Carg22995 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg22995
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Alba DNA/RNA-binding protein
Location	Cucurbita_argyrosperma_scaffold_127 : 73859 .. 75906 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCGAGAAAAGAAAATCCTCTCTGTTTCTTTGATCTGTGTGAGAGTGAGAGAGTTCGAAGTGTGAAGAACAACAGAAGCAATGGCGACGATGGCAGTTTCGGGAGCCACAGCCGCAGCCACCCCCACACCCGCGGCCGCCGCCACTGAAACACAGAAGAAGAACAGAATCCAGGTTTCCAACACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGGTATATATATACTAATCCTTCTTCTTTCGTTTGATTTTAATCACTGAGAATTTCGATTTTGTTCTGTTCTTGTTTCGTTCTCAAGAAATGAAATCGAAAATATATAATGTAATAACGATCCATCAATCTGTGTTCTTCTTTTTGTGATCTGAACAAATTTACTGTTGAAGATCTTTGGAAGGGAGTCTGACTAATTTAGGGAATAATCGTGGGTTTAGTTTATAAGTAAGGAATACATTTTCATTGGTACGAGGCTTTTTGGGAAATTAAAAGTCACGAGAATTCATGTTCAAAGTGGACAATACCATACTACTGTAGAGATCCGTGATTCCTACCATGATATAAGAGCCATGTCAAAGTGGACAATATCATACTATTGTGGAGAGTTGTGATTTTTAATAGGCTATAAGAGTCATGTCAAAGTAGACAATTTCATACCATTGTGGAGAGTTATGATTTTTAACATAGTATTAAAGTCATGCCCTTAACTTAGTTATATTAATAGAATTCTCAAGCGTTGTATAATGAAGTTGTGAGCCTTGAAAATGTAGTCAAAAGTGACTCAAACGTTGAACAAATGGTGTACTTTGTTTGAGGACTCCAGAAAAGGAGTTGAGCCTTGATTAATAGGAGGCTGTTCAAGGGCTCCATAGGTCTCGAGGGAGACTCTGTAGTGTACTTTGTTTGAGGTGAGGATTGTTGAGAGGGCTTAAGCTTCATACGAGGCCTTTTGGATAAACCAAAAATAAAGTCATGAGAACTTATGTTCAAAGTGGATCATATCATACTATTGTGGAGAGCCATGATTCCTTACATTTACTTCCATAATCCTCTGATTTTAGTTTATACGTTGTTTGGTTGTTTTCGATGACAACAAGTTTTTTACGTAATTGTTTTGATTCTTGATTCAGAGGTACATTCAACAACACAATGAGGTGGAGCTTTCCGCCTTGGGAATGGGTACTGTTTTAATTTTCCTCTGATCGATATACGTTGTTCTCGACGAATCATATCTGATGAACTTTTGGTTTTCTTGCATCGAATCCTTCGAAATTGTTACAGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGACTGGCTACAGAGAAGAGTAACTCTGTTTCTTCGTCTTTAATGCTAATTTCTGTTGGTAATATAAAATGGTGATGATTATTGATAATCGTATGGTTTTGCTATGAATAGAAGTTTTGACTTCCACCGTCGGCATGAAAGATGAAAACAAAGGCCGTTTGGTTCAGAAAGCCAAGGTTAGTTCATTTGTGAATTCTTATCAAATTTTATCGTTTTGACATCAAATTGCTCTGTTTTGTGATAGATTGAGATAGTTCTCGGAAAGTCAGAGAAATTTGATTCTCTGATGACTGCGGCTACGACAGTACCAGAGCCGGCGGTGGCGACGGCGACGGCGACAGCGATGGCGGCTCCTGTTGCTGCTGAAGAGAAAAAAGAAGAGGAAAGCAAGGAGGAGCAGTAGGGGGAGGAGGAGAGGTGAATTTGAATGTTACATTGTTGTAGTTTAAGAATCACATTGCAATGTTATAGGATAGGTTGTTTTCTTCTTTTTCTTGAACGGTCACGTTTATGAATGACATGTTTAGTGTCGTAATCCATTGTGTGATGAAGTGGATTGTGCTTCCGATCAGGTCATCTGCTCTTCTCATAGTATGGTTGTGACCATGTCATTACCCCAAAAAAATTTCAATTTTTTTCTCTCTCTACTGTGTTGAGACGTTGCATTTGGTTGGTACTTCTCTGTTGCATCTAATGAAGTAAATCTCTGATACTTCTTTT

mRNA sequence

TTCCGAGAAAAGAAAATCCTCTCTGTTTCTTTGATCTGTGTGAGAGTGAGAGAGTTCGAAGTGTGAAGAACAACAGAAGCAATGGCGACGATGGCAGTTTCGGGAGCCACAGCCGCAGCCACCCCCACACCCGCGGCCGCCGCCACTGAAACACAGAAGAAGAACAGAATCCAGGTTTCCAACACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACACAATGAGGTGGAGCTTTCCGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGACTGGCTACAGAGAAGAAAGTTTTGACTTCCACCGTCGGCATGAAAGATGAAAACAAAGGCCGTTTGGTTCAGAAAGCCAAGATTGAGATAGTTCTCGGAAAGTCAGAGAAATTTGATTCTCTGATGACTGCGGCTACGACAGTACCAGAGCCGGCGGTGGCGACGGCGACGGCGACAGCGATGGCGGCTCCTGTTGCTGCTGAAGAGAAAAAAGAAGAGGAAAGCAAGGAGGAGCAGTAGGGGGAGGAGGAGAGGTGAATTTGAATGTTACATTGTTGTAGTTTAAGAATCACATTGCAATGTTATAGGATAGGTTGTTTTCTTCTTTTTCTTGAACGGTCACGTTTATGAATGACATGTTTAGTGTCGTAATCCATTGTGTGATGAAGTGGATTGTGCTTCCGATCAGGTCATCTGCTCTTCTCATAGTATGGTTGTGACCATGTCATTACCCCAAAAAAATTTCAATTTTTTTCTCTCTCTACTGTGTTGAGACGTTGCATTTGGTTGGTACTTCTCTGTTGCATCTAATGAAGTAAATCTCTGATACTTCTTTT

Coding sequence (CDS)

ATGGCGACGATGGCAGTTTCGGGAGCCACAGCCGCAGCCACCCCCACACCCGCGGCCGCCGCCACTGAAACACAGAAGAAGAACAGAATCCAGGTTTCCAACACCAAGAAACCCCTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAACACAATGAGGTGGAGCTTTCCGCCTTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAGAACAATGGACTGGCTACAGAGAAGAAAGTTTTGACTTCCACCGTCGGCATGAAAGATGAAAACAAAGGCCGTTTGGTTCAGAAAGCCAAGATTGAGATAGTTCTCGGAAAGTCAGAGAAATTTGATTCTCTGATGACTGCGGCTACGACAGTACCAGAGCCGGCGGTGGCGACGGCGACGGCGACAGCGATGGCGGCTCCTGTTGCTGCTGAAGAGAAAAAAGAAGAGGAAAGCAAGGAGGAGCAGTAG

Protein sequence

MATMAVSGATAAATPTPAAAATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPEPAVATATATAMAAPVAAEEKKEEESKEEQ

Homology

[Close]

BLAST of Carg22995 vs. NCBI nr
Match: XP_022946134.1 (uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 1.1e-47
Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATTVPE 130
           MTAATTVPE
Sbjct: 121 MTAATTVPE 129

[Close]

BLAST of Carg22995 vs. NCBI nr
Match: XP_023545391.1 (uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.2 bits (500), Expect = 4.2e-47
Identity = 128/129 (99.22%), Postives = 128/129 (99.22%), Query Frame = 0


Query: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATTVPE 130
           MTAAT VPE
Sbjct: 121 MTAATAVPE 129

[Close]

BLAST of Carg22995 vs. NCBI nr
Match: XP_008456222.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 2.3e-45
Identity = 108/129 (83.72%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT                   IQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATTVPE 130
           MTAAT VPE
Sbjct: 121 MTAATAVPE 120

[Close]

BLAST of Carg22995 vs. NCBI nr
Match: XP_023521159.1 (uncharacterized protein At2g34160-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 189.1 bits (479), Expect = 1.1e-44
Identity = 124/124 (100.00%), Postives = 124/124 (100.00%), Query Frame = 0


Query: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAA 125
           MTAA
Sbjct: 121 MTAA 124

[Close]

BLAST of Carg22995 vs. NCBI nr
Match: XP_004139384.1 (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus] >KGN60788.1 hypothetical protein Csa_2G010240 [Cucumis sativus])

HSP 1 Score: 187.6 bits (475), Expect = 3.3e-44
Identity = 106/127 (83.46%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 2   ATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61
           AT+AVSGAT                   IQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 3   ATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62

Query: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 120

Query: 122 TAATTVP 129
           TAAT VP
Sbjct: 123 TAATAVP 120

[Close]

BLAST of Carg22995 vs. TAIR10
Match: AT3G04620.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 166.8 bits (421), Expect = 1.1e-41
Identity = 87/96 (90.62%), Postives = 92/96 (95.83%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILKNNGLATEKKVLTS
Sbjct: 40  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTS 99

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT 126
           TVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T
Sbjct: 100 TVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVT 135

[Close]

BLAST of Carg22995 vs. TAIR10
Match: AT1G29250.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-35
Identity = 76/100 (76.00%), Postives = 86/100 (86.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG A EKK++TS
Sbjct: 23  IQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIMTS 82

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           TV +KD+++GR VQKAKIEI L KSEKFD LM AA    E
Sbjct: 83  TVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKE 122

[Close]

BLAST of Carg22995 vs. TAIR10
Match: AT2G34160.1 (Alba DNA/RNA-binding protein)

HSP 1 Score: 145.2 bits (365), Expect = 3.4e-35
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TS
Sbjct: 23  IQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTS 82

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           TV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E
Sbjct: 83  TVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKE 122

[Close]

BLAST of Carg22995 vs. Swiss-Prot
Match: sp|O22969|Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.2e-34
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG A EKK++TS
Sbjct: 23  IQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTS 82

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           TV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E
Sbjct: 83  TVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKE 122

[Close]

BLAST of Carg22995 vs. TrEMBL
Match: tr|A0A1S3C2U1|A0A1S3C2U1_CUCME (uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.5e-45
Identity = 108/129 (83.72%), Postives = 109/129 (84.50%), Query Frame = 0


Query: 1   MATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60
           MAT+AVSGAT                   IQVSNTKKPLFFYVNLAKRYIQQHNEVELSA
Sbjct: 1   MATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSA 60

Query: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120
           LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL
Sbjct: 61  LGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL 120

Query: 121 MTAATTVPE 130
           MTAAT VPE
Sbjct: 121 MTAATAVPE 120

[Close]

BLAST of Carg22995 vs. TrEMBL
Match: tr|A0A0A0LG69|A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.2e-44
Identity = 106/127 (83.46%), Postives = 107/127 (84.25%), Query Frame = 0


Query: 2   ATMAVSGATXXXXXXXXXXXXXXXXXXXIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 61
           AT+AVSGAT                   IQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL
Sbjct: 3   ATIAVSGAT---------PATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSAL 62

Query: 62  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 121
           GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM
Sbjct: 63  GMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM 120

Query: 122 TAATTVP 129
           TAAT VP
Sbjct: 123 TAATAVP 120

[Close]

BLAST of Carg22995 vs. TrEMBL
Match: tr|A0A067JVY8|A0A067JVY8_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23517 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.9e-43
Identity = 98/100 (98.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS
Sbjct: 40  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 99

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA TVPE
Sbjct: 100 TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMDAANTVPE 139

[Close]

BLAST of Carg22995 vs. TrEMBL
Match: tr|A0A2I4DRH2|A0A2I4DRH2_9ROSI (uncharacterized protein At2g34160-like OS=Juglans regia OX=51240 GN=LOC108982742 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 9.2e-43
Identity = 94/100 (94.00%), Postives = 98/100 (98.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLAT+KKV TS
Sbjct: 18  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATQKKVCTS 77

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           T+GMKDENKGRL+QKAKIEIVLGKSEKFDSLMTAATT P+
Sbjct: 78  TIGMKDENKGRLIQKAKIEIVLGKSEKFDSLMTAATTTPD 117

[Close]

BLAST of Carg22995 vs. TrEMBL
Match: tr|A0A2C9VG22|A0A2C9VG22_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G136600 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 2.0e-42
Identity = 96/100 (96.00%), Postives = 97/100 (97.00%), Query Frame = 0


Query: 30  IQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 89
           IQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLATEKKVLTS
Sbjct: 38  IQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLATEKKVLTS 97

Query: 90  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATTVPE 130
           TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA T PE
Sbjct: 98  TVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMDAANTAPE 137

The following BLAST results are available for this feature:

BLAST of Carg22995 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946134.1	1.1e-47	100.00	uncharacterized protein At2g34160-like isoform X1 [Cucurbita moschata]	[more]
XP_023545391.1	4.2e-47	99.22	uncharacterized protein At2g34160-like [Cucurbita pepo subsp. pepo]	[more]
XP_008456222.1	2.3e-45	83.72	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo]	[more]
XP_023521159.1	1.1e-44	100.00	uncharacterized protein At2g34160-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_004139384.1	3.3e-44	83.46	PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus] >KGN60788.1 hypot...	[more]

BLAST of Carg22995 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04620.1	1.1e-41	90.63	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.2e-35	76.00	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	3.4e-35	76.00	Alba DNA/RNA-binding protein	[more]

BLAST of Carg22995 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O22969\|Y2416_ARATH	6.2e-34	76.00	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana OX=3702 GN=At2g34160 P...	[more]

BLAST of Carg22995 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C2U1\|A0A1S3C2U1_CUCME	1.5e-45	83.72	uncharacterized protein At2g34160 OS=Cucumis melo OX=3656 GN=LOC103496224 PE=4 S...	[more]
tr\|A0A0A0LG69\|A0A0A0LG69_CUCSA	2.2e-44	83.46	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010240 PE=4 SV=1	[more]
tr\|A0A067JVY8\|A0A067JVY8_JATCU	1.9e-43	98.00	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_23517 PE=4 SV=1	[more]
tr\|A0A2I4DRH2\|A0A2I4DRH2_9ROSI	9.2e-43	94.00	uncharacterized protein At2g34160-like OS=Juglans regia OX=51240 GN=LOC108982742...	[more]
tr\|A0A2C9VG22\|A0A2C9VG22_MANES	2.0e-42	96.00	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_08G136600 PE=4 SV=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR014560	UCP030333_Alba
IPR036882	Alba-like_dom_sf
IPR002775	DNA/RNA-bd_Alba-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg22995-RA	Carg22995-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 28..90 e-value: 2.5E-13 score: 49.6
IPR036882	Alba-like domain superfamily	GENE3D	G3DSA:3.30.110.20		coord: 26..134 e-value: 1.9E-47 score: 161.9
IPR036882	Alba-like domain superfamily	SUPERFAMILY	SSF82704	AlbA-like	coord: 27..122
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIRSF	PIRSF030333	UCP030333_Alba	coord: 1..153 e-value: 3.3E-63 score: 210.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..158
None	No IPR available	PANTHER	PTHR31947:SF5	SUBFAMILY NOT NAMED	coord: 8..134
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 8..134

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg22995	Cla019790	Watermelon (97103) v1	carwmB1071
Carg22995	Csa2G010240	Cucumber (Chinese Long) v2	carcuB1087
Carg22995	MELO3C004397	Melon (DHL92) v3.5.1	carmeB1042
Carg22995	ClCG02G016810	Watermelon (Charleston Gray)	carwcgB1042
Carg22995	CSPI02G02790	Wild cucumber (PI 183967)	carcpiB1109
Carg22995	Cucsa.133090	Cucumber (Gy14) v1	carcgyB1188
Carg22995	CmaCh05G012170	Cucurbita maxima (Rimu)	carcmaB1484
Carg22995	CmaCh12G011330	Cucurbita maxima (Rimu)	carcmaB1483
Carg22995	CmoCh12G011530	Cucurbita moschata (Rifu)	carcmoB1441
Carg22995	Lsi11G004260	Bottle gourd (USVL1VR-Ls)	carlsiB978
Carg22995	Cp4.1LG00g04330	Cucurbita pepo (Zucchini)	carcpeB1493
Carg22995	Cp4.1LG11g09900	Cucurbita pepo (Zucchini)	carcpeB1494
Carg22995	Cp4.1LG07g09860	Cucurbita pepo (Zucchini)	carcpeB1496
Carg22995	CsGy2G002900	Cucumber (Gy14) v2	carcgybB1053
Carg22995	MELO3C004397.2	Melon (DHL92) v3.6.1	carmedB1056
Carg22995	Cla97C02G042600	Watermelon (97103) v2	carwmbB1129

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg22995	Carg17605	Silver-seed gourd	carcarB588

The following block(s) are covering this gene:


Gene	Organism	Block
Carg22995	Silver-seed gourd	carcarB614
Carg22995	Cucurbita moschata (Rifu)	carcmoB1442
Carg22995	Cucumber (Chinese Long) v3	carcucB1120
Carg22995	Wax gourd	carwgoB1260