Cla021166 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021166
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Oxygen evolving enhancer protein 3 (AHRD V1 ***- B6SUJ9_MAIZE); contains Interpro domain(s) IPR008797 Photosystem II oxygen evolving complex protein PsbQ
Location	Chr5 : 893774 .. 895017 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGGTATGCACTTTTGTTACTATTTCATTTTACTACTGTTTCATAATCTACAGTTTTATACCATATAGAAAATGGTGAATTTATATTACACTTTCAGTTATTAACAAGTCAAGTTTTTGATATTCTAAACATATGTAACCGATTAAATTTATTTGTGTTTTGATTATTAATCAGGGGAAATTGTTTGAATCTAATCTCAAATTTTGATTTTTTTTTTCTTTGGTTAAAATATCATTTTGGTCTAAATAATTTAAGGATGGTTCAATTTTTTAATCCAAATAATTTCAAGAAAATTTAAATATAGTTTCTTTATTTATAAGCATCTTTACTTCAAAATTTGAAAACATATTCACATGTTATATTTTCTTACATGATAATTATTATTATTATTTAATTAATTTCTATAAAAATTAAGGGCAGTTGTTTGGCAGTTTTTCCTAAATAAAGAATGTGGGTGGAGATCATATGGGGTTCACGAAGTTAGAAAATGGTCAATTAAGATGGCACAAATTTCTGTATTAATATGGGAATAACATAATAGACAAAATAGATAAACAACATTCAAATGTCAATAAATGCTTCTAACTTGAGGTGTAGGTAGGCAAAGTATATATTCTCATAAATTTAGTCCATAGTCTAATGGATTAGTTTGATATTTCTGATTGTCATTCAACTTTGAATTGATGTTTCAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAA

mRNA sequence

ATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAA

Coding sequence (CDS)

ATGCCTGCCTTTGCCAATGTCACCACCCTCTTCTCCTCTTGCATTTCCGCTCCCCACAAATGCCGCCACCACCACTTTCCTGTCATCACCGCCTCCCTTTGCGTCCACCGCCGCCATATCGCAACCGCCCTCGCGGCACTGGTGGGGCTGCAGGCCACAGCACCGCCCCTTGCGCTAGCCCAAAGTTGGGGCACCCGCTCGTTCATTAAGGAGCGGTACTTCGAGCCCGGGCTGTCGGCGGAGGAGGCGGTGGCGAGGATAAGGCAAACGGCTGAAGGGCTTCACAGCATTCGTGAGATGTTGGAAACGATGTCATGGAGATATGTGATCTTCTACATTCGTTTGAAGTCGGCTTATCTGTCACAAGACTTGAAAACTGCCATGTCTGTTTTGCCACAAGCTCGCCAAAATGACTTTGTTAACACTGCTAATGAACTGGTCGATAACATGGCTGAGTTGGATTATTACGTTCGTACACCAAAGGTGTATGAGTCGTATTTGTATTACGAAAAGACACTGAAATCCATTGATGATCTGGTGGCTTTACTAGCATAA

Protein sequence

MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA

Homology

[Close]

BLAST of Cla021166 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 1.4e-50
Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = 1


Query: 37  RRHIATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHS 96
           RR   T+L     +          + WGTRSFIKE+YF PGLS E+A ARI+QTAEGL  
Sbjct: 43  RRRTLTSLITFTVIGGATSSALAQEKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRD 102

Query: 97  IREMLETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYY 156
           +REML+ MSWRYVIFYIRLK AYLSQDL  AM++LP++R+ND+V  ANELV+NM+ELD+Y
Sbjct: 103 MREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNILPESRRNDYVQAANELVENMSELDFY 162

Query: 157 VRTPKVYESYLYYEKTLKSIDDLVALLA 185
           VRTPKVYESYLYYEKTLKSID++V  LA
Sbjct: 163 VRTPKVYESYLYYEKTLKSIDNVVEFLA 190

[Close]

BLAST of Cla021166 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 70.9 bits (172), Expect = 1.7e-11
Identity = 45/178 (25.28%), Postives = 84/178 (47.19%), Query Frame = 1


Query: 15  ISAPHKCRHHHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGT------RSF 74
           +S P   R     ++ A L      +    A  + ++   PPL      GT      R F
Sbjct: 53  VSVPESSRRSVIGLVAAGLA-GGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDF 112

Query: 75  ---IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLK 134
              +K+R++   LS  EA AR + +A+ + +++  ++  +W YV   +RL+++YL  DL 
Sbjct: 113 SLALKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLN 172

Query: 135 TAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           T +S  P+  +    +   +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 173 TVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cla021166 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10
Identity = 34/122 (27.87%), Postives = 66/122 (54.10%), Query Frame = 1


Query: 65  TRSF---IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 124
           TR F   +KER++   L   EAVAR++ +A+ + +++ +++  +W YV   +RL+++YL 
Sbjct: 91  TRDFDLPLKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLR 150

Query: 125 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184
            DLKT ++  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A
Sbjct: 151 YDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLA 210

[Close]

BLAST of Cla021166 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 64.3 bits (155), Expect = 1.6e-09
Identity = 30/115 (26.09%), Postives = 64/115 (55.65%), Query Frame = 1


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +K+R++   L   EA AR +++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           S  P+  +    +   +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cla021166 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.5e-09
Identity = 30/115 (26.09%), Postives = 62/115 (53.91%), Query Frame = 1


Query: 69  IKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKTAM 128
           +KER++   L   EA AR++ +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 129 SVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
           +  P+  +        +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Cla021166 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 308.1 bits (788), Expect = 7.0e-81
Identity = 159/183 (86.89%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 3   AFANVTTLFSSCISAPHKCRHH-HFPVITASLCVHRRHIATALAALVGLQATAPPLALAQ 62
           A AN  TLFSS IS PHK RH  HFPVITASL +HRRHIAT LA +VGLQA  P +ALAQ
Sbjct: 5   ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLVALAQ 64

Query: 63  SWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 122
           SWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLS
Sbjct: 65  SWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLS 124

Query: 123 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 182
           QDLKTAM+ LPQAR+NDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA
Sbjct: 125 QDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184

Query: 183 LLA 185
           LLA
Sbjct: 185 LLA 187

[Close]

BLAST of Cla021166 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 8.9e-60
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 1


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLC------VHRRHIATALAALVGLQATA 60
           M +F + T+L  + ++     R    P   ASL       + RR ++T LA  + L  T 
Sbjct: 1   MSSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGT- 60

Query: 61  PPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIR 120
            PLALA++WGTRSF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIFYIR
Sbjct: 61  -PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIR 120

Query: 121 LKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLK 180
           LKSAYLSQDLK AM+ LP++R+  + N ANELVDNMAE DYYVRTPKVYESYLYYEKTLK
Sbjct: 121 LKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLK 180

Query: 181 SIDDLVALLA 185
           SIDDLVA+LA
Sbjct: 181 SIDDLVAMLA 188

[Close]

BLAST of Cla021166 vs. TrEMBL
Match: A0A0F7GYP0_9ROSI (Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 3.2e-57
Identity = 124/192 (64.58%), Postives = 144/192 (75.00%), Query Frame = 1


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLCVH-----RRHIATAL----AALVGLQ 60
           M  F N +TL     S P K      P+I +SL V      RR I + L       +GL 
Sbjct: 1   MSIFTNTSTLLRLQTSTPRK---PSLPIIRSSLPVEENAIIRRRILSTLFTTSMGTIGLN 60

Query: 61  ATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIF 120
           AT  PLALA++WG+RSF+ ERYFEPGLS E+AVARIRQTAEGLHS+REML+TMSWRYV+F
Sbjct: 61  AT--PLALAENWGSRSFLLERYFEPGLSPEDAVARIRQTAEGLHSMREMLDTMSWRYVMF 120

Query: 121 YIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEK 180
           YIRLKSAYL+QDLK AMS LPQ R+  +V TANEL+DNMAE DYYVRTPKVYESYLYYEK
Sbjct: 121 YIRLKSAYLNQDLKNAMSTLPQTRRPAYVKTANELIDNMAEFDYYVRTPKVYESYLYYEK 180

Query: 181 TLKSIDDLVALL 184
           TLKS+D++V LL
Sbjct: 181 TLKSLDEIVTLL 187

[Close]

BLAST of Cla021166 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 4.1e-57
Identity = 128/203 (63.05%), Postives = 148/203 (72.91%), Query Frame = 1


Query: 1   MPAFANVTTLF--SSCISAP--HKCRHHHFPVITASL-----------CVHRRHI----- 60
           M  F N T L   S   +AP  H C     P+I AS              +RR +     
Sbjct: 1   MSTFTNSTALIHVSQSFTAPQTHLCNKPSIPIIRASFPSQQNDDVMTTSTNRRKLVTTIL 60

Query: 61  ATALAALVGLQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREM 120
           AT LAAL GL  T+  +A+A++WGTRSF++ER+FEPGLS E+A ARI+QTAEGLHS+REM
Sbjct: 61  ATPLAAL-GLHGTS--VAVAENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREM 120

Query: 121 LETMSWRYVIFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTP 180
           L+ MSWRYV+FYIRLK AYLSQDLK AMS LPQAR+ ++V TANELVDNMAE DYYVRTP
Sbjct: 121 LDNMSWRYVMFYIRLKQAYLSQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTP 180

Query: 181 KVYESYLYYEKTLKSIDDLVALL 184
           KVYESYLYYEKTLKSIDDLVALL
Sbjct: 181 KVYESYLYYEKTLKSIDDLVALL 200

[Close]

BLAST of Cla021166 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.0e-56
Identity = 117/178 (65.73%), Postives = 138/178 (77.53%), Query Frame = 1


Query: 19  HKCRHHHFPVITASLCVHRRHI-------------ATALAALVGLQATAPPLALAQSWGT 78
           H C     P+I AS    + ++             AT+LAAL GL  T  P+A+A++WGT
Sbjct: 23  HHCSRLSLPIIRASFQPQQNNVIISNRRKLVTTFLATSLAAL-GLNGT--PVAVAENWGT 82

Query: 79  RSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLK 138
            SF++ER+FEPGLS E+A ARI+QTAEGLHS+R+ML+TMSWRYV+FYIRLK AYLSQDLK
Sbjct: 83  HSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYLSQDLK 142

Query: 139 TAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 184
            AMS LPQ R++ +V TANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLVALL
Sbjct: 143 NAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLVALL 197

[Close]

BLAST of Cla021166 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 308.1 bits (788), Expect = 1.0e-80
Identity = 159/183 (86.89%), Postives = 165/183 (90.16%), Query Frame = 1


Query: 3   AFANVTTLFSSCISAPHKCRHH-HFPVITASLCVHRRHIATALAALVGLQATAPPLALAQ 62
           A AN  TLFSS IS PHK RH  HFPVITASL +HRRHIAT LA +VGLQA  P +ALAQ
Sbjct: 5   ANANPNTLFSSRISTPHKSRHRPHFPVITASLPIHRRHIATTLALVVGLQAATPLVALAQ 64

Query: 63  SWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLS 122
           SWGT SFIKERYFEPGLSAEEAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLS
Sbjct: 65  SWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLS 124

Query: 123 QDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 182
           QDLKTAM+ LPQAR+NDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA
Sbjct: 125 QDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVA 184

Query: 183 LLA 185
           LLA
Sbjct: 185 LLA 187

[Close]

BLAST of Cla021166 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 301.2 bits (770), Expect = 1.2e-78
Identity = 155/178 (87.08%), Postives = 163/178 (91.57%), Query Frame = 1


Query: 8   TTLFSSCISAPHKCRH-HHFPVITASLCVHRRHIATALAALVGLQATAPPLALAQSWGTR 67
           +TLFSS IS PHK  H  HFP+ITASL +HRRHIAT LA ++GLQA A PLALAQSWGT 
Sbjct: 10  STLFSSPISTPHKSLHRRHFPIITASLPIHRRHIATTLAVVIGLQA-ATPLALAQSWGTH 69

Query: 68  SFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIRLKSAYLSQDLKT 127
           SFIKERYFEPGLSA+EAVARI+QTAEGLHSIREMLET SWRYVIFYIRLKSAYLSQDLKT
Sbjct: 70  SFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKT 129

Query: 128 AMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 185
           AM+ LPQARQNDFV TANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA
Sbjct: 130 AMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA 186

[Close]

BLAST of Cla021166 vs. NCBI nr
Match: gi|747049862|ref|XP_011070986.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum])

HSP 1 Score: 243.4 bits (620), Expect = 3.0e-61
Identity = 131/195 (67.18%), Postives = 150/195 (76.92%), Query Frame = 1


Query: 1   MPAFANVTTLFSSCISAPH--KCRHHHFPVITASL------CVHRRHIATALA---ALVG 60
           M    N TT F   ++A H  K  HH FP   A+L         R+ + T L    AL G
Sbjct: 1   MSTITNSTTPFRHHVTAEHHHKRHHHFFPRTQATLQDQENPSPRRKFLTTFLTTSLALAG 60

Query: 61  LQATAPPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYV 120
           LQAT  PLALAQ+WGTRSF+KER+FEPGLS E+AVARIRQTAEGLH +R MLE+MSWRYV
Sbjct: 61  LQAT--PLALAQNWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHDLRGMLESMSWRYV 120

Query: 121 IFYIRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYY 180
           IFYIRLK AYLSQD+KTAMS++P++R+  +V TANELVDNMAE DYYVRTPKVYESY+YY
Sbjct: 121 IFYIRLKQAYLSQDMKTAMSMVPESRRKSYVQTANELVDNMAEFDYYVRTPKVYESYVYY 180

Query: 181 EKTLKSIDDLVALLA 185
           EKTLKSIDDLVALLA
Sbjct: 181 EKTLKSIDDLVALLA 193

[Close]

BLAST of Cla021166 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 238.0 bits (606), Expect = 1.3e-59
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 1


Query: 1   MPAFANVTTLFSSCISAPHKCRHHHFPVITASLC------VHRRHIATALAALVGLQATA 60
           M +F + T+L  + ++     R    P   ASL       + RR ++T LA  + L  T 
Sbjct: 1   MSSFTSPTSLSCAQLTTAQHGRSPSLPATRASLSGEETPILRRRIVSTLLATSLALHGT- 60

Query: 61  PPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFYIR 120
            PLALA++WGTRSF+KER+FEPGLS E+AVARIRQTAEGLHSIR MLETMSWRYVIFYIR
Sbjct: 61  -PLALAENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIR 120

Query: 121 LKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKTLK 180
           LKSAYLSQDLK AM+ LP++R+  + N ANELVDNMAE DYYVRTPKVYESYLYYEKTLK
Sbjct: 121 LKSAYLSQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLK 180

Query: 181 SIDDLVALLA 185
           SIDDLVA+LA
Sbjct: 181 SIDDLVAMLA 188

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BLAST of Cla021166 vs. NCBI nr
Match: gi|1009154202|ref|XP_015895040.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 237.7 bits (605), Expect = 1.7e-59
Identity = 127/192 (66.15%), Postives = 145/192 (75.52%), Query Frame = 1


Query: 6   NVTTLFSSCISAPHKCRHHHFPVITASL-------CVHRRHIATALA---ALVGLQATA- 65
           N  T  ++ +   H CR   FP I AS        C  R+ + T +A   AL GLQ    
Sbjct: 3   NFLTQITTLLCPQHCCRARAFPSIRASFQNEENTTCSRRKIVTTFVASSVALTGLQYQVI 62

Query: 66  --PPLALAQSWGTRSFIKERYFEPGLSAEEAVARIRQTAEGLHSIREMLETMSWRYVIFY 125
              P ALAQ+WGTRSFI+ER+FEPGLS E+AVARI+QTAEGLHSIR+MLE+MSWRYVIFY
Sbjct: 63  MKTPDALAQNWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLESMSWRYVIFY 122

Query: 126 IRLKSAYLSQDLKTAMSVLPQARQNDFVNTANELVDNMAELDYYVRTPKVYESYLYYEKT 185
           IRLKSAYLSQDLK AM+ LP+AR+ D+   ANELVDNMAE DYYVRTPKVYESY+YYEKT
Sbjct: 123 IRLKSAYLSQDLKNAMTTLPEARRQDYAKVANELVDNMAEFDYYVRTPKVYESYVYYEKT 182

The following BLAST results are available for this feature:

BLAST of Cla021166 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	1.4e-50	65.54	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_ARATH	1.7e-11	25.28	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ2_MAIZE	7.1e-10	27.87	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ1_ARATH	1.6e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	3.5e-09	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]

BLAST of Cla021166 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	7.0e-81	86.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
D7TN65_VITVI	8.9e-60	65.79	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A0F7GYP0_9ROSI	3.2e-57	64.58	Photosynthetic NDH subcomplex L 2 OS=Melianthus villosus GN=2 PE=2 SV=1	[more]
A0A061EB55_THECC	4.1e-57	63.05	PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1	[more]
A0A0D2SAU6_GOSRA	6.0e-56	65.73	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1	[more]

BLAST of Cla021166 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432058\|ref\|XP_004133817.1\|	1.0e-80	86.89	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|659075001\|ref\|XP_008437911.1\|	1.2e-78	87.08	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|747049862\|ref\|XP_011070986.1\|	3.0e-61	67.18	PREDICTED: psbQ-like protein 1, chloroplastic [Sesamum indicum]	[more]
gi\|225425642\|ref\|XP_002272064.1\|	1.3e-59	65.79	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]
gi\|1009154202\|ref\|XP_015895040.1\|	1.7e-59	66.15	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Zizi...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044710	single-organism metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009543	chloroplast thylakoid lumen
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021166	Cla021166.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 59..184 score: 3.2
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 54..184 score: 2.5
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 73..184 score: 1.96
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 37..184 score: 5.5
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 37..184 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021166	Cla97C05G081100	Watermelon (97103) v2	wmwmbB206
Cla021166	Csa3G119660	Cucumber (Chinese Long) v2	cuwmB233
Cla021166	MELO3C006032	Melon (DHL92) v3.5.1	mewmB461
Cla021166	ClCG05G000900	Watermelon (Charleston Gray)	wcgwmB286
Cla021166	CSPI03G08010	Wild cucumber (PI 183967)	cpiwmB231
Cla021166	Cucsa.259150	Cucumber (Gy14) v1	cgywmB479
Cla021166	Lsi05G021130	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021166	CsGy3G008150	Cucumber (Gy14) v2	cgybwmB217
Cla021166	MELO3C006032.2	Melon (DHL92) v3.6.1	medwmB447
Cla021166	CsaV3_3G008130	Cucumber (Chinese Long) v3	cucwmB239
Cla021166	Bhi01G000341	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021166	Melon (DHL92) v3.6.1	medwmB018
Cla021166	Melon (DHL92) v3.6.1	medwmB511
Cla021166	Silver-seed gourd	carwmB0992
Cla021166	Cucumber (Chinese Long) v3	cucwmB338
Cla021166	Cucumber (Chinese Long) v3	cucwmB423
Cla021166	Watermelon (97103) v2	wmwmbB187
Cla021166	Watermelon (97103) v2	wmwmbB212
Cla021166	Wax gourd	wgowmB071
Cla021166	Wax gourd	wgowmB221
Cla021166	Watermelon (97103) v1	wmwmB118
Cla021166	Watermelon (97103) v1	wmwmB119
Cla021166	Cucumber (Gy14) v1	cgywmB149
Cla021166	Cucumber (Gy14) v1	cgywmB398
Cla021166	Cucurbita maxima (Rimu)	cmawmB004
Cla021166	Cucurbita maxima (Rimu)	cmawmB242
Cla021166	Cucurbita maxima (Rimu)	cmawmB799
Cla021166	Cucurbita maxima (Rimu)	cmawmB801
Cla021166	Cucurbita moschata (Rifu)	cmowmB231
Cla021166	Cucurbita moschata (Rifu)	cmowmB370
Cla021166	Cucurbita moschata (Rifu)	cmowmB793
Cla021166	Melon (DHL92) v3.5.1	mewmB022
Cla021166	Melon (DHL92) v3.5.1	mewmB470
Cla021166	Melon (DHL92) v3.5.1	mewmB526
Cla021166	Watermelon (Charleston Gray)	wcgwmB130
Cla021166	Watermelon (Charleston Gray)	wcgwmB291
Cla021166	Cucumber (Chinese Long) v2	cuwmB325
Cla021166	Cucumber (Chinese Long) v2	cuwmB397
Cla021166	Cucurbita pepo (Zucchini)	cpewmB613
Cla021166	Cucurbita pepo (Zucchini)	cpewmB704
Cla021166	Cucurbita pepo (Zucchini)	cpewmB845
Cla021166	Bottle gourd (USVL1VR-Ls)	lsiwmB018
Cla021166	Bottle gourd (USVL1VR-Ls)	lsiwmB372
Cla021166	Cucumber (Gy14) v2	cgybwmB300
Cla021166	Cucumber (Gy14) v2	cgybwmB373