Cucsa.259150.1 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.259150.1
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Photosynthetic NDH subcomplex L 2
Location	scaffold02229 : 5776960 .. 5777470 (-)
Sequence length	377

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGGTATGTACTTTTGTTACTCTTTGATTTTACTAGTTGAATACTTACTAATTAAATTTAGTGGAAAGTCTAATTATTGATTAATGTTTTTCTTATTGAAGATTAATTTGATTAATTTGGATGATGATGTGTTTCAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

mRNA sequence

CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Coding sequence (CDS)

CCCAAAGTTGGGGTACACATTCGTTCATTAAGGAGAGATATTTCGAGCCCGGTTTGTCAGCCGAGGAGGCAGTGGCGAGGATAAAACAAACAGCGGAAGGACTTCATAGCATCCGTGAGATGCTTGAGACGACGTCATGGAGGTATGTCATCTTCTACATTCGTTTGAAGTCGGCCTATCTGTCCCAAGACTTGAAAACTGCCATGACTACTTTGCCACAAGCTCGCCGAAACGATTTCGTTAAGACCGCTAATGAGTTGGTTGATAACATGGCTGAGTTGGATTATTACGTTCGCACACCCAAGGTGTACGAGTCATATTTGTACTACGAAAAGACATTGAAATCCATTGATGATCTGGTGGCTTTACTTGCATAG

Protein sequence

QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALLA*

Homology

[Close]

BLAST of Cucsa.259150.1 vs. Swiss-Prot
Match: PNSL2_ARATH (Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=1 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 6.9e-49
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  +REML+  SWRYVIFYIRLK AYL
Sbjct: 67  EKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYL 126

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDL  AM  LP++RRND+V+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSID++V
Sbjct: 127 SQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

Query: 121 ALLA 125
             LA
Sbjct: 187 EFLA 190

[Close]

BLAST of Cucsa.259150.1 vs. Swiss-Prot
Match: PSBQ2_MAIZE (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-10
Identity = 32/115 (27.83%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +KER++   L   EAVAR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 98  LKERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 157

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 158 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKL 212

[Close]

BLAST of Cucsa.259150.1 vs. Swiss-Prot
Match: PSBQ2_ARATH (Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-10
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cucsa.259150.1 vs. Swiss-Prot
Match: PSBQ1_MAIZE (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.7e-10
Identity = 31/115 (26.96%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +KER++   L   EA AR+K +A+ + +++ +++  +W YV   +RL+++YL  DLKT +
Sbjct: 102 LKERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVI 161

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
            + P+  +    +   +L   + +LD+  +     E+  Y+  T  ++ D++A L
Sbjct: 162 ASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKL 216

[Close]

BLAST of Cucsa.259150.1 vs. Swiss-Prot
Match: PSBQ1_ARATH (Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3)

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-10
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cucsa.259150.1 vs. TrEMBL
Match: A0A0A0L3W3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.5e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 64  QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 123

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 124 SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 183

Query: 121 ALLA 125
           ALLA
Sbjct: 184 ALLA 187

[Close]

BLAST of Cucsa.259150.1 vs. TrEMBL
Match: A0A0D2SAU6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 7.2e-53
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]

BLAST of Cucsa.259150.1 vs. TrEMBL
Match: D7TN65_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 9.3e-53
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAYL
Sbjct: 65  ENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAYL 124

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 125 SQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 184

Query: 121 ALLA 125
           A+LA
Sbjct: 185 AMLA 188

[Close]

BLAST of Cucsa.259150.1 vs. TrEMBL
Match: A0A061EB55_THECC (PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-52
Identity = 101/123 (82.11%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF++ER+FEPGLS E+A ARIKQTAEGLHS+REML+  SWRYV+FYIRLK AYL
Sbjct: 78  ENWGTRSFLRERFFEPGLSPEDAAARIKQTAEGLHSMREMLDNMSWRYVMFYIRLKQAYL 137

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQAR+ ++VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 138 SQDLKNAMSTLPQARKEEYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 197

Query: 121 ALL 124
           ALL
Sbjct: 198 ALL 200

[Close]

BLAST of Cucsa.259150.1 vs. TrEMBL
Match: A0A0B0NLL7_GOSAR (Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum GN=F383_08103 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 7.9e-52
Identity = 100/123 (81.30%), Postives = 114/123 (92.68%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYE TLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDLYVKTANELVDNMAEFDYYVRTPKVYESYLYYEMTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]

BLAST of Cucsa.259150.1 vs. TAIR10
Match: AT1G14150.1 (AT1G14150.1 PsbQ-like 2)

HSP 1 Score: 194.5 bits (493), Expect = 3.9e-50
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           + WGT SFIKE+YF PGLS E+A ARIKQTAEGL  +REML+  SWRYVIFYIRLK AYL
Sbjct: 67  EKWGTRSFIKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYL 126

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDL  AM  LP++RRND+V+ ANELV+NM+ELD+YVRTPKVYESYLYYEKTLKSID++V
Sbjct: 127 SQDLTNAMNILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186

Query: 121 ALLA 125
             LA
Sbjct: 187 EFLA 190

[Close]

BLAST of Cucsa.259150.1 vs. TAIR10
Match: AT4G05180.1 (AT4G05180.1 photosystem II subunit Q-2)

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 32/115 (27.83%), Postives = 65/115 (56.52%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   LS  EA AR K +A+ + +++  ++  +W YV   +RL+++YL  DL T +
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           +  P+  +        +L   +  LDY  R+    ++  YY +T+ S+++++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKL 229

[Close]

BLAST of Cucsa.259150.1 vs. TAIR10
Match: AT4G21280.2 (AT4G21280.2 photosystem II subunit QA)

HSP 1 Score: 65.1 bits (157), Expect = 3.5e-11
Identity = 30/115 (26.09%), Postives = 66/115 (57.39%), Query Frame = 1


Query: 9   IKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQDLKTAM 68
           +K+R++   L   EA AR K++A+ + +++ +++  +W YV   +R K++YL  DL T +
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168

Query: 69  TTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 124
           ++ P+  +        +L D +  LDY  +     ++  YY +T+ ++++++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKL 223

[Close]

BLAST of Cucsa.259150.1 vs. TAIR10
Match: AT3G01440.1 (AT3G01440.1 PsbQ-like 1)

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 29/121 (23.97%), Postives = 59/121 (48.76%), Query Frame = 1


Query: 4   GTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYLSQD 63
           GT +FIK+  +   +  +  + R+K+ A  L ++ +++   +  YV  Y+RLKS +L  D
Sbjct: 100 GTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFLFYD 159

Query: 64  LKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLVALL 123
               ++      +      AN L DN  +L+   +T  + E+   Y+ T   + +++  +
Sbjct: 160 FDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYKDTKFLLQEVMTRM 219

Query: 124 A 125
           A
Sbjct: 220 A 220

[Close]

BLAST of Cucsa.259150.1 vs. NCBI nr
Match: gi|449432058|ref|XP_004133817.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucumis sativus])

HSP 1 Score: 248.4 bits (633), Expect = 6.4e-63
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 64  QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 123

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 124 SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 183

Query: 121 ALLA 125
           ALLA
Sbjct: 184 ALLA 187

[Close]

BLAST of Cucsa.259150.1 vs. NCBI nr
Match: gi|659075001|ref|XP_008437911.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 245.7 bits (626), Expect = 4.2e-62
Identity = 122/124 (98.39%), Postives = 124/124 (100.00%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           QSWGTHSFIKERYFEPGLSA+EAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL
Sbjct: 63  QSWGTHSFIKERYFEPGLSADEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 122

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLKTAMTTLPQAR+NDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 123 SQDLKTAMTTLPQARQNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 182

Query: 121 ALLA 125
           ALLA
Sbjct: 183 ALLA 186

[Close]

BLAST of Cucsa.259150.1 vs. NCBI nr
Match: gi|1009154202|ref|XP_015895040.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 220.7 bits (561), Expect = 1.4e-54
Identity = 107/124 (86.29%), Postives = 116/124 (93.55%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           Q+WGT SFI+ER+FEPGLS E+AVARIKQTAEGLHSIR+MLE+ SWRYVIFYIRLKSAYL
Sbjct: 71  QNWGTRSFIRERFFEPGLSPEDAVARIKQTAEGLHSIRDMLESMSWRYVIFYIRLKSAYL 130

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP+ARR D+ K ANELVDNMAE DYYVRTPKVYESY+YYEKTLKSIDDLV
Sbjct: 131 SQDLKNAMTTLPEARRQDYAKVANELVDNMAEFDYYVRTPKVYESYVYYEKTLKSIDDLV 190

Query: 121 ALLA 125
           ALLA
Sbjct: 191 ALLA 194

[Close]

BLAST of Cucsa.259150.1 vs. NCBI nr
Match: gi|823265558|ref|XP_012465506.1| (PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Gossypium raimondii])

HSP 1 Score: 214.5 bits (545), Expect = 1.0e-52
Identity = 101/123 (82.11%), Postives = 115/123 (93.50%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGTHSF++ER+FEPGLS E+A ARIKQTAEGLHS+R+ML+T SWRYV+FYIRLK AYL
Sbjct: 75  ENWGTHSFLRERFFEPGLSPEDAAARIKQTAEGLHSMRDMLDTMSWRYVMFYIRLKQAYL 134

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AM+TLPQ R++ +VKTANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 135 SQDLKNAMSTLPQGRKDKYVKTANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 194

Query: 121 ALL 124
           ALL
Sbjct: 195 ALL 197

[Close]

BLAST of Cucsa.259150.1 vs. NCBI nr
Match: gi|225425642|ref|XP_002272064.1| (PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera])

HSP 1 Score: 214.2 bits (544), Expect = 1.3e-52
Identity = 103/124 (83.06%), Postives = 113/124 (91.13%), Query Frame = 1


Query: 1   QSWGTHSFIKERYFEPGLSAEEAVARIKQTAEGLHSIREMLETTSWRYVIFYIRLKSAYL 60
           ++WGT SF+KER+FEPGLS E+AVARI+QTAEGLHSIR MLET SWRYVIFYIRLKSAYL
Sbjct: 65  ENWGTRSFLKERFFEPGLSPEDAVARIRQTAEGLHSIRHMLETMSWRYVIFYIRLKSAYL 124

Query: 61  SQDLKTAMTTLPQARRNDFVKTANELVDNMAELDYYVRTPKVYESYLYYEKTLKSIDDLV 120
           SQDLK AMTTLP++RR  +   ANELVDNMAE DYYVRTPKVYESYLYYEKTLKSIDDLV
Sbjct: 125 SQDLKNAMTTLPESRRRSYANKANELVDNMAEFDYYVRTPKVYESYLYYEKTLKSIDDLV 184

Query: 121 ALLA 125
           A+LA
Sbjct: 185 AMLA 188

The following BLAST results are available for this feature:

BLAST of Cucsa.259150.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PNSL2_ARATH	6.9e-49	75.00	Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis t...	[more]
PSBQ2_MAIZE	1.3e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV...	[more]
PSBQ2_ARATH	2.2e-10	27.83	Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]
PSBQ1_MAIZE	3.7e-10	26.96	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV...	[more]
PSBQ1_ARATH	6.3e-10	26.09	Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=P...	[more]

BLAST of Cucsa.259150.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3W3_CUCSA	4.5e-63	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119660 PE=4 SV=1	[more]
A0A0D2SAU6_GOSRA	7.2e-53	82.11	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G087300 PE=4 SV=1	[more]
D7TN65_VITVI	9.3e-53	83.06	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0026g02680 PE=4 SV=...	[more]
A0A061EB55_THECC	2.1e-52	82.11	PsbQ-like 2 OS=Theobroma cacao GN=TCM_011674 PE=4 SV=1	[more]
A0A0B0NLL7_GOSAR	7.9e-52	81.30	Oxygen-evolving enhancer 3-2, chloroplastic-like protein OS=Gossypium arboreum G...	[more]

BLAST of Cucsa.259150.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G14150.1	3.9e-50	75.00	PsbQ-like 2	[more]
AT4G05180.1	1.2e-11	27.83	photosystem II subunit Q-2	[more]
AT4G21280.2	3.5e-11	26.09	photosystem II subunit QA	[more]
AT3G01440.1	3.1e-07	23.97	PsbQ-like 1	[more]

BLAST of Cucsa.259150.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449432058\|ref\|XP_004133817.1\|	6.4e-63	100.00	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Cucu...	[more]
gi\|659075001\|ref\|XP_008437911.1\|	4.2e-62	98.39	PREDICTED: psbQ-like protein 1, chloroplastic [Cucumis melo]	[more]
gi\|1009154202\|ref\|XP_015895040.1\|	1.4e-54	86.29	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Zizi...	[more]
gi\|823265558\|ref\|XP_012465506.1\|	1.0e-52	82.11	PREDICTED: photosynthetic NDH subunit of lumenal location 2, chloroplastic [Goss...	[more]
gi\|225425642\|ref\|XP_002272064.1\|	1.3e-52	83.06	PREDICTED: psbQ-like protein 1, chloroplastic [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008797	PSII_PsbQ
IPR023222	PsbQ-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0009523	photosystem II
GO:0009654	photosystem II oxygen evolving complex
GO:0019898	extrinsic component of membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009344	nitrite reductase complex [NAD(P)H]
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.259150	Cucsa.259150	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.259150.1	Cucsa.259150.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.259150.1.CDS.2	Cucsa.259150.1.CDS.2	CDS
Cucsa.259150.1.CDS.1	Cucsa.259150.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008797	Oxygen-evolving enhancer protein 3	PFAM	PF05757	PsbQ	coord: 2..124 score: 1.0
IPR023222	PsbQ-like domain	GENE3D	G3DSA:1.20.120.290		coord: 2..124 score: 3.5
IPR023222	PsbQ-like domain	unknown	SSF101112	Oxygen-evolving enhancer protein 3,	coord: 13..124 score: 7.45
None	No IPR available	PANTHER	PTHR33399	FAMILY NOT NAMED	coord: 1..124 score: 1.0
None	No IPR available	PANTHER	PTHR33399:SF5	PSBQ-LIKE PROTEIN 1, CHLOROPLASTIC	coord: 1..124 score: 1.0