CmoCh12G011530 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G011530
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Alba DNA/RNA-binding protein
Location	Cmo_Chr12 : 10446051 .. 10447454 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGACGACGATTGCGGTATCGAGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGGTATTCATAAATCGTTCTCTCGTTCTTTTCAATTTGGTTACGTTGAGCGAGGATTTGGAATTTATTCTGGTTTTGTTTGGTTCTCGAGAAATGGAATTGAAATGTGTAATGTAAGAACGAACGACGAATCGGTGGGATTCTTTTGATTTGTTTTATGATTCGAACGATTTCGTTCGGATAATCGTTTGATTTTAGTTTCTGGATTGTTTAGTTTTATTGGAAATTTGAATCATCTTGCTCTCAGTTTGCCCTAAGATCCCCTTCGTTATCGAGATTCGAGATTACGATCTCAGCAAGATTTTGAAATTCATTATGTTTTTGTTTGATTCTCGAAGAAATGGAATCGAAATGTATAATCTAAGAACGAACGATGAATCAGTGCATTTATTTTTATTTGCTTTATGATTCGAACAATTTCATTTAGATAATCGTTTGATTTTAGTTTCTTGGTTTAAAAAATCAAGATTCGAGATTATGATTCTTTACATCAATGTGTTTAATTCTTGATTCAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGGTACGGTTTTAGTTCTTGAAAATCTTTTAATTCTTTAGCTATCGGTACATGAATTTTTTTGATTTTTTTATCTCAAATTCTACAGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAGTAATTTTGTTATCATATTCGTTCATTCACGTAATTTCTTGGTAAAATGGTTATCACTGATAATTTGTATGGTTTTGTTATGAAATAGAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTCGTTCATTTTTCTTAATTATTGATAAGCTTTTCGTGTTTTGTGTTGGATGATGAAAGTCCCATGTCGGCTAATTTAGGGAATGATCATGAGTTTATAATAAAATAATATTATCTCCATTGGTACGAGGCCATCTAGGAAGCTCGAAACAAAGCCATGAGAGTTTATGCTCAAAGTGGACAATATCATACCACAATTGTGGAGAGTCGTGTTCATTTAACAATTTGAAACTTTTTAGCTATGAACGGTTCTTGTGGGATTGAGTTTTGAAATGTTTCTTATTTTGGGTCGATTTTGATAGATTGAGATTGTTCTGGGAAAGTCGGAGAAATTTGATTCTCTGATGACTGCGGCCACGGTAGCAGCGGAGGCGGCAGCGGGAGGCCGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

mRNA sequence

ATGACGACGACGATTGCGGTATCGAGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGATTGAGATTGTTCTGGGAAAGTCGGAGAAATTTGATTCTCTGATGACTGCGGCCACGGTAGCAGCGGAGGCGGCAGCGGGAGGCCGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

Coding sequence (CDS)

ATGACGACGACGATTGCGGTATCGAGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAACTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGATTGAGATTGTTCTGGGAAAGTCGGAGAAATTTGATTCTCTGATGACTGCGGCCACGGTAGCAGCGGAGGCGGCAGCGGGAGGCCGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

Homology

[Close]

BLAST of CmoCh12G011530 vs. Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 1.5e-33
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMTAATVAAEAA 116
           A EKK++TSTV +KD+ +GR      IEI L KSEKFD LM AA    E A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

[Close]

BLAST of CmoCh12G011530 vs. TrEMBL
Match: A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 6.9e-46
Identity = 120/144 (83.33%), Postives = 121/144 (84.03%), Query Frame = 1


Query: 1   MTTTIAVSRAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVS AT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLMTAAT   
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 E---AAAGGREEKKKAGEESKEGQ 134
           E   A A   EE+KKA EESKE Q
Sbjct: 121 ETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]

BLAST of CmoCh12G011530 vs. TrEMBL
Match: B9S7H5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.1e-40
Identity = 99/116 (85.34%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           A   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL
Sbjct: 38  AQTQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 97

Query: 70  ATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAEAAAGGRE 121
           ATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLM AA  A EA    +E
Sbjct: 98  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMEAANTATEAETQDKE 153

[Close]

BLAST of CmoCh12G011530 vs. TrEMBL
Match: A0A078DFW3_BRANA (BnaA06g29200D protein OS=Brassica napus GN=BnaA06g29200D PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 101/130 (77.69%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 6   AVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLMTAAT--VAAEAAAGGREEKK 125
           NNGLATEKKVLTSTVGMKDENKGR+IEIVLGKS+KFDSLMT  T     E  A   EE+ 
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVIEIVLGKSDKFDSLMTPVTKDTVKEEKAVNTEEEP 143

Query: 126 KAGEESKEGQ 134
              E   EG+
Sbjct: 144 IETEVKPEGK 153

[Close]

BLAST of CmoCh12G011530 vs. TrEMBL
Match: M4D0K5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.5e-40
Identity = 101/130 (77.69%), Postives = 107/130 (82.31%), Query Frame = 1


Query: 6   AVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLMTAAT--VAAEAAAGGREEKK 125
           NNGLATEKKVLTSTVGMKDENKGR+IEIVLGKS+KFDSLMT  T     E  A   EE+ 
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVIEIVLGKSDKFDSLMTPVTKDTVKEEKAVNTEEEP 143

Query: 126 KAGEESKEGQ 134
              E   EG+
Sbjct: 144 IETEVKPEGK 153

[Close]

BLAST of CmoCh12G011530 vs. TrEMBL
Match: A0A067JVY8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.9e-40
Identity = 101/124 (81.45%), Postives = 103/124 (83.06%), Query Frame = 1


Query: 2   TTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 61
           T T  V+ A    KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 23  TATEMVTTAQGQHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 82

Query: 62  EILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAEAAA 121
           EILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLM AA    EA A
Sbjct: 83  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMDAANTVPEADA 142

[Close]

BLAST of CmoCh12G011530 vs. TAIR10
Match: AT3G04620.1 (AT3G04620.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 159.5 bits (402), Expect = 1.5e-39
Identity = 98/135 (72.59%), Postives = 105/135 (77.78%), Query Frame = 1


Query: 2   TTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 61
           TTT A     ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+
Sbjct: 26  TTTTAT---VETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIS 85

Query: 62  EILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAAT---VAAE 121
           EILKNNGLATEKKVLTSTVGMKDE KG++     IEIVLGKS+KFDSL+   T      E
Sbjct: 86  EILKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEE 145

Query: 122 AAAGGREEKKKAGEE 129
            A+   E   +A EE
Sbjct: 146 EASAETEASVEAQEE 157

[Close]

BLAST of CmoCh12G011530 vs. TAIR10
Match: AT1G29250.1 (AT1G29250.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 147.1 bits (370), Expect = 7.6e-36
Identity = 80/111 (72.07%), Postives = 91/111 (81.98%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct: 14  AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMTAATVAAEAA 116
           A EKK++TSTV +KD+++GR      IEI L KSEKFD LM AA    EAA
Sbjct: 74  AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKEAA 124

[Close]

BLAST of CmoCh12G011530 vs. TAIR10
Match: AT2G34160.1 (AT2G34160.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 143.7 bits (361), Expect = 8.4e-35
Identity = 79/111 (71.17%), Postives = 90/111 (81.08%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMTAATVAAEAA 116
           A EKK++TSTV +KD+ +GR      IEI L KSEKFD LM AA    E A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDA 124

[Close]

BLAST of CmoCh12G011530 vs. NCBI nr
Match: gi|449443233|ref|XP_004139384.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 9.9e-46
Identity = 120/144 (83.33%), Postives = 121/144 (84.03%), Query Frame = 1


Query: 1   MTTTIAVSRAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVS AT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLMTAAT   
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 E---AAAGGREEKKKAGEESKEGQ 134
           E   A A   EE+KKA EESKE Q
Sbjct: 121 ETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]

BLAST of CmoCh12G011530 vs. NCBI nr
Match: gi|659070696|ref|XP_008456222.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo])

HSP 1 Score: 189.5 bits (480), Expect = 3.8e-45
Identity = 118/142 (83.10%), Postives = 119/142 (83.80%), Query Frame = 1


Query: 4   TIAVSRAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           TIAVS AT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAE-- 123
           AEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLMTAAT   E  
Sbjct: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 122

Query: 124 --AAAGGREEKKKAGEESKEGQ 134
              AA G EEKK   EE+KE Q
Sbjct: 123 VAVAAAGEEEKK--AEENKEEQ 142

[Close]

BLAST of CmoCh12G011530 vs. NCBI nr
Match: gi|1009117586|ref|XP_015875397.1| (PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba])

HSP 1 Score: 185.7 bits (470), Expect = 5.4e-44
Identity = 109/141 (77.30%), Postives = 116/141 (82.27%), Query Frame = 1


Query: 1   MTTTIAVSRATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60
           M T +  S+A ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 1   MATMVVSSQAIETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60

Query: 61  AEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAEAA 120
           AEILKNNGLATEKKV TSTVGMKDENKGRL     IEIVLGKSEKFDSLMTAA  +A A 
Sbjct: 61  AEILKNNGLATEKKVSTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAVASATAT 120

Query: 121 AG-------GREEKKKAGEES 130
                    G+E KK++GEE+
Sbjct: 121 EDKENDKEIGKENKKESGEEN 141

[Close]

BLAST of CmoCh12G011530 vs. NCBI nr
Match: gi|255561871|ref|XP_002521944.1| (PREDICTED: uncharacterized protein At2g34160 [Ricinus communis])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 99/116 (85.34%), Postives = 100/116 (86.21%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           A   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL
Sbjct: 38  AQTQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 97

Query: 70  ATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAEAAAGGRE 121
           ATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSLM AA  A EA    +E
Sbjct: 98  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMEAANTATEAETQDKE 153

[Close]

BLAST of CmoCh12G011530 vs. NCBI nr
Match: gi|1021565989|ref|XP_016174303.1| (PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 97/118 (82.20%), Postives = 102/118 (86.44%), Query Frame = 1


Query: 11  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLA 70
           TET KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLA
Sbjct: 18  TETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLA 77

Query: 71  TEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMTAATVAAEAAAGGREEKK 124
           TEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFD+LM AA  +      G ++KK
Sbjct: 78  TEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMVAANTSESHQPAGNDDKK 135

The following BLAST results are available for this feature:

BLAST of CmoCh12G011530 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2416_ARATH	1.5e-33	71.17	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1	[more]

BLAST of CmoCh12G011530 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG69_CUCSA	6.9e-46	83.33	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1	[more]
B9S7H5_RICCO	1.1e-40	85.34	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1	[more]
A0A078DFW3_BRANA	1.5e-40	77.69	BnaA06g29200D protein OS=Brassica napus GN=BnaA06g29200D PE=4 SV=1	[more]
M4D0K5_BRARP	1.5e-40	77.69	Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1	[more]
A0A067JVY8_JATCU	1.9e-40	81.45	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1	[more]

BLAST of CmoCh12G011530 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04620.1	1.5e-39	72.59	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	7.6e-36	72.07	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	8.4e-35	71.17	Alba DNA/RNA-binding protein	[more]

BLAST of CmoCh12G011530 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443233\|ref\|XP_004139384.1\|	9.9e-46	83.33	PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus]	[more]
gi\|659070696\|ref\|XP_008456222.1\|	3.8e-45	83.10	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo]	[more]
gi\|1009117586\|ref\|XP_015875397.1\|	5.4e-44	77.30	PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba]	[more]
gi\|255561871\|ref\|XP_002521944.1\|	1.6e-40	85.34	PREDICTED: uncharacterized protein At2g34160 [Ricinus communis]	[more]
gi\|1021565989\|ref\|XP_016174303.1\|	1.6e-40	82.20	PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002775	DNA/RNA-bd_Alba-like
IPR014560	UCP030333_Alba

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0048235	pollen sperm cell differentiation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh12G011530.1	CmoCh12G011530.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	GENE3D	G3DSA:3.30.110.20		coord: 15..116 score: 1.6
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 17..79 score: 1.9
IPR002775	DNA/RNA-binding protein Alba-like	unknown	SSF82704	AlbA-like	coord: 16..106 score: 4.45
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIR	PIRSF030333	UCP030333_Alba	coord: 1..131 score: 5.0
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 9..123 score: 5.8
None	No IPR available	PANTHER	PTHR31947:SF5	SUBFAMILY NOT NAMED	coord: 9..123 score: 5.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh12G011530	Cucsa.133090	Cucumber (Gy14) v1	cgycmoB0359
CmoCh12G011530	CmaCh12G011330	Cucurbita maxima (Rimu)	cmacmoB177
CmoCh12G011530	CmaCh05G012170	Cucurbita maxima (Rimu)	cmacmoB763
CmoCh12G011530	Cla019790	Watermelon (97103) v1	cmowmB156
CmoCh12G011530	Csa2G010240	Cucumber (Chinese Long) v2	cmocuB157
CmoCh12G011530	MELO3C004397	Melon (DHL92) v3.5.1	cmomeB161
CmoCh12G011530	ClCG02G016810	Watermelon (Charleston Gray)	cmowcgB144
CmoCh12G011530	CSPI02G02790	Wild cucumber (PI 183967)	cmocpiB159
CmoCh12G011530	Lsi11G004260	Bottle gourd (USVL1VR-Ls)	cmolsiB148
CmoCh12G011530	Cp4.1LG00g04330	Cucurbita pepo (Zucchini)	cmocpeB141
CmoCh12G011530	Cp4.1LG11g09900	Cucurbita pepo (Zucchini)	cmocpeB147
CmoCh12G011530	Cp4.1LG07g09860	Cucurbita pepo (Zucchini)	cmocpeB175
CmoCh12G011530	MELO3C004397.2	Melon (DHL92) v3.6.1	cmomedB177
CmoCh12G011530	Cla97C02G042600	Watermelon (97103) v2	cmowmbB161
CmoCh12G011530	CsGy2G002900	Cucumber (Gy14) v2	cgybcmoB170
CmoCh12G011530	Carg17605	Silver-seed gourd	carcmoB0973
CmoCh12G011530	Carg22995	Silver-seed gourd	carcmoB1441

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh12G011530	Cucumber (Chinese Long) v3	cmocucB0185
CmoCh12G011530	Wax gourd	cmowgoB0171
CmoCh12G011530	Cucurbita moschata (Rifu)	cmocmoB086
CmoCh12G011530	Cucurbita moschata (Rifu)	cmocmoB148
CmoCh12G011530	Bottle gourd (USVL1VR-Ls)	cmolsiB142