Lsi05G021130 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G021130
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionOxygen-evolving enhancer 3-2, chloroplastic-like protein
Locationchr05 : 27995044 .. 27997534 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGACAAAGTGATAATACGTAAGGTTGTGAATGAATGGGAAGAGATGAGAAGGTAAGGCAAGGCCCACAAAGTGTGTGTGTGTGTTTTCCCTATGGAAATGAAATGTAAGAAGCCAAAAGAGTTTTATCTTCCAAGCCATGCCTGCCTTTGCCAACGCCAACACTCTCTCCTCCTCTTGGATTTCCACTCCCCACAAATGCCGCCACCGTCGTCGCCACCATTTTCCAATTGTCACCGCCTCCCTTTCCGCCCACCGCCGCGATATTGCGACAGCCCTTGCAGTGGTGGTTGGGCTGCAGGCCGCAGCAGCACCCCTCGCACTAGCCCAAAGCTGGGGCACGCGCTCGTTCATTAAGGAGCGATACTTTGAGCCCGGGCTATCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAGACCGCGGAAGGACTTCACAGCATTCGTGAGATGCTGGAAACCATGTCATGGAGATATGTGATATTCTACATTCGTTTGAAGTCGGCTTATCTATCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAGTGATTTTGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCTGAGGTATGTACTCTTTGTTTCGCGTTTCACATGTTTCATAACGTTTAAAATACAACGTAAATGTAAATATAAATGTTAAATGTAGGATCTTAAACGTATAGGAAAATTAAAAATTACACTTTGAGTTCTTACCTGAAGGAGATTTTGATATTCTAAAACGTGTTACGTTTGATTTTATTTGTGTTTTGATTATTAATTAGAGAAAATTGTTTGAATCCTATCTCGAAATTGGAATATTTTTTTTTTGGAAAACTACCTTTTTGATTTTTAGATTTTGGTTTAGTTTTCATTTGGTCCATAAATTTCAAAATATTACATTTTTAGTTCTTTTAAGTTTTGAGTTTCATTTCAATTGAATTTTTAGATTTCAAAATATTACAATTTTACCAATTGAGATTTGAGTATTGTTTTAATTTGATCCCTATGTTTCAAAATTTACACTTTTAGCCTTTATTTTTTACTAAATATTTATTTCAATATTTGGCGCTAATATCTATCCATTAATTTAAAATAATTATGAAGTGAAATTTTAAAATCAATTTTAACAAATTAATTAATTATAAGGAAAATTTTTACAAATAAAAAAAAATGTCAAACTATTTACATAAAATAGCAAAAAAATACTGATAGACATTGATAGACTTCTATCAGCATCTATCAGTGATAGACTTCTATCATTTCTATCACTGATAGATCCTGATAGACTTCTATCAGCGTCTATCACAACTATTTAAAATTTTTGCTATTTTGTGTAAATAGTTTACCTTATTTTTCTATTTTTAAAACTTTCCCCAATTATAATTCTTTGAAATTAATTAATAGATATTAACATTGAATATTAAAAAAAGTGCGTATTTAAGGATAATTATTCAAGGTTAAAAGTGTAAAATTTTGTAACTAAGGATCAAATTGTAACAAAACTCAAATCTCAAAGGTAAAAGTGTACCATTTTGAAACTTACAGACTAAATTGAAATCAAATTCAAAAGTTAAAAGGACTAAAATTATAACATTTTGAAACATAAAAACCAAATAGAAACTAAATCAAAAACTTAAAGGCTAAAAATGTATTTTTTTTTCTGATAAATATATATATATATATATATATTAAACAAAGTATGCTTTAGAATCTTTGAGGAAAGTATGCTTTAGAATCTGTGAGATTGTTGGAATTTAACATGGGTAATATAACTATTTTACTCTAGTTTATATAAATTCAAGAATATATGTAATAGTAAGATGTCCTGCTGACATTCTAATATAGTTTTATTTTAATAATTCCAAAATATGTGTGGATATTTTAAAATCTATGAAATGCAATAAAAATAGACAAAATAGATAAACAACGTTGAAATGTCAATAAGTGTTTTACTTGAGGTCTAGGTAGGCAAGTATATATTGTCCTAAATTTAGTCCATAGTCTAATTGATTAGTTTGATTTTGTGATTGCCATTCAACTTTGGATTTGGATTGATGTTTCAGTTGGATTATTACGTTCGCACGCCGAAGGTGTATGAGTCTTATTTGTATTATGAAAAGACATTGAAATCTATTGATGATCTGGTGGCTTTACTAGCATAGCTGCAAATAATATCTAACAATCTTCATCACAGATTGAATTAATGCATCAAAAGGAAGACTTGATCTTACGAGATTTTGATGTGTTGTGTTAAGATAATTTGGTAGTCTTTTATTATATAAATACATGTGTAAAAAATTTATTTGACAATAGTAATTAATCTAGAAATTATTTCTTCCATTTTCAAAAATTGAATACTTTTGAGGTTCTTGGATAACTTGGTTATATTTTTAAATTGTAACTGAGTCATTTGTCAATGATGAATGGGATTGAGAATTAGGAAGAGAATTGAACAAGTGTTATCTTGTAATGAG

mRNA sequence

GGACAAAGTGATAATACGTAAGGTTGTGAATGAATGGGAAGAGATGAGAAGGTAAGGCAAGGCCCACAAAGTGTGTGTGTGTGTTTTCCCTATGGAAATGAAATGTAAGAAGCCAAAAGAGTTTTATCTTCCAAGCCATGCCTGCCTTTGCCAACGCCAACACTCTCTCCTCCTCTTGGATTTCCACTCCCCACAAATGCCGCCACCGTCGTCGCCACCATTTTCCAATTGTCACCGCCTCCCTTTCCGCCCACCGCCGCGATATTGCGACAGCCCTTGCAGTGGTGGTTGGGCTGCAGGCCGCAGCAGCACCCCTCGCACTAGCCCAAAGCTGGGGCACGCGCTCGTTCATTAAGGAGCGATACTTTGAGCCCGGGCTATCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAGACCGCGGAAGGACTTCACAGCATTCGTGAGATGCTGGAAACCATGTCATGGAGATATGTGATATTCTACATTCGTTTGAAGTCGGCTTATCTATCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAGTGATTTTGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACGCCGAAGGTGTATGAGTCTTATTTGTATTATGAAAAGACATTGAAATCTATTGATGATCTGGTGGCTTTACTAGCATAGCTGCAAATAATATCTAACAATCTTCATCACAGATTGAATTAATGCATCAAAAGGAAGACTTGATCTTACGAGATTTTGATGTGTTGTGTTAAGATAATTTGGTAGTCTTTTATTATATAAATACATGTGTAAAAAATTTATTTGACAATAGTAATTAATCTAGAAATTATTTCTTCCATTTTCAAAAATTGAATACTTTTGAGGTTCTTGGATAACTTGGTTATATTTTTAAATTGTAACTGAGTCATTTGTCAATGATGAATGGGATTGAGAATTAGGAAGAGAATTGAACAAGTGTTATCTTGTAATGAG

Coding sequence (CDS)

ATGCCTGCCTTTGCCAACGCCAACACTCTCTCCTCCTCTTGGATTTCCACTCCCCACAAATGCCGCCACCGTCGTCGCCACCATTTTCCAATTGTCACCGCCTCCCTTTCCGCCCACCGCCGCGATATTGCGACAGCCCTTGCAGTGGTGGTTGGGCTGCAGGCCGCAGCAGCACCCCTCGCACTAGCCCAAAGCTGGGGCACGCGCTCGTTCATTAAGGAGCGATACTTTGAGCCCGGGCTATCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAGACCGCGGAAGGACTTCACAGCATTCGTGAGATGCTGGAAACCATGTCATGGAGATATGTGATATTCTACATTCGTTTGAAGTCGGCTTATCTATCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAGTGATTTTGTTAAGACTGCTAATGAGTTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGCACGCCGAAGGTGTATGAGTCTTATTTGTATTATGAAAAGACATTGAAATCTATTGATGATCTGGTGGCTTTACTAGCATAG

Protein sequence

MPAFANANTLSSSWISTPHKCRHRRRHHFPIVTASLSAHRRDIATALAVVVGLQAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Homology
[Close]
BLAST of Lsi05G021130 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 1.0e-48
Identity = 97/148 (65.54%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 40  RRDIATALAVVVGLQAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 99
           RR   T+L     +  A +     + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYY 159
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R++D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]
BLAST of Lsi05G021130 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.5e-78
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 1 

Query: 1   MPAFANAN--TLSSSWISTPHKCRHRRRHHFPIVTASLSAHRRDIATALAVVVGLQAAAA 60
           MP  ANAN  TL SS ISTPHK RHR   HFP++TASL  HRR IAT LA+VVGLQAA  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRP--HFPVITASLPIHRRHIATTLALVVGLQAATP 60

Query: 61  PLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRL 120
            +ALAQSWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRL
Sbjct: 61  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 120

Query: 121 KSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 180
           KSAYLSQDLKTAM+ LPQAR++DFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS
Sbjct: 121 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 180

Query: 181 IDDLVALLA 188
           IDDLVALLA
Sbjct: 181 IDDLVALLA 187

[Close]
BLAST of Lsi05G021130 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.4e-57
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 1 

Query: 1   MPAFANANTLSSSWISTPHKCRHRRRHHFPIVTASLSAH------RRDIATALAVVVGLQ 60
           M +F +  +LS + ++T    +H R    P   ASLS        RR ++T LA  + L 
Sbjct: 1   MSSFTSPTSLSCAQLTT---AQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALH 60

Query: 61  AAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIF 120
               PLALA++WGTRSF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIF
Sbjct: 61  GT--PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIF 120

Query: 121 YIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEK 180
           YIRLKSAYLSQDLK AM+ LP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEK
Sbjct: 121 YIRLKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEK 180

Query: 181 TLKSIDDLVALLA 188
           TLKSIDDLVA+LA
Sbjct: 181 TLKSIDDLVAMLA 188

[Close]
BLAST of Lsi05G021130 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 1.0e-55
Identity = 122/193 (63.21%), Postives = 145/193 (75.13%), Query Frame = 1 

Query: 1   MPAFANANTLSSSWISTPHKCRHRRRHHFPIVTASLSAH------RRDIATALAVVVG-L 60
           M  F N +TL     STP      R+   PI+ +SL         RR ++T     +G +
Sbjct: 1   MSIFTNTSTLLRLQTSTP------RKPSLPIIRSSLPVEENAIIRRRILSTLFTTSMGTI 60

Query: 61  QAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVI 120
              A PLALA++WG+RSF+ ERYFEPGLS E+AVARIRQTAEGLHS+REML+TMSWRYV+
Sbjct: 61  GLNATPLALAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVM 120

Query: 121 FYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYE 180
           FYIRLKSAYL+QDLK AMS LPQ R+  +VKTANEL+DNMAE DYYVRTPKVYESYLYYE
Sbjct: 121 FYIRLKSAYLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYE 180

Query: 181 KTLKSIDDLVALL 187
           KTLKS+D++V LL
Sbjct: 181 KTLKSLDEIVTLL 187

[Close]
BLAST of Lsi05G021130 vs. TrEMBL
Match: A0A0F7GX25_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 4.3e-54
Identity = 113/187 (60.43%), Postives = 145/187 (77.54%), Query Frame = 1 

Query: 8   NTLSSSWISTPHKCRHRRRHHFPIVTASL-----SAHRRDIATAL--AVVVGLQAAAAPL 67
           NT +   I  P++      H   ++ +S+     S  RR +A+ +  A  +GL  + +P+
Sbjct: 7   NTSTLLHIQNPNRPNPHPNHSISLIRSSIPTEETSITRRKLASTILAAASIGLGLSVSPI 66

Query: 68  ALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKS 127
           A+A+SWGT+SF+KER+FEPGLS E+A ARI+QTAEGLHS+REML+TMSWRYV+FYIRLKS
Sbjct: 67  AVAESWGTKSFLKERFFEPGLSPEDAAARIKQTAEGLHSMREMLDTMSWRYVMFYIRLKS 126

Query: 128 AYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 187
           AYLSQDLK AM  LP+ R+  +VKTANEL+DNMAE DYYVRTPKVYESY++YEKTLKSID
Sbjct: 127 AYLSQDLKNAMVTLPEGRRPAYVKTANELIDNMAEFDYYVRTPKVYESYVFYEKTLKSID 186

[Close]
BLAST of Lsi05G021130 vs. TrEMBL
Match: M5Y597_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 7.4e-54
Identity = 109/145 (75.17%), Postives = 127/145 (87.59%), Query Frame = 1 

Query: 43  IATALAVVVGLQAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIRE 102
           + T+LA+ V     A PL LA++WGTRSFI+ER+FEPGLS E+AVARI+QTAEGLHSIR+
Sbjct: 56  LGTSLALGVHQHGIATPLGLAENWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRD 115

Query: 103 MLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRT 162
           MLE M+WRYVIFYIRLKSAYLSQDLK A +++P  R+ ++VKTANELV+NM E DYYVRT
Sbjct: 116 MLEAMAWRYVIFYIRLKSAYLSQDLKNAATLVPDVRRQEYVKTANELVNNMTEFDYYVRT 175

Query: 163 PKVYESYLYYEKTLKSIDDLVALLA 188
           PKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 176 PKVYESYLYYEKTLKSIDDLVALLA 200

[Close]
BLAST of Lsi05G021130 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 194.5 bits (493), Expect = 5.8e-50
Identity = 97/148 (65.54%), Postives = 119/148 (80.41%), Query Frame = 1 

Query: 40  RRDIATALAVVVGLQAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 99
           RR   T+L     +  A +     + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYY 159
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R++D+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]
BLAST of Lsi05G021130 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 30/121 (24.79%), Postives = 60/121 (49.59%), Query Frame = 1 

Query: 67  GTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQD 126
           GTR+FIK+  +   +  +  + R+++ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 127 LKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
               +S      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 187 A 188
           A
Sbjct: 220 A 220

[Close]
BLAST of Lsi05G021130 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 300.4 bits (768), Expect = 2.1e-78
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 1 

Query: 1   MPAFANAN--TLSSSWISTPHKCRHRRRHHFPIVTASLSAHRRDIATALAVVVGLQAAAA 60
           MP  ANAN  TL SS ISTPHK RHR   HFP++TASL  HRR IAT LA+VVGLQAA  
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRP--HFPVITASLPIHRRHIATTLALVVGLQAATP 60

Query: 61  PLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRL 120
            +ALAQSWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRL
Sbjct: 61  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 120

Query: 121 KSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 180
           KSAYLSQDLKTAM+ LPQAR++DFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS
Sbjct: 121 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 180

Query: 181 IDDLVALLA 188
           IDDLVALLA
Sbjct: 181 IDDLVALLA 187

[Close]
BLAST of Lsi05G021130 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 298.1 bits (762), Expect = 1.1e-77
Identity = 162/184 (88.04%), Postives = 168/184 (91.30%), Query Frame = 1 

Query: 5   ANAN-TLSSSWISTPHKCRHRRRHHFPIVTASLSAHRRDIATALAVVVGLQAAAAPLALA 64
           ANAN TL SS ISTPHK  HRR  HFPI+TASL  HRR IAT LAVV+GLQ AA PLALA
Sbjct: 6   ANANSTLFSSPISTPHKSLHRR--HFPIITASLPIHRRHIATTLAVVIGLQ-AATPLALA 65

Query: 65  QSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYL 124
           QSWGT SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYL
Sbjct: 66  QSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 125

Query: 125 SQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 184
           SQDLKTAM+ LPQARQ+DFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 126 SQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 185

Query: 185 ALLA 188
           ALLA
Sbjct: 186 ALLA 186

[Close]
BLAST of Lsi05G021130 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 230.7 bits (587), Expect = 2.1e-57
Identity = 126/193 (65.28%), Postives = 147/193 (76.17%), Query Frame = 1 

Query: 1   MPAFANANTLSSSWISTPHKCRHRRRHHFPIVTASLSAH------RRDIATALAVVVGLQ 60
           M +F +  +LS + ++T    +H R    P   ASLS        RR ++T LA  + L 
Sbjct: 1   MSSFTSPTSLSCAQLTT---AQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALH 60

Query: 61  AAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIF 120
               PLALA++WGTRSF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIF
Sbjct: 61  GT--PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIF 120

Query: 121 YIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYYEK 180
           YIRLKSAYLSQDLK AM+ LP++R+  +   ANELVDNMAE DYYVRTPKVYESYLYYEK
Sbjct: 121 YIRLKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEK 180

Query: 181 TLKSIDDLVALLA 188
           TLKSIDDLVA+LA
Sbjct: 181 TLKSIDDLVAMLA 188

[Close]
BLAST of Lsi05G021130 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 125/195 (64.10%), Postives = 148/195 (75.90%), Query Frame = 1 

Query: 1   MPAFANANTLSSSWISTPHKCRHRRRHHF-PIVTASL------SAHRRDIATALAVVVGL 60
           M    N+ T     ++  H   H+R HHF P   A+L      S  R+ + T L   + L
Sbjct: 1   MSTITNSTTPFRHHVTAEH--HHKRHHHFFPRTQATLQDQENPSPRRKFLTTFLTTSLAL 60

Query: 61  QAA-AAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYV 120
               A PLALAQ+WGTRSF+KER+FEPGLS E+AVARIRQTAEGLH +R MLE+MSWRYV
Sbjct: 61  AGLQATPLALAQNWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHDLRGMLESMSWRYV 120

Query: 121 IFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTPKVYESYLYY 180
           IFYIRLK AYLSQD+KTAMS++P++R+  +V+TANELVDNMAE DYYVRTPKVYESY+YY
Sbjct: 121 IFYIRLKQAYLSQDMKTAMSMVPESRRKSYVQTANELVDNMAEFDYYVRTPKVYESYVYY 180

Query: 181 EKTLKSIDDLVALLA 188
           EKTLKSIDDLVALLA
Sbjct: 181 EKTLKSIDDLVALLA 193

[Close]
BLAST of Lsi05G021130 vs. NCBI nr
Match: gi|657994288|ref|XP_008389447.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica])

HSP 1 Score: 227.3 bits (578), Expect = 2.3e-56
Identity = 123/204 (60.29%), Postives = 148/204 (72.55%), Query Frame = 1 

Query: 1   MPAFANANT--LSSSWISTPHKCRHRRRHHFPIVTASLSAHRRD---------------I 60
           M +F N  T  L    ++ P   RH+     P++ ASL     D               +
Sbjct: 1   MGSFTNTTTSFLQFHIVTKPQNFRHKIS--LPVIRASLPGEEHDQENNATSRRKIVTAFL 60

Query: 61  ATALAVVVGLQAAAAPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREM 120
            T +A+       A PL LA++WG RSFI+ER+FEPGLS E+AVARIRQTAEGLHS+R+M
Sbjct: 61  VTTMALGAHQHGVATPLGLAENWGVRSFIRERFFEPGLSPEDAVARIRQTAEGLHSMRDM 120

Query: 121 LETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQSDFVKTANELVDNMAELDYYVRTP 180
           LE M+WRYVIFYIRLKSAYLSQDLK A++++P+AR+S++ KTANELVDNMAELDYYVRTP
Sbjct: 121 LEAMAWRYVIFYIRLKSAYLSQDLKNAVNLVPEARRSEYAKTANELVDNMAELDYYVRTP 180

Query: 181 KVYESYLYYEKTLKSIDDLVALLA 188
           KVYESYLYYEKTLKSIDDLVALLA
Sbjct: 181 KVYESYLYYEKTLKSIDDLVALLA 202

The following BLAST results are available for this feature:
BLAST of Lsi05G021130 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PNSL2_ARATH1.0e-4865.54Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t... [more]
BLAST of Lsi05G021130 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L3W3_CUCSA1.5e-7885.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1[more]
D7TN65_VITVI1.4e-5765.28Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=... [more]
A0A0F7GYP0_9ROSI1.0e-5563.21Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1[more]
A0A0F7GX25_9ROSI4.3e-5460.43Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1[more]
M5Y597_PRUPE7.4e-5475.17Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011707mg PE=4 SV=1[more]
BLAST of Lsi05G021130 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G14150.15.8e-5065.54 PsbQ-like 2[more]
AT3G01440.11.8e-0624.79 PsbQ-like 1[more]
BLAST of Lsi05G021130 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449432058|ref|XP_004133817.1|2.1e-7885.19PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu... [more]
gi|659075001|ref|XP_008437911.1|1.1e-7788.04PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo][more]
gi|225425642|ref|XP_002272064.1|2.1e-5765.28PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera][more]
gi|747049862|ref|XP_011070986.1|4.6e-5764.10PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum][more]
gi|657994288|ref|XP_008389447.1|2.3e-5660.29PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0019898extrinsic component of membrane
GO:0009654photosystem II oxygen evolving complex
GO:0009523photosystem II
Vocabulary: Biological Process
TermDefinition
GO:0015979photosynthesis
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR023222PsbQ-like_dom_sf
IPR008797PSII_PsbQ
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044710 single-organism metabolic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009344 nitrite reductase complex [NAD(P)H]
cellular_component GO:0009523 photosystem II
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G021130.1Lsi05G021130.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008797Oxygen-evolving enhancer protein 3PFAMPF05757PsbQcoord: 20..187
score: 4.3
IPR023222PsbQ-like domainGENE3DG3DSA:1.20.120.290coord: 55..187
score: 1.5
IPR023222PsbQ-like domainunknownSSF101112Oxygen-evolving enhancer protein 3,coord: 76..187
score: 2.75
NoneNo IPR availablePANTHERPTHR33399FAMILY NOT NAMEDcoord: 31..187
score: 5.8
NoneNo IPR availablePANTHERPTHR33399:SF5PSBQ-LIKE PROTEIN 1, CHLOROPLASTICcoord: 31..187
score: 5.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi05G021130Csa3G119660Cucumber (Chinese Long) v2culsiB209
Lsi05G021130CSPI03G08010Wild cucumber (PI 183967)cpilsiB207
Lsi05G021130Cucsa.259150Cucumber (Gy14) v1cgylsiB415
Lsi05G021130Cla021166Watermelon (97103) v1lsiwmB365
Lsi05G021130MELO3C006032Melon (DHL92) v3.5.1lsimeB378
Lsi05G021130ClCG05G000900Watermelon (Charleston Gray)lsiwcgB335
Lsi05G021130MELO3C006032.2Melon (DHL92) v3.6.1lsimedB396
Lsi05G021130Cla97C05G081100Watermelon (97103) v2lsiwmbB333
Lsi05G021130Bhi01G000341Wax gourdlsiwgoB433
Lsi05G021130CsGy3G008150Cucumber (Gy14) v2cgyblsiB196
Lsi05G021130CsaV3_3G008130Cucumber (Chinese Long) v3cuclsiB228
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G021130Silver-seed gourdcarlsiB907
Lsi05G021130Cucumber (Chinese Long) v3cuclsiB318
Lsi05G021130Cucumber (Chinese Long) v3cuclsiB402
Lsi05G021130Watermelon (97103) v2lsiwmbB319
Lsi05G021130Watermelon (97103) v2lsiwmbB332
Lsi05G021130Wax gourdlsiwgoB419
Lsi05G021130Wax gourdlsiwgoB439
Lsi05G021130Bottle gourd (USVL1VR-Ls)lsilsiB014
Lsi05G021130Bottle gourd (USVL1VR-Ls)lsilsiB158
Lsi05G021130Cucumber (Gy14) v1cgylsiB139
Lsi05G021130Cucumber (Gy14) v1cgylsiB349
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB000
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB245
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB320
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB321
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB583
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB759
Lsi05G021130Cucurbita maxima (Rimu)cmalsiB838
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB233
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB308
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB310
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB557
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB758
Lsi05G021130Cucurbita moschata (Rifu)cmolsiB822
Lsi05G021130Cucurbita pepo (Zucchini)cpelsiB039
Lsi05G021130Cucurbita pepo (Zucchini)cpelsiB506
Lsi05G021130Cucurbita pepo (Zucchini)cpelsiB626
Lsi05G021130Cucurbita pepo (Zucchini)cpelsiB714
Lsi05G021130Wild cucumber (PI 183967)cpilsiB298
Lsi05G021130Wild cucumber (PI 183967)cpilsiB382
Lsi05G021130Cucumber (Chinese Long) v2culsiB298
Lsi05G021130Cucumber (Chinese Long) v2culsiB378
Lsi05G021130Melon (DHL92) v3.5.1lsimeB336
Lsi05G021130Melon (DHL92) v3.5.1lsimeB375
Lsi05G021130Melon (DHL92) v3.5.1lsimeB387
Lsi05G021130Watermelon (Charleston Gray)lsiwcgB325
Lsi05G021130Watermelon (Charleston Gray)lsiwcgB334
Lsi05G021130Watermelon (97103) v1lsiwmB364
Lsi05G021130Watermelon (97103) v1lsiwmB375
Lsi05G021130Cucumber (Gy14) v2cgyblsiB274
Lsi05G021130Cucumber (Gy14) v2cgyblsiB345
Lsi05G021130Melon (DHL92) v3.6.1lsimedB353
Lsi05G021130Melon (DHL92) v3.6.1lsimedB408