CSPI03G08010.1 (mRNA) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G08010.1
Type	mRNA
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Photosynthetic NDH subcomplex L 2
Location	Chr3 : 6868217 .. 6869203 (+)
Sequence length	564

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGACAAAGTGATAAAATGTAAGGTTGTGAATGAATATAATGAAATGGATAAGAAGGTAAGGTAAAGGCCACAAAGTGTGTGTATGTTCTCCCTAAGGAAATGAACGGTAAGAACCCAAAAGTACATCCAAAGCCATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGGTATGTACTTTTGTTACTCTTTGATTTTACTAGTTGAATACTTACTAATTAAATTTAGTGGAAAGTCTAATTATTGATTAATGTTTTTCTTATTGAAGATTAATTTGATTAATTTGGATGATGATGTGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAGATGTAAATAAAATAATATCAAATGTTCTTCATCCCCCAAAATTATTGAATGCATCCAAATTTGTAGATTTGTGTTATTGTTTTAAGATTTCTGTAGTCTTTTTTATTAGTTAATTGTATTAATTAATTCATGTGTAAAAAATTATTTTATTCCAG

mRNA sequence

ATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Coding sequence (CDS)

ATGCCTACCCTTGCCAACGCCAACCCCAACACTCTCTTCTCCTCTCGCATCTCCACTCCCCACAAATCCCGCCACCGCCCCCACTTCCCCGTCATCACTGCCTCCCTTCCCATCCACCGTCGCCATATCGCGACAACCCTTGCACTGGTGGTTGGGTTGCAAGCTGCAACACCCCTCGTGGCGCTAGCCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Homology

[Close]

BLAST of CSPI03G08010.1 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 9.4e-50
Identity = 99/148 (66.89%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 40  RRHIATTLALVVGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHS 99
           RR   T+L     +  AT      + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++RRND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CSPI03G08010.1 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 4.3e-10
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of CSPI03G08010.1 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 65.5 bits (158), Expect = 7.3e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CSPI03G08010.1 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of CSPI03G08010.1 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-09
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G08010.1 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 1.7e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60
           MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 188
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CSPI03G08010.1 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.2e-57
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTLALVVGLQAATPLVAL 67
           +P +L  ++++T    R  P  P   ASL     PI RR I +TL         TPL AL
Sbjct: 6   SPTSLSCAQLTTAQHGRS-PSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPL-AL 65

Query: 68  AQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 127
           A++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 66  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 125

Query: 128 LSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 126 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 185

[Close]

BLAST of CSPI03G08010.1 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 124/188 (65.96%), Postives = 147/188 (78.19%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASLPIH-----RRHIATTLALV----VGLQAATP 67
           N +TL   + STP K    P  P+I +SLP+      RR I +TL       +GL A TP
Sbjct: 6   NTSTLLRLQTSTPRK----PSLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLNA-TP 65

Query: 68  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 127
           L ALA++WG+ SF+ ERYFEPGLS E+AVARI+QTAEGLHS+REML+T SWRYV+FYIRL
Sbjct: 66  L-ALAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMFYIRL 125

Query: 128 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 187
           KSAYL+QDLK AM+TLPQ RR  +VKTANEL+DNMAE DYYVRTPKVYESYLYYEKTLKS
Sbjct: 126 KSAYLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYEKTLKS 185

[Close]

BLAST of CSPI03G08010.1 vs. TrEMBL
Match: A0A0F7GX25_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 6.7e-55
Identity = 121/196 (61.73%), Postives = 150/196 (76.53%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPV--ITASLP-----IHRRHIATTL--ALVV 60
           M T+ N N +TL    I  P++    P+  +  I +S+P     I RR +A+T+  A  +
Sbjct: 1   MTTITN-NTSTLL--HIQNPNRPNPHPNHSISLIRSSIPTEETSITRRKLASTILAAASI 60

Query: 61  GLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRY 120
           GL  +   +A+A+SWGT SF+KER+FEPGLS E+A ARIKQTAEGLHS+REML+T SWRY
Sbjct: 61  GLGLSVSPIAVAESWGTKSFLKERFFEPGLSPEDAAARIKQTAEGLHSMREMLDTMSWRY 120

Query: 121 VIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLY 180
           V+FYIRLKSAYLSQDLK AM TLP+ RR  +VKTANEL+DNMAE DYYVRTPKVYESY++
Sbjct: 121 VMFYIRLKSAYLSQDLKNAMVTLPEGRRPAYVKTANELIDNMAEFDYYVRTPKVYESYVF 180

Query: 181 YEKTLKSIDDLVALLA 188
           YEKTLKSID+LV +LA
Sbjct: 181 YEKTLKSIDELVTMLA 193

[Close]

BLAST of CSPI03G08010.1 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.1e-54
Identity = 121/202 (59.90%), Postives = 145/202 (71.78%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSR-HRPHFPVITASLP-----------IHRRHIATTLA 60
           M T  N+      S   + P     ++P  P+I AS P            +RR + TT+ 
Sbjct: 1   MSTFTNSTALIHVSQSFTAPQTHLCNKPSIPIIRASFPSQQNDDVMTTSTNRRKLVTTIL 60

Query: 61  LV----VGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREML 120
                 +GL   +  VA+A++WGT SF++ER+FEPGLS E+A ARIKQTAEGLHS+REML
Sbjct: 61  ATPLAALGLHGTS--VAVAENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREML 120

Query: 121 ETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPK 180
           +  SWRYV+FYIRLK AYLSQDLK AM+TLPQAR+ ++VKTANELVDNMAE DYYVRTPK
Sbjct: 121 DNMSWRYVMFYIRLKQAYLSQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTPK 180

Query: 181 VYESYLYYEKTLKSIDDLVALL 187
           VYESYLYYEKTLKSIDDLVALL
Sbjct: 181 VYESYLYYEKTLKSIDDLVALL 200

[Close]

BLAST of CSPI03G08010.1 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 198.0 bits (502), Expect = 5.3e-51
Identity = 99/148 (66.89%), Postives = 115/148 (77.70%), Query Frame = 1


Query: 40  RRHIATTLALVVGLQAATPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHS 99
           RR   T+L     +  AT      + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 100 IREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYY 159
           +REML+  SWRYVIFYIRLK AYLSQDL  AM  LP++RRND+V+ ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 160 VRTPKVYESYLYYEKTLKSIDDLVALLA 188
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of CSPI03G08010.1 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 65.5 bits (158), Expect = 4.1e-11
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of CSPI03G08010.1 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 72  IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 131
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 132 TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 187
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of CSPI03G08010.1 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 51.2 bits (121), Expect = 8.0e-07
Identity = 29/121 (23.97%), Postives = 59/121 (48.76%), Query Frame = 1


Query: 67  GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 126
           GT +FIK+  +   +  +  + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 127 LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 186
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 187 A 188
           A
Sbjct: 220 A 220

[Close]

BLAST of CSPI03G08010.1 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 2.4e-98
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1


Query: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60
           MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV
Sbjct: 1   MPTLANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLV 60

Query: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120
           ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS
Sbjct: 61  ALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKS 120

Query: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180
           AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID
Sbjct: 121 AYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSID 180

Query: 181 DLVALLA 188
           DLVALLA
Sbjct: 181 DLVALLA 187

[Close]

BLAST of CSPI03G08010.1 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 333.6 bits (854), Expect = 2.3e-88
Identity = 176/188 (93.62%), Postives = 182/188 (96.81%), Query Frame = 1


Query: 1   MPTL-ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPL 60
           MPTL ANAN +TLFSS ISTPHKS HR HFP+ITASLPIHRRHIATTLA+V+GLQAATPL
Sbjct: 1   MPTLLANAN-STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQAATPL 60

Query: 61  VALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120
            ALAQSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK
Sbjct: 61  -ALAQSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLK 120

Query: 121 SAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180
           SAYLSQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI
Sbjct: 121 SAYLSQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSI 180

Query: 181 DDLVALLA 188
           DDLVALLA
Sbjct: 181 DDLVALLA 186

[Close]

BLAST of CSPI03G08010.1 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 125/185 (67.57%), Postives = 142/185 (76.76%), Query Frame = 1


Query: 8   NPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTLALVVGLQAATPLVAL 67
           +P +L  ++++T    R  P  P   ASL     PI RR I +TL         TPL AL
Sbjct: 6   SPTSLSCAQLTTAQHGRS-PSLPATRASLSGEETPILRRRIVSTLLATSLALHGTPL-AL 65

Query: 68  AQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAY 127
           A++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAY
Sbjct: 66  AENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAY 125

Query: 128 LSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDL 187
           LSQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDL
Sbjct: 126 LSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDL 185

[Close]

BLAST of CSPI03G08010.1 vs. NCBI nr
Match: gi|720007404|ref|XP_010258294.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 229.6 bits (584), Expect = 4.6e-57
Identity = 123/189 (65.08%), Postives = 146/189 (77.25%), Query Frame = 1


Query: 7   ANPNTLFSSRISTPHKSRHRPHFPVITASL-----PIHRRHIATTL---ALVVGLQAATP 66
           A P  L+   +    K R    F  I AS      P+HRR + +T    +L +GLQA TP
Sbjct: 5   ARPTALYHRHMPQTFKGRQSRSFSTIRASSIGEENPVHRRKVVSTFLTASLALGLQA-TP 64

Query: 67  LVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRL 126
            +ALA++WGT SFIKER+FEPGLS+E+AVARI+QTAEGLHSIR MLET SWRYV+FYIRL
Sbjct: 65  -IALAENWGTRSFIKERFFEPGLSSEDAVARIRQTAEGLHSIRGMLETMSWRYVLFYIRL 124

Query: 127 KSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKS 186
           K+AYLSQDLK  +T +P+ R + +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKS
Sbjct: 125 KTAYLSQDLKNVLTIMPENRLDSYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKS 184

Query: 187 IDDLVALLA 188
           +DDLVA+LA
Sbjct: 185 MDDLVAMLA 191

[Close]

BLAST of CSPI03G08010.1 vs. NCBI nr
Match: gi|658009340|ref|XP_008339879.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica])

HSP 1 Score: 224.2 bits (570), Expect = 1.9e-55
Identity = 124/191 (64.92%), Postives = 144/191 (75.39%), Query Frame = 1


Query: 12  LFSSRISTPHKSRHRPHFPVITASLP---------IHRRHIATT-LALVVGLQA-----A 71
           L S  ++ P   RH+   PVI AS P           RR I TT LA  +   A     A
Sbjct: 12  LQSHIVAKPQNFRHKISLPVIRASFPGENDQENNAASRRKIVTTFLATTLAXGAHQHGVA 71

Query: 72  TPLVALAQSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYI 131
           TPL  LA++WG  SFI+ER+FEPGLS E+AVARI+QTAEGLHS+R++LE  +WRYVIFYI
Sbjct: 72  TPL-GLAENWGVRSFIRERFFEPGLSPEDAVARIRQTAEGLHSMRDILEAMAWRYVIFYI 131

Query: 132 RLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTL 188
           RLKSAYLSQDLK A+T +P+ RRN++ KTANELVDNMAELDYYVRTPKVYESYLYYEKTL
Sbjct: 132 RLKSAYLSQDLKNAVTLVPEGRRNEYAKTANELVDNMAELDYYVRTPKVYESYLYYEKTL 191

The following BLAST results are available for this feature:

BLAST of CSPI03G08010.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	9.4e-50	66.89	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	4.3e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	7.3e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	1.2e-09	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ1_ARATH	2.1e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]

BLAST of CSPI03G08010.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	1.7e-98	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
D7TN65_VITVI	3.2e-57	67.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A0F7GYP0_9ROSI	1.2e-56	65.96	Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1	[more]
A0A0F7GX25_9ROSI	6.7e-55	61.73	Photosynthetic NDH subcomplex L 2 OS=Francoa sonchifolia GN=2 PE=2 SV=1	[more]
A0A061EB55_THECC	1.1e-54	59.90	PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1	[more]

BLAST of CSPI03G08010.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	5.3e-51	66.89	PsbQ-like 2	[more]
AT4G05180.1	4.1e-11	27.83	photosystem II subunit Q-2	[more]
AT4G21280.2	1.2e-10	26.09	photosystem II subunit QA	[more]
AT3G01440.1	8.0e-07	23.97	PsbQ-like 1	[more]

BLAST of CSPI03G08010.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432058\|ref\|XP_004133817.1\|	2.4e-98	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|659075001\|ref\|XP_008437911.1\|	2.3e-88	93.62	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|225425642\|ref\|XP_002272064.1\|	4.6e-57	67.57	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]
gi\|720007404\|ref\|XP_010258294.1\|	4.6e-57	65.08	PREDICTED: psbQ-like protein 1, chloroplastic [Nelumbo nucifera]	[more]
gi\|658009340\|ref\|XP_008339879.1\|	1.9e-55	64.92	PREDICTED: psbQ-like protein 1, chloroplastic [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0005509	calcium ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CSPI03G08010	CSPI03G08010	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CSPI03G08010.1	CSPI03G08010.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G08010.1.utr5p1	CSPI03G08010.1.utr5p1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G08010.1.cds1	CSPI03G08010.1.cds1	CDS
CSPI03G08010.1.cds2	CSPI03G08010.1.cds2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CSPI03G08010.1.utr3p1	CSPI03G08010.1.utr3p1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 57..187 score: 3.0
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 49..187 score: 7.4
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 76..187 score: 2.88
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 61..187 score: 9.0
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 61..187 score: 9.0