Cucsa.133090 (gene) Cucumber (Gy14) v1

Overview
NameCucsa.133090
Typegene
OrganismCucumis sativus (Cucumber (Gy14) v1)
DescriptionAlba DNA/RNA-binding protein
Locationscaffold01037 : 889127 .. 890250 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGGTATATATACGTAAATCCCTTCTTTCACTTCTTTCCGTTTCTTTGATTATTCGTTTGTTATATATATATCTCAGAAAGAGATTATTATTACACCCATTTCGTTATTGTTATGTTCTTCTTCTTAGAAAATGGAATCCGAAATTAGTAATGTATGAAGGATTTATCAATAATCCGTGTTGTTCTTTTGATTTGATTTATGATTTGAGTAATTGTACTATCTGGGCAATTGTTTGATTTCAGTTTCTTTGTTGTTTTGGTTTGTTTTTTTTATTGGGAATTCTAAATCGATGTTTGCCCTAAATTCAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGGTATTGTTTCATTTCTTTTGGTTCTTTTAATTTATGGGTATATATCTGATGAATTTTTGGCTTTCTTGGCTCAAATTCTTCATTGTAATATGACAGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAGTATAATCCATGATCTTTAATGTTAATCTCTCTTGATAAAAATGGTGATTGTCTTTTACTGATAATCTTTGTGGTTTTGTTATGAAACAGAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTTGTTCAATTAGTTATGAATGTTGAGATATTGTTCTTGTAGGATGGGTTGATTTTGGATGATTATCTGCTTCTCAGTTCTTATAAAATGGTTTTAATCCTCTGGAAATCAGTCTCCAACATTCTTTTTTTTTTGTGTGTCTTAAAATAGCTAGATTGAGATATTGAGAGGGCTGTTTTTGGTTTATTTTGTGACAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG

mRNA sequence

CAATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG

Coding sequence (CDS)

CAATGGCCGCGACGATTGCTGTCTCGGGAGCCACACCCGCCACTGAAACACAAAAGAAGAACAGAATTCAGGTTTCTAATACCAAGAAGCCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTATATTCAACAGCATAATGAAGTTGAGCTTTCTGCCTTGGGAATGGCAATCACTACTGTTGTCACAATTGCGGAGATTCTTAAGAACAATGGGCTGGCTACAGAAAAGAAAGTTTTGACTTCTACAGTCGGCATGAAAGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATTGTTCTGGGGAAGTCTGAGAAGTTTGATTCTCTGATGACTGCGGCCACGGCAGTACCGGAGACAGTGGTGGCAGTTGCAGCAGCTGCTGAGGAAGAGAAGAAAGCAGAGGAAAGCAAGGAGGAGCAGTAG

Protein sequence

MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAVAAAAEEEKKAEESKEEQ*
Homology
[Close]
BLAST of Cucsa.133090 vs. Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 6.7e-40
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 1 

Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 124 VA 126
            A
Sbjct: 125 EA 126

[Close]
BLAST of Cucsa.133090 vs. TrEMBL
Match: A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 2.8e-69
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 ETVVAVAAAAEEEKKAEESKEEQ 144
           ETVVAVAAAAEEEKKAEESKEEQ
Sbjct: 121 ETVVAVAAAAEEEKKAEESKEEQ 143

[Close]
BLAST of Cucsa.133090 vs. TrEMBL
Match: A0A0D3DCA9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.2e-49
Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 1 

Query: 2   AATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 61
           A  + VS  T A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 17  ATNLIVSATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 76

Query: 62  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 121
           TI+EILKNNGLATEKKVLTSTVGMKDENKGR+VQKAKIEIVLGKS+KFDSLMT  T   +
Sbjct: 77  TISEILKNNGLATEKKVLTSTVGMKDENKGRVVQKAKIEIVLGKSDKFDSLMTPVT--KD 136

Query: 122 TVVAVAAAAEEEKKAE-ESKEE 143
           TV    A   EEK  E E+K E
Sbjct: 137 TVKEEKAVNTEEKPIEAEAKPE 156

[Close]
BLAST of Cucsa.133090 vs. TrEMBL
Match: A0A0L9THG8_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s000300 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-48
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 1 

Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           AT+A +   P  ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAI TVVT
Sbjct: 2   ATVAAAATLP-DETPKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFD+LM++    PE 
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMSSTKTEPE- 121

Query: 123 VVAVAAAAEEEK 135
               AAAAE++K
Sbjct: 122 ----AAAAEDKK 127

[Close]
BLAST of Cucsa.133090 vs. TrEMBL
Match: A0A0S3SQ60_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G160900 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.7e-48
Identity = 108/132 (81.82%), Postives = 115/132 (87.12%), Query Frame = 1 

Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           AT+A +   P  ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAI TVVT
Sbjct: 2   ATVAAAATLP-DETPKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAIATVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFD+LM++    PE 
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMSSTKTEPE- 121

Query: 123 VVAVAAAAEEEK 135
               AAAAE++K
Sbjct: 122 ----AAAAEDKK 127

[Close]
BLAST of Cucsa.133090 vs. TrEMBL
Match: A0A067JVY8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.4e-47
Identity = 105/119 (88.24%), Postives = 105/119 (88.24%), Query Frame = 1 

Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           A  A    T A    KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 21  AATATEMVTTAQGQHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 80

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA  VPE
Sbjct: 81  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMDAANTVPE 139

[Close]
BLAST of Cucsa.133090 vs. TAIR10
Match: AT3G04620.1 (AT3G04620.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 188.0 bits (476), Expect = 4.2e-48
Identity = 103/138 (74.64%), Postives = 111/138 (80.43%), Query Frame = 1 

Query: 6   AVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 65
           A +  T   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+E
Sbjct: 24  ATTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISE 83

Query: 66  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT--AVPETV 125
           ILKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T    PE  
Sbjct: 84  ILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE- 143

Query: 126 VAVAAAAEEEKKAEESKE 142
               A+AE E   E  +E
Sbjct: 144 ---EASAETEASVEAQEE 157

[Close]
BLAST of Cucsa.133090 vs. TAIR10
Match: AT1G29250.1 (AT1G29250.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-42
Identity = 91/139 (65.47%), Postives = 107/139 (76.98%), Query Frame = 1 

Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+
Sbjct: 5   TEGVNNMNLAVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
           AEILKNNG A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM          
Sbjct: 65  AEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELM---------- 124

Query: 124 VAVAAAAEEEKKAEESKEE 143
               AAA EEK+A E++E+
Sbjct: 125 ----AAANEEKEAAEAQEQ 129

[Close]
BLAST of Cucsa.133090 vs. TAIR10
Match: AT2G34160.1 (AT2G34160.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 164.9 bits (416), Expect = 3.8e-41
Identity = 86/122 (70.49%), Postives = 98/122 (80.33%), Query Frame = 1 

Query: 4   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           T  V+    AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+
Sbjct: 5   TDGVNNMNLATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTV 64

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 123
            EILKNNG A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E  
Sbjct: 65  TEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

Query: 124 VA 126
            A
Sbjct: 125 EA 126

[Close]
BLAST of Cucsa.133090 vs. NCBI nr
Match: gi|449443233|ref|XP_004139384.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 269.2 bits (687), Expect = 4.0e-69
Identity = 143/143 (100.00%), Postives = 143/143 (100.00%), Query Frame = 1 

Query: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 ETVVAVAAAAEEEKKAEESKEEQ 144
           ETVVAVAAAAEEEKKAEESKEEQ
Sbjct: 121 ETVVAVAAAAEEEKKAEESKEEQ 143

[Close]
BLAST of Cucsa.133090 vs. NCBI nr
Match: gi|659070696|ref|XP_008456222.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo])

HSP 1 Score: 263.1 bits (671), Expect = 2.9e-67
Identity = 139/141 (98.58%), Postives = 140/141 (99.29%), Query Frame = 1 

Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET
Sbjct: 62  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 121

Query: 123 VVAVAAAAEEEKKAEESKEEQ 144
           VVAVAAA EEEKKAEE+KEEQ
Sbjct: 122 VVAVAAAGEEEKKAEENKEEQ 142

[Close]
BLAST of Cucsa.133090 vs. NCBI nr
Match: gi|922528830|ref|XP_013596952.1| (PREDICTED: uncharacterized protein At2g34160-like [Brassica oleracea var. oleracea])

HSP 1 Score: 202.2 bits (513), Expect = 6.1e-49
Identity = 112/142 (78.87%), Postives = 118/142 (83.10%), Query Frame = 1 

Query: 2   AATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 61
           A  + VS  T A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV
Sbjct: 17  ATNLIVSATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVV 76

Query: 62  TIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPE 121
           TI+EILKNNGLATEKKVLTSTVGMKDENKGR+VQKAKIEIVLGKS+KFDSLMT  T   +
Sbjct: 77  TISEILKNNGLATEKKVLTSTVGMKDENKGRVVQKAKIEIVLGKSDKFDSLMTPVT--KD 136

Query: 122 TVVAVAAAAEEEKKAE-ESKEE 143
           TV    A   EEK  E E+K E
Sbjct: 137 TVKEEKAVNTEEKPIEAEAKPE 156

[Close]
BLAST of Cucsa.133090 vs. NCBI nr
Match: gi|729434139|ref|XP_010519975.1| (PREDICTED: uncharacterized protein At2g34160-like [Tarenaya hassleriana])

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48
Identity = 109/137 (79.56%), Postives = 116/137 (84.67%), Query Frame = 1 

Query: 7   VSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 66
           V+  T A E QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EI
Sbjct: 23  VAEETAAAENQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEI 82

Query: 67  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETVVAV 126
           LKNNGLA EKKVLTSTVGMKDENKGR+VQKAKIEIVLGKS+KFDSLMT AT     V   
Sbjct: 83  LKNNGLAIEKKVLTSTVGMKDENKGRVVQKAKIEIVLGKSDKFDSLMTPAT-TEAPVTET 142

Query: 127 AAAAEEEKKAEESKEEQ 144
           AAA E E KA E+  ++
Sbjct: 143 AAAVEAEAKAPEATAKE 158

[Close]
BLAST of Cucsa.133090 vs. NCBI nr
Match: gi|1009117586|ref|XP_015875397.1| (PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba])

HSP 1 Score: 201.1 bits (510), Expect = 1.4e-48
Identity = 113/140 (80.71%), Postives = 120/140 (85.71%), Query Frame = 1 

Query: 3   ATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 62
           AT+ VS  + A ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT
Sbjct: 2   ATMVVS--SQAIETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVT 61

Query: 63  IAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPET 122
           IAEILKNNGLATEKKV TSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAA      
Sbjct: 62  IAEILKNNGLATEKKVSTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAA------ 121

Query: 123 VVAVAAAAEEEKKAEESKEE 143
            VA A A E+++  +E  +E
Sbjct: 122 -VASATATEDKENDKEIGKE 132

The following BLAST results are available for this feature:
BLAST of Cucsa.133090 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y2416_ARATH6.7e-4070.49Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1[more]
BLAST of Cucsa.133090 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG69_CUCSA2.8e-69100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1[more]
A0A0D3DCA9_BRAOL4.2e-4978.87Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1[more]
A0A0L9THG8_PHAAN4.7e-4881.82Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan845s000300 PE=4 SV=1[more]
A0A0S3SQ60_PHAAN4.7e-4881.82Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.08G160900 PE=... [more]
A0A067JVY8_JATCU1.4e-4788.24Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1[more]
BLAST of Cucsa.133090 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04620.14.2e-4874.64 Alba DNA/RNA-binding protein[more]
AT1G29250.11.2e-4265.47 Alba DNA/RNA-binding protein[more]
AT2G34160.13.8e-4170.49 Alba DNA/RNA-binding protein[more]
BLAST of Cucsa.133090 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443233|ref|XP_004139384.1|4.0e-69100.00PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus][more]
gi|659070696|ref|XP_008456222.1|2.9e-6798.58PREDICTED: uncharacterized protein At2g34160 [Cucumis melo][more]
gi|922528830|ref|XP_013596952.1|6.1e-4978.87PREDICTED: uncharacterized protein At2g34160-like [Brassica oleracea var. olerac... [more]
gi|729434139|ref|XP_010519975.1|1.4e-4879.56PREDICTED: uncharacterized protein At2g34160-like [Tarenaya hassleriana][more]
gi|1009117586|ref|XP_015875397.1|1.4e-4880.71PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002775DNA/RNA-bd_Alba-like
IPR014560UCP030333_Alba
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006302 double-strand break repair
biological_process GO:0010332 response to gamma radiation
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cucsa.133090.1Cucsa.133090.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3DG3DSA:3.30.110.20coord: 18..122
score: 8.3
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 20..82
score: 2.2
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 19..114
score: 1.31
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPIRPIRSF030333UCP030333_Albacoord: 1..142
score: 8.1
NoneNo IPR availableunknownCoilCoilcoord: 126..143
scor
NoneNo IPR availablePANTHERPTHR31947FAMILY NOT NAMEDcoord: 1..142
score: 2.4
NoneNo IPR availablePANTHERPTHR31947:SF5SUBFAMILY NOT NAMEDcoord: 1..142
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cucsa.133090Cla021562Watermelon (97103) v1cgywmB221
Cucsa.133090Cla019790Watermelon (97103) v1cgywmB223
Cucsa.133090Csa2G010240Cucumber (Chinese Long) v2cgycuB184
Cucsa.133090MELO3C004397Melon (DHL92) v3.5.1cgymeB216
Cucsa.133090ClCG02G016810Watermelon (Charleston Gray)cgywcgB218
Cucsa.133090CSPI02G02790Wild cucumber (PI 183967)cgycpiB187
Cucsa.133090CmaCh05G012170Cucurbita maxima (Rimu)cgycmaB0365
Cucsa.133090CmaCh12G011330Cucurbita maxima (Rimu)cgycmaB0364
Cucsa.133090CmoCh12G011530Cucurbita moschata (Rifu)cgycmoB0359
Cucsa.133090Lsi11G004260Bottle gourd (USVL1VR-Ls)cgylsiB205
Cucsa.133090Lsi05G016770Bottle gourd (USVL1VR-Ls)cgylsiB208
Cucsa.133090Cp4.1LG00g04330Cucurbita pepo (Zucchini)cgycpeB0350
Cucsa.133090Cp4.1LG11g09900Cucurbita pepo (Zucchini)cgycpeB0351
Cucsa.133090Cp4.1LG07g09860Cucurbita pepo (Zucchini)cgycpeB0356
Cucsa.133090MELO3C006467.2Melon (DHL92) v3.6.1cgymedB215
Cucsa.133090MELO3C004397.2Melon (DHL92) v3.6.1cgymedB213
Cucsa.133090CsaV3_3G012560Cucumber (Chinese Long) v3cgycucB191
Cucsa.133090Cla97C05G085610Watermelon (97103) v2cgywmbB214
Cucsa.133090Carg17605Silver-seed gourdcarcgyB0804
Cucsa.133090Carg22995Silver-seed gourdcarcgyB1188
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cucsa.133090Cucsa.254970Cucumber (Gy14) v1cgycgyB079
The following block(s) are covering this gene:
GeneOrganismBlock
Cucsa.133090Watermelon (97103) v2cgywmbB213
Cucsa.133090Wax gourdcgywgoB251
Cucsa.133090Cucurbita moschata (Rifu)cgycmoB0362
Cucsa.133090Silver-seed gourdcarcgyB0883
Cucsa.133090Cucumber (Chinese Long) v3cgycucB190