CSPI06G02000 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G02000
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Hypoxia-responsive family protein
Location	Chr6 : 1495002 .. 1495693 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCTCCATCAAACTCATTAGTGTTTTTGTTCAGTAAACAGCAGCAACAACAATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGTACTTATTTCCCATTTCCCAATCTTTTTTCTTTACTCTCTTCCTAAATCTAATCACTTTGTTTTTGGGTTATACATTATAGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGTTTAATTCCTCAAACTACTCTTCTCTTCTCTACATTTAGTATTGTGCAAAATAAAATAGTCATCATAGTGTATGTCCCCATATATCCCATGAGTATAGAGTAAATAGTCGTAGTGTAACTATTTCCCATTCTCTTTTTCTTATTCAAATTGAGAATGAAATATTAATTTGGTTTTGTTTGTAATTAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGAAAGAATGGATAAGCGGAGAGTGGTATTGTTCTAAAGGAGGGATGAAGGATGAATCATTTTGTGTAAATGAAATTAAGGATGTTGATGAAAGATTATTAAGTTTGAATTA

mRNA sequence

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

Coding sequence (CDS)

ATGGAAGCTATTCAAGCTTGGGTTTCAGAACACAAACTCACCACCATTGGAGCTCTGTGGGCATCTGGGATTGGAGCATCGCTGGCCTATACCCGATCAAGAACTCCCCTCAAGCCAAGTCTCCGCCTTATTCATGCCAGGATGCATGCTCAGGCATTGACCTTAGCGGTTCTTTCCGGCGCGGCCGTCTACCACTACTACGACAACAAAATTGGGAGAGACCGATCTGAAGCTCCTCCGGTTTCAGGGGGAGGGAAATGA

Homology

[Close]

BLAST of CSPI06G02000 vs. TrEMBL
Match: A0A0A0K7T4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 7.5e-41
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CSPI06G02000 vs. TrEMBL
Match: W9QXG0_9ROSA (BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.3e-26
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRDRSE 78
          GAA+YHYY+ ++G   +E
Sbjct: 61 GAAIYHYYEKRVGEKDAE 78

[Close]

BLAST of CSPI06G02000 vs. TrEMBL
Match: A0A061FYY0_THECC (Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.2e-25
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGA+WAS IGASLAY TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRD 75
          GAA YHYY+    ++
Sbjct: 61 GAAAYHYYEKSSSKE 75

[Close]

BLAST of CSPI06G02000 vs. TrEMBL
Match: I3TA54_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 58/71 (81.69%), Postives = 70/71 (98.59%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASL-AYTRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          ME++Q+WVSEHKLT+IGALWASGIGA+L AY+R+++P+KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MESVQSWVSEHKLTSIGALWASGIGATLLAYSRTKSPMKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNK 71
          GAAVYHYY+N+
Sbjct: 61 GAAVYHYYENR 71

[Close]

BLAST of CSPI06G02000 vs. TrEMBL
Match: A0A059BI10_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03116 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.6e-25
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSEHKL +IG LWAS IGASLAY+R+++PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLASIGGLWASAIGASLAYSRAKSPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSE 78
          AA YHYY+ +    R +
Sbjct: 61 AAAYHYYEQRSNEPRRD 77

[Close]

BLAST of CSPI06G02000 vs. TAIR10
Match: AT3G05550.1 (AT3G05550.1 Hypoxia-responsive family protein)

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-19
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 2  EAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS+HKL T+G LW SGI  S+AY  S+  +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYDNK 71
          AV  YYD+K
Sbjct: 69 AVVEYYDHK 77

[Close]

BLAST of CSPI06G02000 vs. TAIR10
Match: AT5G27760.1 (AT5G27760.1 Hypoxia-responsive family protein)

HSP 1 Score: 89.7 bits (221), Expect = 9.4e-19
Identity = 41/69 (59.42%), Postives = 52/69 (75.36%), Query Frame = 1


Query: 4  IQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ EHKL T+G LW SGI  S+AY  S+  +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYDNKIG 73
            YYD+K G
Sbjct: 71 VEYYDHKSG 79

[Close]

BLAST of CSPI06G02000 vs. NCBI nr
Match: gi|449441262|ref|XP_004138401.1| (PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus])

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNKIGRDRSEAPPVSGGGK
Sbjct: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 86

[Close]

BLAST of CSPI06G02000 vs. NCBI nr
Match: gi|659113791|ref|XP_008456757.1| (PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo])

HSP 1 Score: 166.4 bits (420), Expect = 2.2e-38
Identity = 82/86 (95.35%), Postives = 83/86 (96.51%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSEHKLTTIGALWASG+GASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSEAPPVSGGGK 87
          AAVYHYYDNK G DRSEAPPVS GGK
Sbjct: 61 AAVYHYYDNKFGNDRSEAPPVSRGGK 86

[Close]

BLAST of CSPI06G02000 vs. NCBI nr
Match: gi|703063828|ref|XP_010087051.1| (BTB/POZ domain-containing protein [Morus notabilis])

HSP 1 Score: 125.9 bits (315), Expect = 3.3e-26
Identity = 62/78 (79.49%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTR-SRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGALWASGIGASLAY   SR+P KPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYNSGSRSPTKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRDRSE 78
          GAA+YHYY+ ++G   +E
Sbjct: 61 GAAIYHYYEKRVGEKDAE 78

[Close]

BLAST of CSPI06G02000 vs. NCBI nr
Match: gi|590569940|ref|XP_007011209.1| (Hypoxia-responsive family protein [Theobroma cacao])

HSP 1 Score: 123.6 bits (309), Expect = 1.7e-25
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAY-TRSRTPLKPSLRLIHARMHAQALTLAVLS 60
          MEAIQ+WVSEHKLT+IGA+WAS IGASLAY TR+RTPLKPSLRLIHARMHAQALTLAVLS
Sbjct: 1  MEAIQSWVSEHKLTSIGAIWASAIGASLAYNTRARTPLKPSLRLIHARMHAQALTLAVLS 60

Query: 61 GAAVYHYYDNKIGRD 75
          GAA YHYY+    ++
Sbjct: 61 GAAAYHYYEKSSSKE 75

[Close]

BLAST of CSPI06G02000 vs. NCBI nr
Match: gi|702425042|ref|XP_010067579.1| (PREDICTED: uncharacterized protein LOC104454438 [Eucalyptus grandis])

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-25
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVSEHKL +IG LWAS IGASLAY+R+++PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLASIGGLWASAIGASLAYSRAKSPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYDNKIGRDRSE 78
          AA YHYY+ +    R +
Sbjct: 61 AAAYHYYEQRSNEPRRD 77

The following BLAST results are available for this feature:

BLAST of CSPI06G02000 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G02000 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4_CUCSA	7.5e-41	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G013920 PE=4 SV=1	[more]
W9QXG0_9ROSA	2.3e-26	79.49	BTB/POZ domain-containing protein OS=Morus notabilis GN=L484_012295 PE=4 SV=1	[more]
A0A061FYY0_THECC	1.2e-25	81.33	Hypoxia-responsive family protein OS=Theobroma cacao GN=TCM_045421 PE=4 SV=1	[more]
I3TA54_LOTJA	2.6e-25	81.69	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A059BI10_EUCGR	2.6e-25	75.32	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G03116 PE=4 SV=1	[more]

BLAST of CSPI06G02000 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05550.1	5.5e-19	60.87	Hypoxia-responsive family protein	[more]
AT5G27760.1	9.4e-19	59.42	Hypoxia-responsive family protein	[more]

BLAST of CSPI06G02000 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449441262\|ref\|XP_004138401.1\|	1.1e-40	100.00	PREDICTED: uncharacterized protein LOC101218681 [Cucumis sativus]	[more]
gi\|659113791\|ref\|XP_008456757.1\|	2.2e-38	95.35	PREDICTED: respiratory supercomplex factor 2 homolog C1565.01-like [Cucumis melo...	[more]
gi\|703063828\|ref\|XP_010087051.1\|	3.3e-26	79.49	BTB/POZ domain-containing protein [Morus notabilis]	[more]
gi\|590569940\|ref\|XP_007011209.1\|	1.7e-25	81.33	Hypoxia-responsive family protein [Theobroma cacao]	[more]
gi\|702425042\|ref\|XP_010067579.1\|	3.7e-25	75.32	PREDICTED: uncharacterized protein LOC104454438 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007667	Hypoxia_induced_domain

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0033617	mitochondrial respiratory chain complex IV assembly
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0097249	mitochondrial respiratory chain supercomplex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G02000.1	CSPI06G02000.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 10..59 score: 5.
IPR007667	Hypoxia induced protein, domain	PROFILE	PS51503	HIG1	coord: 1..76 score: 20
None	No IPR available	PANTHER	PTHR28018	FAMILY NOT NAMED	coord: 1..78 score: 1.3
None	No IPR available	PANTHER	PTHR28018:SF3	SUBFAMILY NOT NAMED	coord: 1..78 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G02000	Cla006620	Watermelon (97103) v1	cpiwmB552
CSPI06G02000	Csa6G013920	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G02000	MELO3C019992	Melon (DHL92) v3.5.1	cpimeB476
CSPI06G02000	ClCG11G005830	Watermelon (Charleston Gray)	cpiwcgB450
CSPI06G02000	Lsi03G002780	Bottle gourd (USVL1VR-Ls)	cpilsiB451
CSPI06G02000	MELO3C019992.2	Melon (DHL92) v3.6.1	cpimedB464
CSPI06G02000	CsaV3_6G002150	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G02000	Cla97C11G212740	Watermelon (97103) v2	cpiwmbB447
CSPI06G02000	Bhi04G001852	Wax gourd	cpiwgoB591
CSPI06G02000	Cucsa.326130	Cucumber (Gy14) v1	cgycpiB491
CSPI06G02000	CmaCh04G028760	Cucurbita maxima (Rimu)	cmacpiB777
CSPI06G02000	CmoCh04G030030	Cucurbita moschata (Rifu)	cmocpiB768
CSPI06G02000	CmoCh15G001670	Cucurbita moschata (Rifu)	cmocpiB305
CSPI06G02000	Cp4.1LG13g07490	Cucurbita pepo (Zucchini)	cpecpiB199
CSPI06G02000	Cp4.1LG01g21900	Cucurbita pepo (Zucchini)	cpecpiB461
CSPI06G02000	CsGy6G002080	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G02000	Carg05950	Silver-seed gourd	carcpiB0024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G02000	Wild cucumber (PI 183967)	cpicpiB159
CSPI06G02000	Cucumber (Gy14) v1	cgycpiB184
CSPI06G02000	Cucumber (Gy14) v1	cgycpiB213
CSPI06G02000	Cucurbita maxima (Rimu)	cmacpiB314
CSPI06G02000	Cucurbita maxima (Rimu)	cmacpiB690
CSPI06G02000	Cucurbita maxima (Rimu)	cmacpiB783
CSPI06G02000	Cucurbita maxima (Rimu)	cmacpiB784
CSPI06G02000	Cucurbita moschata (Rifu)	cmocpiB682
CSPI06G02000	Cucurbita moschata (Rifu)	cmocpiB773
CSPI06G02000	Cucumber (Chinese Long) v2	cpicuB298
CSPI06G02000	Cucumber (Chinese Long) v2	cpicuB308
CSPI06G02000	Melon (DHL92) v3.5.1	cpimeB454
CSPI06G02000	Melon (DHL92) v3.5.1	cpimeB517
CSPI06G02000	Watermelon (Charleston Gray)	cpiwcgB491
CSPI06G02000	Watermelon (Charleston Gray)	cpiwcgB516
CSPI06G02000	Watermelon (97103) v1	cpiwmB497
CSPI06G02000	Watermelon (97103) v1	cpiwmB502
CSPI06G02000	Watermelon (97103) v1	cpiwmB527
CSPI06G02000	Cucurbita pepo (Zucchini)	cpecpiB082
CSPI06G02000	Cucurbita pepo (Zucchini)	cpecpiB466
CSPI06G02000	Bottle gourd (USVL1VR-Ls)	cpilsiB437
CSPI06G02000	Bottle gourd (USVL1VR-Ls)	cpilsiB465
CSPI06G02000	Melon (DHL92) v3.6.1	cpimedB500
CSPI06G02000	Cucumber (Gy14) v2	cgybcpiB187
CSPI06G02000	Silver-seed gourd	carcpiB0301
CSPI06G02000	Silver-seed gourd	carcpiB0709
CSPI06G02000	Cucumber (Chinese Long) v3	cpicucB348
CSPI06G02000	Cucumber (Chinese Long) v3	cpicucB357
CSPI06G02000	Watermelon (97103) v2	cpiwmbB483
CSPI06G02000	Watermelon (97103) v2	cpiwmbB508
CSPI06G02000	Wax gourd	cpiwgoB632