Cucsa.259150 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.259150
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionPhotosynthetic NDH subcomplex L 2
Locationscaffold02229 : 5776960 .. 5777470 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGGTATGTACTTTTGTTACTCTTTGATTTTACTAGTTGAATACTTACTAATTAAATTTAGTGGAAAGTCTAATTATTGATTAATGTTTTTCTTATTGAAGATTAATTTGATTAATTTGGATGATGATGTGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

mRNA sequence

CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Coding sequence (CDS)

CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Protein sequence

QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA*
Homology
[Close]
BLAST of Cucsa.259150 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-49
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  +REML+  SWRYVIFYIRLK AYL
Sbjct: 67  EKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYL 126

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDL  AM  LP++RRND+V+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSID++V
Sbjct: 127 SQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

Query: 121 ALLA 125
             LA
Sbjct: 187 EFLA 190

[Close]
BLAST of Cucsa.259150 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]
BLAST of Cucsa.259150 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]
BLAST of Cucsa.259150 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]
BLAST of Cucsa.259150 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]
BLAST of Cucsa.259150 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.5e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 64  QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 123

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 124 SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 183

Query: 121 ALLA 125
           ALLA
Sbjct: 184 ALLA 187

[Close]
BLAST of Cucsa.259150 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.2e-53
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]
BLAST of Cucsa.259150 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.3e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAYL
Sbjct: 65  ENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAYL 124

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 125 SQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 184

Query: 121 ALLA 125
           A+LA
Sbjct: 185 AMLA 188

[Close]
BLAST of Cucsa.259150 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-52
Identity = 101/123 (82.11%), Postives = 114/123 (92.68%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF++ER+FEPGLS E+A ARIKQTAEGLHS+REML+  SWRYV+FYIRLK AYL
Sbjct: 78  ENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREMLDNMSWRYVMFYIRLKQAYL 137

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQAR+ ++VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 138 SQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 197

Query: 121 ALL 124
           ALL
Sbjct: 198 ALL 200

[Close]
BLAST of Cucsa.259150 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.9e-52
Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYE TLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDLYVKTANELVDNMAEFDYYVRTPKVYESYLYYEMTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]
BLAST of Cucsa.259150 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 194.5 bits (493), Expect = 3.9e-50
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  +REML+  SWRYVIFYIRLK AYL
Sbjct: 67  EKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYL 126

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDL  AM  LP++RRND+V+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSID++V
Sbjct: 127 SQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

Query: 121 ALLA 125
             LA
Sbjct: 187 EFLA 190

[Close]
BLAST of Cucsa.259150 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]
BLAST of Cucsa.259150 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1 

Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]
BLAST of Cucsa.259150 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 29/121 (23.97%), Postives = 59/121 (48.76%), Query Frame = 1 

Query: 4   GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 63
           GT +FIK+  +   +  +  + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 64  LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 123
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 124 A 125
           A
Sbjct: 220 A 220

[Close]
BLAST of Cucsa.259150 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.4e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 64  QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 123

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 124 SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 183

Query: 121 ALLA 125
           ALLA
Sbjct: 184 ALLA 187

[Close]
BLAST of Cucsa.259150 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 4.2e-62
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 63  QSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 122

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 123 SQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 182

Query: 121 ALLA 125
           ALLA
Sbjct: 183 ALLA 186

[Close]
BLAST of Cucsa.259150 vs. NCBI nr
Match: gi|1009154202|ref|XP_015895040.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 107/124 (86.29%), Postives = 116/124 (93.55%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           Q+WGT SFI+ER+FEPGLS E+AVARIKQTAEGLHSIR+MLE+ SWRYVIFYIRLKSAYL
Sbjct: 71  QNWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLESMSWRYVIFYIRLKSAYL 130

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP+ARR D+ K ANELVDNMAE DYYVRTPKVYESY+YYEKTLKSIDDLV
Sbjct: 131 SQDLKNAMTTLPEARRQDYAKVANELVDNMAEFDYYVRTPKVYESYVYYEKTLKSIDDLV 190

Query: 121 ALLA 125
           ALLA
Sbjct: 191 ALLA 194

[Close]
BLAST of Cucsa.259150 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii])

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]
BLAST of Cucsa.259150 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1 

Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAYL
Sbjct: 65  ENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAYL 124

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 125 SQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 184

Query: 121 ALLA 125
           A+LA
Sbjct: 185 AMLA 188

The following BLAST results are available for this feature:
BLAST of Cucsa.259150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PNSL2_ARATH6.9e-4975.00Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t... [more]
PSBQ2_MAIZE1.3e-1027.83Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV... [more]
PSBQ2_ARATH2.2e-1027.83Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
PSBQ1_MAIZE3.7e-1026.96Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV... [more]
PSBQ1_ARATH6.3e-1026.09Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P... [more]
BLAST of Cucsa.259150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3W3_CUCSA4.5e-63100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1[more]
A0A0D2SAU6_GOSRA7.2e-5382.11Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1[more]
D7TN65_VITVI9.3e-5383.06Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=... [more]
A0A061EB55_THECC2.1e-5282.11PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1[more]
A0A0B0NLL7_GOSAR7.9e-5281.30Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum G... [more]
BLAST of Cucsa.259150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14150.13.9e-5075.00 PsbQ-like 2[more]
AT4G05180.11.2e-1127.83 photosystem II subunit Q-2[more]
AT4G21280.23.5e-1126.09 photosystem II subunit QA[more]
AT3G01440.13.1e-0723.97 PsbQ-like 1[more]
BLAST of Cucsa.259150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432058|ref|XP_004133817.1|6.4e-63100.00PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu... [more]
gi|659075001|ref|XP_008437911.1|4.2e-6298.39PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo][more]
gi|1009154202|ref|XP_015895040.1|1.4e-5486.29PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Zizi... [more]
gi|823265558|ref|XP_012465506.1|1.0e-5282.11PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Goss... [more]
gi|225425642|ref|XP_002272064.1|1.3e-5283.06PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR008797PSII_PsbQ
IPR023222PsbQ-like_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: Cellular Component
TermDefinition
GO:0009523photosystem II
GO:0009654photosystem II oxygen evolving complex
GO:0019898extrinsic component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0015979 photosynthesis
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009344 nitrite reductase complex [NAD(P)H]
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.259150.1Cucsa.259150.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 2..124
score: 1.0
IPR023222PsbQ-like domainGENE3DG3DSA:1.20.120.290coord: 2..124
score: 3.5
IPR023222PsbQ-like domainunknownSSF101112Oxygen-evolving enhancer protein 3,coord: 13..124
score: 7.45
NoneNo IPR availablePANTHERPTHR33399FAMILY NOT NAMEDcoord: 1..124
score: 1.0
NoneNo IPR availablePANTHERPTHR33399:SF5PSBQ-LIKE PROTEIN 1, CHLOROPLASTICcoord: 1..124
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.259150Cla021166Watermelon (97103) v1cgywmB479
Cucsa.259150Csa3G119660Cucumber (Chinese Long) v2cgycuB366
Cucsa.259150MELO3C006032Melon (DHL92) v3.5.1cgymeB439
Cucsa.259150ClCG05G000900Watermelon (Charleston Gray)cgywcgB451
Cucsa.259150CSPI03G08010Wild cucumber (PI 183967)cgycpiB383
Cucsa.259150Lsi05G021130Bottle gourd (USVL1VR-Ls)cgylsiB415
Cucsa.259150MELO3C006032.2Melon (DHL92) v3.6.1cgymedB432
Cucsa.259150CsaV3_3G008130Cucumber (Chinese Long) v3cgycucB387
Cucsa.259150Cla97C05G081100Watermelon (97103) v2cgywmbB452
Cucsa.259150Bhi01G000341Wax gourdcgywgoB514
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.259150Melon (DHL92) v3.6.1cgymedB420
Cucsa.259150Silver-seed gourdcarcgyB1110
Cucsa.259150Cucumber (Chinese Long) v3cgycucB391
Cucsa.259150Cucumber (Chinese Long) v3cgycucB393
Cucsa.259150Watermelon (97103) v2cgywmbB445
Cucsa.259150Watermelon (97103) v2cgywmbB450
Cucsa.259150Wax gourdcgywgoB507
Cucsa.259150Wax gourdcgywgoB519
Cucsa.259150Cucumber (Gy14) v1cgycgyB055
Cucsa.259150Cucumber (Gy14) v1cgycgyB116
Cucsa.259150Cucurbita maxima (Rimu)cgycmaB0700
Cucsa.259150Cucurbita maxima (Rimu)cgycmaB0709
Cucsa.259150Cucurbita maxima (Rimu)cgycmaB0724
Cucsa.259150Cucurbita maxima (Rimu)cgycmaB0728
Cucsa.259150Cucurbita moschata (Rifu)cgycmoB0700
Cucsa.259150Cucurbita moschata (Rifu)cgycmoB0703
Cucsa.259150Cucurbita moschata (Rifu)cgycmoB0712
Cucsa.259150Cucurbita moschata (Rifu)cgycmoB0718
Cucsa.259150Wild cucumber (PI 183967)cgycpiB385
Cucsa.259150Wild cucumber (PI 183967)cgycpiB387
Cucsa.259150Cucumber (Chinese Long) v2cgycuB367
Cucsa.259150Cucumber (Chinese Long) v2cgycuB369
Cucsa.259150Melon (DHL92) v3.5.1cgymeB426
Cucsa.259150Melon (DHL92) v3.5.1cgymeB438
Cucsa.259150Watermelon (Charleston Gray)cgywcgB446
Cucsa.259150Watermelon (Charleston Gray)cgywcgB449
Cucsa.259150Watermelon (97103) v1cgywmB477
Cucsa.259150Watermelon (97103) v1cgywmB481
Cucsa.259150Cucurbita pepo (Zucchini)cgycpeB0682
Cucsa.259150Cucurbita pepo (Zucchini)cgycpeB0685
Cucsa.259150Cucurbita pepo (Zucchini)cgycpeB0687
Cucsa.259150Bottle gourd (USVL1VR-Ls)cgylsiB413