Carg17605 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg17605
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alba DNA/RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_183 : 600509 .. 601800 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGAAGATATGACAACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGGTATTCATAAATCGTTCTCTCGTTCTTTTCAATTTGGTTACGTTGAGCGAGGATTTGGAATTTATTCTGATTTTGTTTGGTTCTCGAGAAATGGAATTGAAATGTGTAATGTAAGAACGAACGACGAATCGGTGGGATTCTTTTGATTTGTTTTATGATTCGAACGATTTCGTTCGGATAATCGTTTGATTTTAGTTTCTGGATTGTTTAGTTTTATTGGAAATTTGAATCATCTTGCTCTCAGTTTGCCCTAAGATCCCCTTCGTTATCGAGATTCGAGATTACGATCTTAGCAAGATTTTGAAATTCATTATGTTTTTGTTTGATTCTTGAAAAAATGGAATCGAAATGTATAATCTAAGAACGAACGATGAATCGGTGCATTTCTTTTTATTTGCTTTATGATTCGAACAATTTCATTTAGATAATCGTTTGATTTTAGTTTCTTGGTTTAAAAAATCAAGATTCGAGATTATGATTCTTTACATCAATGTGTTTAATTCTTGATTCAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGGTACGGTTTTAGTTCTTGAAAATCTTTTAATTTTTTAGCTATCGGTACATGAATTTTTTGATTTTTTTTATCTCAAATTCTACAGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAGTAATTCTGTTATCATATTTGTTCATTCACGTAATTTCTTGGTAAAATGGTTATCACTGATAATTTGTATGATTTTGTTGTGAAACAGAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTAGTTCAGAAAGCTAAGGTTCGTTCATTTTTCTTAGTTAATGATAAGTTTTTCGTGTTAATGATAAGCTAAGGTTCGTTCAAATATCATACCATTGTGGAGAGTCGTGTTCATCTAACATTTTGAAACTTTTTAGCTATGAACGATTCTTGTGGGATTGAGTTTTGAAACGTTTCTTGTTTTGGGTCGATTTTGATAGATTGAGATTGTTCTGGGAAAGTCGGAGAAATTTGATTCTTTGATGACGGCGGCCACGGTGACGGCGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

mRNA sequence

ATAGAAGATATGACAACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTAGTTCAGAAAGCTAAGTCGGAGAAATTTGATTCTTTGATGACGGCGGCCACGGTGACGGCGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

Coding sequence (CDS)

ATAGAAGATATGACAACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTAGTTCAGAAAGCTAAGTCGGAGAAATTTGATTCTTTGATGACGGCGGCCACGGTGACGGCGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

Protein sequence

IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKSEKFDSLMTAATVTAEAAAGGGEEKKKAGEESKEGQ

Homology

[Close]

BLAST of Carg17605 vs. NCBI nr
Match: XP_022965411.1 (uncharacterized protein At2g34160-like [Cucurbita maxima])

HSP 1 Score: 195.7 bits (496), Expect = 1.0e-46
Identity = 108/115 (93.91%), Postives = 108/115 (93.91%), Query Frame = 0


Query: 1   IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 33  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 92

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMTA
Sbjct: 93  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 147

[Close]

BLAST of Carg17605 vs. NCBI nr
Match: XP_023537985.1 (uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.9 bits (481), Expect = 5.6e-45
Identity = 105/112 (93.75%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 43  IEDMTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 102

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSL 106
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSL
Sbjct: 103 VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 154

[Close]

BLAST of Carg17605 vs. NCBI nr
Match: XP_022938043.1 (uncharacterized protein At2g34160-like [Cucurbita moschata])

HSP 1 Score: 185.3 bits (469), Expect = 1.4e-43
Identity = 103/111 (92.79%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 4   MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           MTTTIAVS ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 1   MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMT 108
           AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMT
Sbjct: 61  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMT 111

[Close]

BLAST of Carg17605 vs. NCBI nr
Match: XP_022143158.1 (uncharacterized protein At2g34160 [Momordica charantia])

HSP 1 Score: 184.9 bits (468), Expect = 1.8e-43
Identity = 102/109 (93.58%), Postives = 102/109 (93.58%), Query Frame = 0


Query: 7   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 66
           TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI
Sbjct: 3   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 62

Query: 67  LKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           LKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMTA
Sbjct: 63  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 111

[Close]

BLAST of Carg17605 vs. NCBI nr
Match: XP_004139384.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus] >KGN60788.1 hypothetical protein Csa_2G010240 [Cucumis sativus])

HSP 1 Score: 180.6 bits (457), Expect = 3.4e-42
Identity = 103/115 (89.57%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 4   MTTTIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 63
           M  TIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 64  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMTA
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 115

[Close]

BLAST of Carg17605 vs. TAIR10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 154.1 bits (388), Expect = 6.2e-38
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0


Query: 18  KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKK 77
           KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKK
Sbjct: 36  KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKK 95

Query: 78  VLTSTVGMKDENKGRLVQKA-------KSEKFDSLM 107
           VLTSTVGMKDE KG++VQKA       KS+KFDSL+
Sbjct: 96  VLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLV 131

[Close]

BLAST of Carg17605 vs. TAIR10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 13  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 72
           A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct: 14  AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query: 73  ATEKKVLTSTVGMKDENKGRLVQK-------AKSEKFDSLMTA 109
           A EKK++TSTV +KD+++GR VQK       AKSEKFD LM A
Sbjct: 74  AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAA 116

[Close]

BLAST of Carg17605 vs. TAIR10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 13  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 72
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 73  ATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           A EKK++TSTV +KD+ +GR VQKA       KSEKFD LM A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAA 116

[Close]

BLAST of Carg17605 vs. Swiss-Prot
Match: sp|O22969|Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 2.0e-33
Identity = 76/103 (73.79%), Postives = 87/103 (84.47%), Query Frame = 0


Query: 13  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 72
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 73  ATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           A EKK++TSTV +KD+ +GR VQKA       KSEKFD LM A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAA 116

[Close]

BLAST of Carg17605 vs. TrEMBL
Match: tr|A0A0A0LG69|A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 2.3e-42
Identity = 103/115 (89.57%), Postives = 103/115 (89.57%), Query Frame = 0


Query: 4   MTTTIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 63
           M  TIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 64  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMTA
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 115

[Close]

BLAST of Carg17605 vs. TrEMBL
Match: tr|A0A1S3C2U1|A0A1S3C2U1_CUCME (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 5.0e-42
Identity = 102/112 (91.07%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 7   TIAVSG---ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 66
           TIAVSG   ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62

Query: 67  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKA       KSEKFDSLMTA
Sbjct: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTA 114

[Close]

BLAST of Carg17605 vs. TrEMBL
Match: tr|A0A2I4DRH2|A0A2I4DRH2_9ROSI (uncharacterized protein At2g34160-like OS=Juglans regia OX=51240 GN=LOC108982742 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 3.6e-40
Identity = 94/110 (85.45%), Postives = 98/110 (89.09%), Query Frame = 0


Query: 6   TTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 65
           TT+AVS   E QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE
Sbjct: 2   TTVAVSAPIEPQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAE 61

Query: 66  ILKNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMTA 109
           ILKNNGLAT+KKV TST+GMKDENKGRL+QKA       KSEKFDSLMTA
Sbjct: 62  ILKNNGLATQKKVCTSTIGMKDENKGRLIQKAKIEIVLGKSEKFDSLMTA 111

[Close]

BLAST of Carg17605 vs. TrEMBL
Match: tr|A0A0D3DCA9|A0A0D3DCA9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=106305126 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 3.4e-38
Identity = 91/106 (85.85%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 9   AVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 68
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 69  NNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMT 108
           NNGLATEKKVLTSTVGMKDENKGR+VQKA       KS+KFDSLMT
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVVQKAKIEIVLGKSDKFDSLMT 129

[Close]

BLAST of Carg17605 vs. TrEMBL
Match: tr|V4K455|V4K455_EUTSA (Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005588mg PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 5.8e-38
Identity = 89/107 (83.18%), Postives = 96/107 (89.72%), Query Frame = 0


Query: 8   IAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEIL 67
           ++ +   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EIL
Sbjct: 22  LSATTVVETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEIL 81

Query: 68  KNNGLATEKKVLTSTVGMKDENKGRLVQKA-------KSEKFDSLMT 108
           KNNGLATEKKVLTSTVGMKDENKGR+VQKA       KS+KFDSL+T
Sbjct: 82  KNNGLATEKKVLTSTVGMKDENKGRIVQKAKIEIVLGKSDKFDSLIT 128

The following BLAST results are available for this feature:

BLAST of Carg17605 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022965411.1	1.0e-46	93.91	uncharacterized protein At2g34160-like [Cucurbita maxima]	[more]
XP_023537985.1	5.6e-45	93.75	uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]	[more]
XP_022938043.1	1.4e-43	92.79	uncharacterized protein At2g34160-like [Cucurbita moschata]	[more]
XP_022143158.1	1.8e-43	93.58	uncharacterized protein At2g34160 [Momordica charantia]	[more]
XP_004139384.1	3.4e-42	89.57	PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus] >KGN60788.1 hypot...	[more]

BLAST of Carg17605 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04620.1	6.2e-38	86.46	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.1e-34	73.79	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	1.1e-34	73.79	Alba DNA/RNA-binding protein	[more]

BLAST of Carg17605 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22969\|Y2416_ARATH	2.0e-33	73.79	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Carg17605 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LG69\|A0A0A0LG69_CUCSA	2.3e-42	89.57	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1	[more]
tr\|A0A1S3C2U1\|A0A1S3C2U1_CUCME	5.0e-42	91.07	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
tr\|A0A2I4DRH2\|A0A2I4DRH2_9ROSI	3.6e-40	85.45	uncharacterized protein At2g34160-like OS=Juglans regia OX=51240 GN=LOC108982742...	[more]
tr\|A0A0D3DCA9\|A0A0D3DCA9_BRAOL	3.4e-38	85.85	Uncharacterized protein OS=Brassica oleracea var. oleracea OX=109376 GN=10630512...	[more]
tr\|V4K455\|V4K455_EUTSA	5.8e-38	83.18	Uncharacterized protein OS=Eutrema salsugineum OX=72664 GN=EUTSA_v10005588mg PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR014560	UCP030333_Alba
IPR036882	Alba-like_dom_sf
IPR002775	DNA/RNA-bd_Alba-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg17605-RA	Carg17605-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 20..82 e-value: 1.7E-13 score: 50.1
IPR036882	Alba-like domain superfamily	GENE3D	G3DSA:3.30.110.20		coord: 18..120 e-value: 1.6E-39 score: 136.3
IPR036882	Alba-like domain superfamily	SUPERFAMILY	SSF82704	AlbA-like	coord: 19..96
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..132 e-value: 8.7E-53 score: 176.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 113..134
None	No IPR available	PANTHER	PTHR31947:SF5	SUBFAMILY NOT NAMED	coord: 11..122
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 11..122

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg17605	Cla019790	Watermelon (97103) v1	carwmB0714
Carg17605	Csa2G010240	Cucumber (Chinese Long) v2	carcuB0735
Carg17605	MELO3C004397	Melon (DHL92) v3.5.1	carmeB0711
Carg17605	ClCG02G016810	Watermelon (Charleston Gray)	carwcgB0692
Carg17605	CSPI02G02790	Wild cucumber (PI 183967)	carcpiB0751
Carg17605	Cucsa.133090	Cucumber (Gy14) v1	carcgyB0804
Carg17605	CmaCh05G012170	Cucurbita maxima (Rimu)	carcmaB1001
Carg17605	CmaCh12G011330	Cucurbita maxima (Rimu)	carcmaB1000
Carg17605	CmoCh12G011530	Cucurbita moschata (Rifu)	carcmoB0973
Carg17605	Lsi11G004260	Bottle gourd (USVL1VR-Ls)	carlsiB654
Carg17605	Cp4.1LG00g04330	Cucurbita pepo (Zucchini)	carcpeB1003
Carg17605	Cp4.1LG11g09900	Cucurbita pepo (Zucchini)	carcpeB1005
Carg17605	Cp4.1LG07g09860	Cucurbita pepo (Zucchini)	carcpeB1006
Carg17605	CsGy2G002900	Cucumber (Gy14) v2	carcgybB0713
Carg17605	MELO3C004397.2	Melon (DHL92) v3.6.1	carmedB0724
Carg17605	Cla97C02G042600	Watermelon (97103) v2	carwmbB0746

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg17605	Carg22995	Silver-seed gourd	carcarB588

The following block(s) are covering this gene:


Gene	Organism	Block
Carg17605	Cucurbita moschata (Rifu)	carcmoB0974
Carg17605	Cucumber (Chinese Long) v3	carcucB0754