query: 61  SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENEKKGVAD 104
            ++P+KPSLRLIHARMHAQALTLAVLSGAA YHYYEN +K +AD
Sbjct: 61  VKSPMKPSLRLIHARMHAQALTLAVLSGAAAYHYYENHQKPLAD 77

[Close]

BLAST of CmoCh04G030030 vs. NCBI nr
Match: gi|590569940|ref|XP_007011209.1| (Hypoxia-responsive family protein [Theobroma cacao])

HSP 1 Score: 109.4 bits (272), Expect = 4.3e-21
Identity = 61/96 (63.54%), Postives = 65/96 (67.71%), Query Frame = 1


Query: 1  MEAIQAWISEHKLTSIGLSPPFKHPLFSFYFLSHNIIYEFFRVGALWASGIGASLVY-TR 60
          MEAIQ+W+SEHKLTSIG                           A+WAS IGASL Y TR
Sbjct: 1  MEAIQSWVSEHKLTSIG---------------------------AIWASAIGASLAYNTR 60

Query: 61 SRTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYE 96
          +RTPLKPSLRLIHARMHAQALTLAVLSGAA YHYYE
Sbjct: 61 ARTPLKPSLRLIHARMHAQALTLAVLSGAAAYHYYE 69

The following BLAST results are available for this feature:

BLAST of CmoCh04G030030 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G030030 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4_CUCSA	4.4e-25	61.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1	[more]
A0A067JNW4_JATCU	3.5e-22	55.88	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03356 PE=4 SV=1	[more]
A0A061FYY0_THECC	3.0e-21	63.54	Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1	[more]
A0A067DTH2_CITSI	3.9e-21	60.00	Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048348mg PE=4 S...	[more]
V4TBZ6_9ROSI	3.9e-21	60.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033224mg PE=4 SV=1	[more]

BLAST of CmoCh04G030030 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G27760.1	2.0e-13	41.58	Hypoxia-responsive family protein	[more]
AT3G05550.1	6.0e-13	39.58	Hypoxia-responsive family protein	[more]

BLAST of CmoCh04G030030 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441262\|ref\|XP_004138401.1\|	6.4e-25	61.74	PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus]	[more]
gi\|659113791\|ref\|XP_008456757.1\|	1.4e-24	60.87	PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo...	[more]
gi\|802778615\|ref\|XP_012091193.1\|	5.1e-22	55.88	PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]	[more]
gi\|502130134\|ref\|XP_004500542.1\|	1.9e-21	58.65	PREDICTED: uncharacterized protein LOC101488764 [Cicer arietinum]	[more]
gi\|590569940\|ref\|XP_007011209.1\|	4.3e-21	63.54	Hypoxia-responsive family protein [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0097249	mitochondrial respiratory chain supercomplex
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G030030.1	CmoCh04G030030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 43..86 score: 1.
IPR007667	Hypoxia induced protein, domain	PROFILE	PS51503	HIG1	coord: 1..103 score: 13
None	No IPR available	PANTHER	PTHR28018	FAMILY NOT NAMED	coord: 1..17 score: 7.2E-35coord: 45..106 score: 7.2
None	No IPR available	PANTHER	PTHR28018:SF3	SUBFAMILY NOT NAMED	coord: 1..17 score: 7.2E-35coord: 45..106 score: 7.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G030030	Cucsa.326130	Cucumber (Gy14) v1	cgycmoB0903
CmoCh04G030030	CmaCh04G028760	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G030030	Cla006620	Watermelon (97103) v1	cmowmB731
CmoCh04G030030	Csa6G013920	Cucumber (Chinese Long) v2	cmocuB759
CmoCh04G030030	MELO3C019992	Melon (DHL92) v3.5.1	cmomeB668
CmoCh04G030030	ClCG11G005830	Watermelon (Charleston Gray)	cmowcgB621
CmoCh04G030030	CSPI06G02000	Wild cucumber (PI 183967)	cmocpiB768
CmoCh04G030030	Lsi03G002780	Bottle gourd (USVL1VR-Ls)	cmolsiB645
CmoCh04G030030	Cp4.1LG13g07490	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G030030	Cp4.1LG01g21900	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G030030	MELO3C019992.2	Melon (DHL92) v3.6.1	cmomedB756
CmoCh04G030030	CsaV3_6G002150	Cucumber (Chinese Long) v3	cmocucB0899
CmoCh04G030030	Cla97C11G212740	Watermelon (97103) v2	cmowmbB697
CmoCh04G030030	Bhi04G001852	Wax gourd	cmowgoB0857
CmoCh04G030030	CsGy6G002080	Cucumber (Gy14) v2	cgybcmoB816
CmoCh04G030030	Carg02146	Silver-seed gourd	carcmoB0370
CmoCh04G030030	Carg05950	Silver-seed gourd	carcmoB0033

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh04G030030	CmoCh15G001670	Cucurbita moschata (Rifu)	cmocmoB261

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G030030	Cucurbita moschata (Rifu)	cmocmoB449
CmoCh04G030030	Cucurbita moschata (Rifu)	cmocmoB466
CmoCh04G030030	Cucumber (Gy14) v1	cgycmoB0350
CmoCh04G030030	Cucurbita maxima (Rimu)	cmacmoB308
CmoCh04G030030	Cucurbita maxima (Rimu)	cmacmoB659
CmoCh04G030030	Cucurbita maxima (Rimu)	cmacmoB734
CmoCh04G030030	Cucurbita maxima (Rimu)	cmacmoB736
CmoCh04G030030	Wild cucumber (PI 183967)	cmocpiB719
CmoCh04G030030	Cucumber (Chinese Long) v2	cmocuB709
CmoCh04G030030	Melon (DHL92) v3.5.1	cmomeB701
CmoCh04G030030	Watermelon (Charleston Gray)	cmowcgB650
CmoCh04G030030	Watermelon (97103) v1	cmowmB714
CmoCh04G030030	Cucurbita pepo (Zucchini)	cmocpeB654
CmoCh04G030030	Bottle gourd (USVL1VR-Ls)	cmolsiB629
CmoCh04G030030	Cucumber (Gy14) v2	cgybcmoB525
CmoCh04G030030	Melon (DHL92) v3.6.1	cmomedB795
CmoCh04G030030	Silver-seed gourd	carcmoB0863
CmoCh04G030030	Silver-seed gourd	carcmoB0925
CmoCh04G030030	Cucumber (Chinese Long) v3	cmocucB0838
CmoCh04G030030	Watermelon (97103) v2	cmowmbB723
CmoCh04G030030	Wax gourd	cmowgoB0879