CSPI03G08010 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G08010
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosynthetic NDH subcomplex L 2
Location	Chr3 : 6868217 .. 6869203 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAGGTAAAGGCCACAAAGTGTGTGTATGTTCTCCCTAAGGAAATGAACGGTAAGAACCCAAAAGTACATCCAAAGCCATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGGTATGTACTTTTGTTACTCTTTGATTTTACTAGTTGAATACTTACTAATTAAATTTAGTGGAAAGTCTAATTATTGATTAATGTTTTTCTTATTGAAGATTAATTTGATTAATTTGGATGATGATGTGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAGATGTAAATAAAATAATATCAAATGTTCTTCATCCCCCAAAATTATTGAATGCATCCAAATTTGTAGATTTGTGTTATTGTTTTAAGATTTCTGTAGTCTTTTTTATTAGTTAATTGTATTAATTAATTCATGTGTAAAAAATTATTTTATTCCAG

mRNA sequence

ATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Coding sequence (CDS)

ATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Homology

[Close]

BLAST of CSPI03G08010 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.4e-50
Identity = 99/148 (66.89%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 40  RRHIATTLALVVGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHS 99
           RR   T+L     +  AT      + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++RRND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CSPI03G08010 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of CSPI03G08010 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CSPI03G08010 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of CSPI03G08010 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G08010 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60
           MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 188
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CSPI03G08010 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.2e-57
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTLALVVGLQAATPLVAL 67
           +P +L  ++++T    R  P  P   ASL     PI RR I +TL         TPL AL
Sbjct: 6   SPTSLSCAQLTTAQHGRS-PSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPL-AL 65

Query: 68  AQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 127
           A++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 66  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 125

Query: 128 LSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 126 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 185

[Close]

BLAST of CSPI03G08010 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 124/188 (65.96%), Postives = 147/188 (78.19%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASLPIH-----RRHIATTLALV----VGLQAATP 67
           N +TL   + STP K    P  P+I +SLP+      RR I +TL       +GL A TP
Sbjct: 6   NTSTLLRLQTSTPRK----PSLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLNA-TP 65

Query: 68  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 127
           L ALA++WG+ SF+ ERYFEPGLS E+AVARI+QTAEGLHS+REML+T SWRYV+FYIRL
Sbjct: 66  L-ALAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMFYIRL 125

Query: 128 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 187
           KSAYL+QDLK AM+TLPQ RR  +VKTANEL+DNMAE DYYVRTPKVYESYLYYEKTLKS
Sbjct: 126 KSAYLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYEKTLKS 185

[Close]

BLAST of CSPI03G08010 vs. TrEMBL
Match: A0A0F7GX25_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.7e-55
Identity = 121/196 (61.73%), Postives = 150/196 (76.53%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPV--ITASLP-----IHRRHIATTL--ALVV 60
           M T+ N N +TL    I  P++    P+  +  I +S+P     I RR +A+T+  A  +
Sbjct: 1   MTTITN-NTSTLL--HIQNPNRPNPHPNHSISLIRSSIPTEETSITRRKLASTILAAASI 60

Query: 61  GLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRY 120
           GL  +   +A+A+SWGT SF+KER+FEPGLS E+A ARIKQTAEGLHS+REML+T SWRY
Sbjct: 61  GLGLSVSPIAVAESWGTKSFLKERFFEPGLSPEDAAARIKQTAEGLHSMREMLDTMSWRY 120

Query: 121 VIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLY 180
           V+FYIRLKSAYLSQDLK AM TLP+ RR  +VKTANEL+DNMAE DYYVRTPKVYESY++
Sbjct: 121 VMFYIRLKSAYLSQDLKNAMVTLPEGRRPAYVKTANELIDNMAEFDYYVRTPKVYESYVF 180

Query: 181 YEKTLKSIDDLVALLA 188
           YEKTLKSID+LV +LA
Sbjct: 181 YEKTLKSIDELVTMLA 193

[Close]

BLAST of CSPI03G08010 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 121/202 (59.90%), Postives = 145/202 (71.78%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSR-HRPHFPVITASLP-----------IHRRHIATTLA 60
           M T  N+      S   + P     ++P  P+I AS P            +RR + TT+ 
Sbjct: 1   MSTFTNSTALIHVSQSFTAPQTHLCNKPSIPIIRASFPSQQNDDVMTTSTNRRKLVTTIL 60

Query: 61  LV----VGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREML 120
                 +GL   +  VA+A++WGT SF++ER+FEPGLS E+A ARIKQTAEGLHS+REML
Sbjct: 61  ATPLAALGLHGTS--VAVAENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREML 120

Query: 121 ETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPK 180
           +  SWRYV+FYIRLK AYLSQDLK AM+TLPQAR+ ++VKTANELVDNMAE DYYVRTPK
Sbjct: 121 DNMSWRYVMFYIRLKQAYLSQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTPK 180

Query: 181 VYESYLYYEKTLKSIDDLVALL 187
           VYESYLYYEKTLKSIDDLVALL
Sbjct: 181 VYESYLYYEKTLKSIDDLVALL 200

[Close]

BLAST of CSPI03G08010 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 198.0 bits (502), Expect = 5.3e-51
Identity = 99/148 (66.89%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 40  RRHIATTLALVVGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHS 99
           RR   T+L     +  AT      + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++RRND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CSPI03G08010 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CSPI03G08010 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G08010 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-07
Identity = 29/121 (23.97%), Postives = 59/121 (48.76%), Query Frame = 1


Query: 67  GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 126
           GT +FIK+  +   +  +  + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 127 LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 187 A 188
           A
Sbjct: 220 A 220

[Close]

BLAST of CSPI03G08010 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60
           MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 188
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CSPI03G08010 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.3e-88
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 1


Query: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60

Query: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 188
           DDLVALLA
Sbjct: 181 DDLVALLA 186

[Close]

BLAST of CSPI03G08010 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTLALVVGLQAATPLVAL 67
           +P +L  ++++T    R  P  P   ASL     PI RR I +TL         TPL AL
Sbjct: 6   SPTSLSCAQLTTAQHGRS-PSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPL-AL 65

Query: 68  AQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 127
           A++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 66  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 125

Query: 128 LSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 126 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 185

[Close]

BLAST of CSPI03G08010 vs. NCBI nr
Match: gi|720007404|ref|XP_010258294.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 123/189 (65.08%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 7   ANPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTL---ALVVGLQAATP 66
           A P  L+   +    K R    F  I AS      P+HRR + +T    +L +GLQA TP
Sbjct: 5   ARPTALYHRHMPQTFKGRQSRSFSTIRASSIGEENPVHRRKVVSTFLTASLALGLQA-TP 64

Query: 67  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 126
            +ALA++WGT SFIKER+FEPGLS+E+AVARI+QTAEGLHSIR MLET SWRYV+FYIRL
Sbjct: 65  -IALAENWGTRSFIKERFFEPGLSSEDAVARIRQTAEGLHSIRGMLETMSWRYVLFYIRL 124

Query: 127 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 186
           K+AYLSQDLK  +T +P+ R + +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKS
Sbjct: 125 KTAYLSQDLKNVLTIMPENRLDSYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKS 184

Query: 187 IDDLVALLA 188
           +DDLVA+LA
Sbjct: 185 MDDLVAMLA 191

[Close]

BLAST of CSPI03G08010 vs. NCBI nr
Match: gi|658009340|ref|XP_008339879.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 124/191 (64.92%), Postives = 144/191 (75.39%), Query Frame = 1


Query: 12  LFSSRISTPHKSRHRPHFPVITASLP---------IHRRHIATT-LALVVGLQA-----A 71
           L S  ++ P   RH+   PVI AS P           RR I TT LA  +   A     A
Sbjct: 12  LQSHIVAKPQNFRHKISLPVIRASFPGENDQENNAASRRKIVTTFLATTLAXGAHQHGVA 71

Query: 72  TPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYI 131
           TPL  LA++WG  SFI+ER+FEPGLS E+AVARI+QTAEGLHS+R++LE  +WRYVIFYI
Sbjct: 72  TPL-GLAENWGVRSFIRERFFEPGLSPEDAVARIRQTAEGLHSMRDILEAMAWRYVIFYI 131

Query: 132 RLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTL 188
           RLKSAYLSQDLK A+T +P+ RRN++ KTANELVDNMAELDYYVRTPKVYESYLYYEKTL
Sbjct: 132 RLKSAYLSQDLKNAVTLVPEGRRNEYAKTANELVDNMAELDYYVRTPKVYESYLYYEKTL 191

The following BLAST results are available for this feature:

BLAST of CSPI03G08010 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	9.4e-50	66.89	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	4.3e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	7.3e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.2e-09	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ1_ARATH	2.1e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]

BLAST of CSPI03G08010 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	1.7e-98	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
D7TN65_VITVI	3.2e-57	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A0F7GYP0_9ROSI	1.2e-56	65.96	Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1	[more]
A0A0F7GX25_9ROSI	6.7e-55	61.73	Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1	[more]
A0A061EB55_THECC	1.1e-54	59.90	PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1	[more]

BLAST of CSPI03G08010 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	5.3e-51	66.89	PsbQ-like 2	[more]
AT4G05180.1	4.1e-11	27.83	photosystem II subunit Q-2	[more]
AT4G21280.2	1.2e-10	26.09	photosystem II subunit QA	[more]
AT3G01440.1	8.0e-07	23.97	PsbQ-like 1	[more]

BLAST of CSPI03G08010 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432058\|ref\|XP_004133817.1\|	2.4e-98	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|659075001\|ref\|XP_008437911.1\|	2.3e-88	93.62	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|225425642\|ref\|XP_002272064.1\|	4.6e-57	67.57	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]
gi\|720007404\|ref\|XP_010258294.1\|	4.6e-57	65.08	PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera]	[more]
gi\|658009340\|ref\|XP_008339879.1\|	1.9e-55	64.92	PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G08010.1	CSPI03G08010.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 57..187 score: 3.0
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 49..187 score: 7.4
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 76..187 score: 2.88
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 61..187 score: 9.0
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 61..187 score: 9.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G08010	Cla021166	Watermelon (97103) v1	cpiwmB231
CSPI03G08010	Csa3G119660	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G08010	MELO3C006032	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G08010	ClCG05G000900	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G08010	Lsi05G021130	Bottle gourd (USVL1VR-Ls)	cpilsiB207
CSPI03G08010	MELO3C006032.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G08010	CsaV3_3G008130	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G08010	Cla97C05G081100	Watermelon (97103) v2	cpiwmbB209
CSPI03G08010	Bhi01G000341	Wax gourd	cpiwgoB284
CSPI03G08010	Cucsa.259150	Cucumber (Gy14) v1	cgycpiB383
CSPI03G08010	CsGy3G008150	Cucumber (Gy14) v2	cgybcpiB110

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G08010	Cucumber (Chinese Long) v3	cpicucB161
CSPI03G08010	Cucumber (Chinese Long) v3	cpicucB163
CSPI03G08010	Watermelon (97103) v2	cpiwmbB176
CSPI03G08010	Watermelon (97103) v2	cpiwmbB231
CSPI03G08010	Wax gourd	cpiwgoB261
CSPI03G08010	Wax gourd	cpiwgoB296
CSPI03G08010	Wild cucumber (PI 183967)	cpicpiB108
CSPI03G08010	Wild cucumber (PI 183967)	cpicpiB110
CSPI03G08010	Cucumber (Gy14) v1	cgycpiB129
CSPI03G08010	Cucumber (Gy14) v1	cgycpiB320
CSPI03G08010	Cucurbita maxima (Rimu)	cmacpiB005
CSPI03G08010	Cucurbita maxima (Rimu)	cmacpiB255
CSPI03G08010	Cucurbita maxima (Rimu)	cmacpiB289
CSPI03G08010	Cucurbita maxima (Rimu)	cmacpiB830
CSPI03G08010	Cucurbita maxima (Rimu)	cmacpiB842
CSPI03G08010	Cucurbita moschata (Rifu)	cmocpiB243
CSPI03G08010	Cucurbita moschata (Rifu)	cmocpiB278
CSPI03G08010	Cucurbita moschata (Rifu)	cmocpiB599
CSPI03G08010	Cucurbita moschata (Rifu)	cmocpiB814
CSPI03G08010	Cucumber (Chinese Long) v2	cpicuB134
CSPI03G08010	Cucumber (Chinese Long) v2	cpicuB136
CSPI03G08010	Melon (DHL92) v3.5.1	cpimeB166
CSPI03G08010	Melon (DHL92) v3.5.1	cpimeB249
CSPI03G08010	Melon (DHL92) v3.5.1	cpimeB252
CSPI03G08010	Watermelon (Charleston Gray)	cpiwcgB206
CSPI03G08010	Watermelon (Charleston Gray)	cpiwcgB246
CSPI03G08010	Watermelon (97103) v1	cpiwmB257
CSPI03G08010	Cucurbita pepo (Zucchini)	cpecpiB611
CSPI03G08010	Cucurbita pepo (Zucchini)	cpecpiB722
CSPI03G08010	Cucurbita pepo (Zucchini)	cpecpiB864
CSPI03G08010	Bottle gourd (USVL1VR-Ls)	cpilsiB150
CSPI03G08010	Melon (DHL92) v3.6.1	cpimedB157
CSPI03G08010	Melon (DHL92) v3.6.1	cpimedB248
CSPI03G08010	Cucumber (Gy14) v2	cgybcpiB166
CSPI03G08010	Cucumber (Gy14) v2	cgybcpiB208
CSPI03G08010	Silver-seed gourd	carcpiB1031