Cp4.1LG07g09860 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG07g09860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionAlba DNA/RNA-binding protein
LocationCp4.1LG07 : 8741706 .. 8743675 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCCGCTCCTCAGAATTTTCCCGAGAAAATTTCGAGAGAGAAAATCTGTTCTTGTTCTTGTTGCTTTGATTTGAGAGAAAGAGGAATATAGAGGGAAAAGAGATAGAAGATATGACGACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGGTATTCATGAATCGTTCTCTCGTTCATTTTGATTTGGTTACGTTGAGCGAGGATTTGGGATTTACTCGGTTTTTGTTTGGTTCTCGAGAAATGGAATCGAAATGTGTAATGTAAAAATGGACGGTGATTTGAATCTTTGAATGATTTGCTTTATGATTTGAATGATTTCATTCGGATAATCGTTTGATTTTAGTTTCTTGGTTGTTTACTTGTTTTATTGGAAATTTGAATCGTCTTGCTCTCAGTTTGCCCTGAGATCCCGTTTCGTTTTTTATGAAATCGAGATTCGAGATTAAGATTTGAGCAAGAATTTGAAATTCATTACGTTTTTGTTTGATTCTCGAGAAATGGAATTAAAATGTGTGATGTAAGAAAGAACGGTGAATGGTGAATCAGTGTGATTGTTTTGATTTGCTTTTATGATTCGAACGATTTCATTTGCATAATCGTCTGATTTTAGTTTCTTGGTTGTTTAGTTGTTTTATTAGAAATTTGACCCCTAAGATCCCTTTCGTTATCGAGATTACGATTTTAGCAAGAATTTGAAATTCATTATGTTTTTGTTTGATTCTCGAGAAATGGAATCGAAATGAGTAATGTAAGAACAAACAGTGAATCAGTACGATTCTTTTGATTTGCTTTATGATTCGAACAATTTCATTCGGATAATCGTTTGATTTTAGTTTCTTGGTTTAAAAATCGAGATTCGAGATTACGATTCTTTACATCAATGTGTTTAATTCTTGATTCAGAGGTACATTCAACAGCACAATGAGGTTGAGCTATCTGCATTGGGAATGGGTACGGTTTTAGTTCTTGAAAATCTTTTAATTTTTCCGCTATCTGTACATGAATTTTTTGATTTTCTTATCGCAAATTCTCTGCATCATTACAGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAGTAATTCTGTTATCATATTCGTTCATTCACGTAATTTCTTGATAAAATAGATATCACTGATAATTTGTATGGTTTTGTTGTGAAATAGAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTCGTTCTTTTTTCTTAGTTATTGATGAGCTTTTCGTGTTTTGTGTTGGATGATGAAAGTCCCATATCGGCTAATTTAGGGAATGATCATGAGTTTATAATCAAATAATACTATCTCCATCAGTACGAGGCCTCTTGGGGAGTGGACAATATCATACCATTGTGAAGAGTCGTGTTCATCTAACATTTTGAAACTTTTTAGCTATGAACGGTTTTTGTGGGACTGAGTTTTGAAACGTTTCTTGTTTTGGGTCGATTTTGATAGATTGAGATTGTTCTCGGAAAGTCGGAGAAATTTGATTCTCTGATGATGACTGCGGCCACGGTGGCGACGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAGAGAAGATGAGAGGGAGAGGAGAGGGGAAGTGGATGTTACAATTCTTGTAGTTTAAGAATCACAATTCTTGTAGTTTTTGTTACTTTCATGTTCATCTAATCACAATTCTTTTGAAACTTTCCTTCTTCGAGCTCGTGTTTTATCGTTCAAGTTACGATGCTACTGTGTTTTTTACAATTTTCACGATGAACGATGAACGAAGTCACGTGAATATAATTATAATGGCCCAAGTCTACTGCT

mRNA sequence

TCCCGCTCCTCAGAATTTTCCCGAGAAAATTTCGAGAGAGAAAATCTGTTCTTGTTCTTGTTGCTTTGATTTGAGAGAAAGAGGAATATAGAGGGAAAAGAGATAGAAGATATGACGACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAGCTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGATTGAGATTGTTCTCGGAAAGTCGGAGAAATTTGATTCTCTGATGATGACTGCGGCCACGGTGGCGACGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAGAGAAGATGAGAGGGAGAGGAGAGGGGAAGTGGATGTTACAATTCTTGTAGTTTAAGAATCACAATTCTTGTAGTTTTTGTTACTTTCATGTTCATCTAATCACAATTCTTTTGAAACTTTCCTTCTTCGAGCTCGTGTTTTATCGTTCAAGTTACGATGCTACTGTGTTTTTTACAATTTTCACGATGAACGATGAACGAAGTCACGTGAATATAATTATAATGGCCCAAGTCTACTGCT

Coding sequence (CDS)

ATGACGACGACGATTGCGGTATCGGGAGCTACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCACAATGAGGTTGAGCTATCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGATTGGCTACCGAGAAGAAAGTTTTGACTTCTACGGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGATTGAGATTGTTCTCGGAAAGTCGGAGAAATTTGATTCTCTGATGATGACTGCGGCCACGGTGGCGACGGAGGCGGCAGCGGGAGGCGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAGTAG

Protein sequence

MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLMMTAATVATEAAAGGGEEKKKAGEESKEGQ
Homology
[Close]
BLAST of Cp4.1LG07g09860 vs. Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.7e-33
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMMTAATVATEAAA 118
           A EKK++TSTV +KD+ +GR      IEI L KSEKFD LM  A     +A A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEA 126

[Close]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match: A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 7.0e-46
Identity = 121/145 (83.45%), Postives = 122/145 (84.14%), Query Frame = 1 

Query: 1   MTTTIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSL MTAAT  
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL-MTAATAV 120

Query: 121 TE---AAAGGGEEKKKAGEESKEGQ 135
            E   A A   EE+KKA EESKE Q
Sbjct: 121 PETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match: A0A078DFW3_BRANA (BnaA06g29200D protein OS=Brassica napus GN=BnaA06g29200D PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-41
Identity = 99/119 (83.19%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 6   AVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLM--MTAATVATEAAAGGGEE 123
           NNGLATEKKVLTSTVGMKDENKGR+IEIVLGKS+KFDSLM  +T  TV  E A    EE
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVIEIVLGKSDKFDSLMTPVTKDTVKEEKAVNTEEE 142

[Close]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match: M4D0K5_BRARP (Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-41
Identity = 99/119 (83.19%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 6   AVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLM--MTAATVATEAAAGGGEE 123
           NNGLATEKKVLTSTVGMKDENKGR+IEIVLGKS+KFDSLM  +T  TV  E A    EE
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVIEIVLGKSDKFDSLMTPVTKDTVKEEKAVNTEEE 142

[Close]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match: B9S7H5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.6e-40
Identity = 99/113 (87.61%), Postives = 100/113 (88.50%), Query Frame = 1 

Query: 8   SGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 67
           + A   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN
Sbjct: 36  NAAQTQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 95

Query: 68  GLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVATEA 116
           GLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSL M AA  ATEA
Sbjct: 96  GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL-MEAANTATEA 147

[Close]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match: A0A0D2PFR6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G278700 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 5.7e-40
Identity = 96/111 (86.49%), Postives = 99/111 (89.19%), Query Frame = 1 

Query: 9   GATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNG 68
           G  E QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNG
Sbjct: 22  GGVEAQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNG 81

Query: 69  LATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVATE 115
           LA EKKVLTSTVGMKDENKGR+     IEIVLGKSEKFD L+M A+ VATE
Sbjct: 82  LAIEKKVLTSTVGMKDENKGRVVLKAKIEIVLGKSEKFD-LLMNASNVATE 131

[Close]
BLAST of Cp4.1LG07g09860 vs. TAIR10
Match: AT3G04620.1 (AT3G04620.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 161.4 bits (407), Expect = 3.9e-40
Identity = 95/133 (71.43%), Postives = 104/133 (78.20%), Query Frame = 1 

Query: 4   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63
           T   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EI
Sbjct: 25  TTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEI 84

Query: 64  LKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLM--MTAATVATEAA 123
           LKNNGLATEKKVLTSTVGMKDE KG++     IEIVLGKS+KFDSL+  +T      E A
Sbjct: 85  LKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEEA 144

Query: 124 AGGGEEKKKAGEE 130
           +   E   +A EE
Sbjct: 145 SAETEASVEAQEE 157

[Close]
BLAST of Cp4.1LG07g09860 vs. TAIR10
Match: AT1G29250.1 (AT1G29250.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 142.9 bits (359), Expect = 1.4e-34
Identity = 80/112 (71.43%), Postives = 91/112 (81.25%), Query Frame = 1 

Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct: 14  AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMMTAATVATEAA 117
           A EKK++TSTV +KD+++GR      IEI L KSEKFD L M AA    EAA
Sbjct: 74  AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDEL-MAAANEEKEAA 124

[Close]
BLAST of Cp4.1LG07g09860 vs. TAIR10
Match: AT2G34160.1 (AT2G34160.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 141.7 bits (356), Expect = 3.2e-34
Identity = 78/113 (69.03%), Postives = 90/113 (79.65%), Query Frame = 1 

Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGR-----LIEIVLGKSEKFDSLMMTAATVATEAAA 118
           A EKK++TSTV +KD+ +GR      IEI L KSEKFD LM  A     +A A
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKEDAEA 126

[Close]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match: gi|449443233|ref|XP_004139384.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 121/145 (83.45%), Postives = 122/145 (84.14%), Query Frame = 1 

Query: 1   MTTTIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSL MTAAT  
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL-MTAATAV 120

Query: 121 TE---AAAGGGEEKKKAGEESKEGQ 135
            E   A A   EE+KKA EESKE Q
Sbjct: 121 PETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match: gi|659070696|ref|XP_008456222.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-45
Identity = 120/142 (84.51%), Postives = 122/142 (85.92%), Query Frame = 1 

Query: 4   TIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVATE- 123
           AEILKNNGLATEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFDSL MTAAT   E 
Sbjct: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL-MTAATAVPET 122

Query: 124 --AAAGGGEEKKKAGEESKEGQ 135
             A A  GEE+KKA EE+KE Q
Sbjct: 123 VVAVAAAGEEEKKA-EENKEEQ 142

[Close]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match: gi|1009117586|ref|XP_015875397.1| (PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba])

HSP 1 Score: 177.9 bits (450), Expect = 1.1e-41
Identity = 106/137 (77.37%), Postives = 112/137 (81.75%), Query Frame = 1 

Query: 1   MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60
           M T +  S A ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 1   MATMVVSSQAIETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60

Query: 61  AEILKNNGLATEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVATEA 120
           AEILKNNGLATEKKV TSTVGMKDENKGRL     IEIVLGKSEKFDSLM   A VA+  
Sbjct: 61  AEILKNNGLATEKKVSTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM--TAAVASAT 120

Query: 121 AAGGGEEKKKAGEESKE 133
           A    E  K+ G+E+K+
Sbjct: 121 ATEDKENDKEIGKENKK 135

[Close]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match: gi|674947050|emb|CDX86203.1| (BnaA06g29200D [Brassica napus])

HSP 1 Score: 176.8 bits (447), Expect = 2.5e-41
Identity = 99/119 (83.19%), Postives = 104/119 (87.39%), Query Frame = 1 

Query: 6   AVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLIEIVLGKSEKFDSLM--MTAATVATEAAAGGGEE 123
           NNGLATEKKVLTSTVGMKDENKGR+IEIVLGKS+KFDSLM  +T  TV  E A    EE
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVIEIVLGKSDKFDSLMTPVTKDTVKEEKAVNTEEE 142

[Close]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match: gi|1021565989|ref|XP_016174303.1| (PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis])

HSP 1 Score: 174.1 bits (440), Expect = 1.6e-40
Identity = 97/118 (82.20%), Postives = 103/118 (87.29%), Query Frame = 1 

Query: 11  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLA 70
           TET KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLA
Sbjct: 18  TETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLA 77

Query: 71  TEKKVLTSTVGMKDENKGRL-----IEIVLGKSEKFDSLMMTAATVATEAAAGGGEEK 124
           TEKKVLTSTVGMKDENKGRL     IEIVLGKSEKFD+LM+ A T  +   AG  ++K
Sbjct: 78  TEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMVAANTSESHQPAGNDDKK 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG07g09860 vs. Swiss-Prot
Match NameE-valueIdentityDescription
Y2416_ARATH5.7e-3369.03Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1[more]
BLAST of Cp4.1LG07g09860 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG69_CUCSA7.0e-4683.45Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1[more]
A0A078DFW3_BRANA1.8e-4183.19BnaA06g29200D protein OS=Brassica napus GN=BnaA06g29200D PE=4 SV=1[more]
M4D0K5_BRARP1.8e-4183.19Uncharacterized protein OS=Brassica rapa subsp. pekinensis PE=4 SV=1[more]
B9S7H5_RICCO2.6e-4087.61Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1[more]
A0A0D2PFR6_GOSRA5.7e-4086.49Uncharacterized protein OS=Gossypium raimondii GN=B456_007G278700 PE=4 SV=1[more]
BLAST of Cp4.1LG07g09860 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G04620.13.9e-4071.43 Alba DNA/RNA-binding protein[more]
AT1G29250.11.4e-3471.43 Alba DNA/RNA-binding protein[more]
AT2G34160.13.2e-3469.03 Alba DNA/RNA-binding protein[more]
BLAST of Cp4.1LG07g09860 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449443233|ref|XP_004139384.1|1.0e-4583.45PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus][more]
gi|659070696|ref|XP_008456222.1|1.0e-4584.51PREDICTED: uncharacterized protein At2g34160 [Cucumis melo][more]
gi|1009117586|ref|XP_015875397.1|1.1e-4177.37PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba][more]
gi|674947050|emb|CDX86203.1|2.5e-4183.19BnaA06g29200D [Brassica napus][more]
gi|1021565989|ref|XP_016174303.1|1.6e-4082.20PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: INTERPRO
TermDefinition
IPR014560UCP030333_Alba
IPR002775DNA/RNA-bd_Alba-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0006302 double-strand break repair
biological_process GO:0010332 response to gamma radiation
biological_process GO:0048235 pollen sperm cell differentiation
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG07g09860.1Cp4.1LG07g09860.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002775DNA/RNA-binding protein Alba-likeGENE3DG3DSA:3.30.110.20coord: 15..115
score: 5.5
IPR002775DNA/RNA-binding protein Alba-likePFAMPF01918Albacoord: 17..79
score: 1.9
IPR002775DNA/RNA-binding protein Alba-likeunknownSSF82704AlbA-likecoord: 16..105
score: 6.54
IPR014560Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-relatedPIRPIRSF030333UCP030333_Albacoord: 1..132
score: 3.8
NoneNo IPR availablePANTHERPTHR31947FAMILY NOT NAMEDcoord: 10..123
score: 2.4
NoneNo IPR availablePANTHERPTHR31947:SF5SUBFAMILY NOT NAMEDcoord: 10..123
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG07g09860Cucsa.133090Cucumber (Gy14) v1cgycpeB0356
Cp4.1LG07g09860CmaCh12G011330Cucurbita maxima (Rimu)cmacpeB203
Cp4.1LG07g09860CmaCh05G012170Cucurbita maxima (Rimu)cmacpeB789
Cp4.1LG07g09860CmoCh12G011530Cucurbita moschata (Rifu)cmocpeB175
Cp4.1LG07g09860CmoCh05G013190Cucurbita moschata (Rifu)cmocpeB745
Cp4.1LG07g09860Cla019790Watermelon (97103) v1cpewmB806
Cp4.1LG07g09860Csa2G010240Cucumber (Chinese Long) v2cpecuB820
Cp4.1LG07g09860MELO3C004516Melon (DHL92) v3.5.1cpemeB772
Cp4.1LG07g09860MELO3C004397Melon (DHL92) v3.5.1cpemeB771
Cp4.1LG07g09860ClCG11G002950Watermelon (Charleston Gray)cpewcgB724
Cp4.1LG07g09860ClCG02G016810Watermelon (Charleston Gray)cpewcgB733
Cp4.1LG07g09860CSPI02G02790Wild cucumber (PI 183967)cpecpiB821
Cp4.1LG07g09860CSPI02G01620Wild cucumber (PI 183967)cpecpiB822
Cp4.1LG07g09860Lsi11G004260Bottle gourd (USVL1VR-Ls)cpelsiB659
Cp4.1LG07g09860Lsi11G003060Bottle gourd (USVL1VR-Ls)cpelsiB660
Cp4.1LG07g09860MELO3C004516.2Melon (DHL92) v3.6.1cpemedB908
Cp4.1LG07g09860MELO3C004397.2Melon (DHL92) v3.6.1cpemedB907
Cp4.1LG07g09860CsaV3_2G002770Cucumber (Chinese Long) v3cpecucB1015
Cp4.1LG07g09860Bhi02G000861Wax gourdcpewgoB1068
Cp4.1LG07g09860Bhi06G001678Wax gourdcpewgoB1023
Cp4.1LG07g09860CsGy2G002900Cucumber (Gy14) v2cgybcpeB271
Cp4.1LG07g09860Carg10897Silver-seed gourdcarcpeB0817
Cp4.1LG07g09860Carg17605Silver-seed gourdcarcpeB1006
Cp4.1LG07g09860Carg22995Silver-seed gourdcarcpeB1496
Cp4.1LG07g09860Carg12156Silver-seed gourdcarcpeB0055
Cp4.1LG07g09860Carg09907Silver-seed gourdcarcpeB0190
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG07g09860Cp4.1LG00g04330Cucurbita pepo (Zucchini)cpecpeB015
Cp4.1LG07g09860Cp4.1LG11g09900Cucurbita pepo (Zucchini)cpecpeB139
Cp4.1LG07g09860Cp4.1LG11g10880Cucurbita pepo (Zucchini)cpecpeB140
Cp4.1LG07g09860Cp4.1LG18g04880Cucurbita pepo (Zucchini)cpecpeB373
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG07g09860Cucumber (Chinese Long) v3cpecucB1014
Cp4.1LG07g09860Wax gourdcpewgoB1006
Cp4.1LG07g09860Cucurbita pepo (Zucchini)cpecpeB504
Cp4.1LG07g09860Cucurbita maxima (Rimu)cmacpeB164
Cp4.1LG07g09860Cucurbita moschata (Rifu)cmocpeB742