CmaCh12G011330 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh12G011330
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Alba DNA/RNA-binding protein
Location	Cma_Chr12 : 8927626 .. 8929070 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGAAAAACTGCAAGAGAGAATCTGTTGTTCTTGTTGCTTTGATCTGAGAGATCGAGGAATATATAGTGAAAAGAGATCGAAGATCGAAGATATGACGACGACGATTGCGGTATCAGGAGCCACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGGTATTCACAAATTGTTCTCTTGTTCTTCCATTCTTTTCGATTTGAAATTTGTTCCGTTTTTGTTTCGTTCTTGAGAAATGGAATCGAAATGTGTAAGGTAAGAACGAACCGTCAATTGATCCGATTCTTTTGATTTTGCATACAATCGTCTAATTTTAGTTTCTTCTTTGTTTAATTGTTTTATTGGAAATTTGAATCTTGCTCTCAAAGTTTGCCTTAAGATCTCCTTTCGTTTTTGATGAAATTGAGATTTGAGATTACGATTTGAGCAAGAATTTGAAACGATTTCATTCGGATAATCGTTTGATTTTAGTTTCTTGATTGTTGAGATGTTTTATCGGAAATTTGAATCGTTTGCCCTAAGATCCCCTTTCGTTGATTTTTTTCGATGAAATCGAGATTGAAGATTACGACTTTTTACATCAATGTGTTTAATTCTTGATTTAGAGGTACATTCAACAGCATAATGAGGTTGAGCTTTCTGCATTGGGAATGGGTATTGTTTCAATTCTTGAAAATCTTTTAATTTTTCCGCTATTGGTACATGTGTTTTTTGATTTTCTTATCTCAAATTCTCTGTATCATTACAGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAAAACAATGGATTGGCTACAGAGAAGAGTAATTCTGTTAACATATTCGTTAATTCAAGTAATTTCTTGATAAAATGGTTATCACCGATGATTTGTATGGTTTTGTTGTGAAACAGAAGTTTTGACTTCTACCGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGGTTCGTATGATTTTGATACGATGTATTTTCATTTTTAGCCAGGAATGCTCAGATTAATCTTGTGGGATAACTTTCATTACATGAATTTGTTGGCATGTTTAAGTTTTTCATCGTTGGATATGAATTGTTCTTTTAGTTTTGAAACTTTTCGTGTTTTGGGTCGATTTTGATAGATTGTTTGATTATGAACTTCAAGTTTATATGATATGTTAAGTTACTGGTAATTCATTCGAACTTTGATTATGATCCTAGATTGAAATTGGGATTGAGTTTTGAAACGTTTCTTGTTTTGGGTCGATTTTGATAGATTGAGATCGTTCTGGGAAAGTCGGAAAAATTTGATTCTCTGATGACAGCGGCCACGGTGGCGGCGGAGGCGACAGCGGGGGGTGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAATAG

mRNA sequence

GAGAAAAACTGCAAGAGAGAATCTGTTGTTCTTGTTGCTTTGATCTGAGAGATCGAGGAATATATAGTGAAAAGAGATCGAAGATCGAAGATATGACGACGACGATTGCGGTATCAGGAGCCACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCATAATGAGGTTGAGCTTTCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAAAACAATGGATTGGCTACAGAGAAGAAAGTTTTGACTTCTACCGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATCGTTCTGGGAAAGTCGGAAAAATTTGATTCTCTGATGACAGCGGCCACGGTGGCGGCGGAGGCGACAGCGGGGGGTGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAATAG

Coding sequence (CDS)

ATGACGACGACGATTGCGGTATCAGGAGCCACTGAAACACAGAAGAAGAATAGAATTCAGGTTTCGAATACCAAGAAACCACTCTTCTTCTACGTTAATCTTGCTAAGAGGTACATTCAACAGCATAATGAGGTTGAGCTTTCTGCATTGGGAATGGCAATCACTACCGTTGTCACAATTGCAGAGATTCTAAAAAACAATGGATTGGCTACAGAGAAGAAAGTTTTGACTTCTACCGTCGGCATGAAGGATGAGAACAAAGGTCGTTTGGTTCAGAAAGCTAAGATTGAGATCGTTCTGGGAAAGTCGGAAAAATTTGATTCTCTGATGACAGCGGCCACGGTGGCGGCGGAGGCGACAGCGGGGGGTGGCGAGGAGAAAAAAAAGGCAGGAGAGGAAAGCAAGGAGGGGCAATAG

Protein sequence

MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEATAGGGEEKKKAGEESKEGQ

Homology

[Close]

BLAST of CmaCh12G011330 vs. Swiss-Prot
Match: Y2416_ARATH (Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 1.3e-37
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAE 119
           A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKE 122

[Close]

BLAST of CmaCh12G011330 vs. TrEMBL
Match: A0A0A0LG69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.5e-51
Identity = 126/144 (87.50%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 1   MTTTIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT   
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 E---ATAGGGEEKKKAGEESKEGQ 139
           E   A A   EE+KKA EESKE Q
Sbjct: 121 ETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]

BLAST of CmaCh12G011330 vs. TrEMBL
Match: B9S7H5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 2.7e-45
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 8   SGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 67
           + A   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN
Sbjct: 36  NAAQTQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 95

Query: 68  GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEA 120
           GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA  A EA
Sbjct: 96  GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMEAANTATEA 147

[Close]

BLAST of CmaCh12G011330 vs. TrEMBL
Match: A0A067JVY8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 7.9e-45
Identity = 105/120 (87.50%), Postives = 106/120 (88.33%), Query Frame = 1


Query: 2   TTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 61
           T T  V+ A    KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA
Sbjct: 23  TATEMVTTAQGQHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 82

Query: 62  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEATA 121
           EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA    EA A
Sbjct: 83  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMDAANTVPEADA 142

[Close]

BLAST of CmaCh12G011330 vs. TrEMBL
Match: W9RI44_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_024556 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 6.7e-44
Identity = 100/117 (85.47%), Postives = 106/117 (90.60%), Query Frame = 1


Query: 2   TTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIA 61
           T  +  + +   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+
Sbjct: 3   TVAVPQAQSIHAQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIS 62

Query: 62  EILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAE 119
           EILKNNGLATEKKV TSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSL+ A+TVA E
Sbjct: 63  EILKNNGLATEKKVSTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLVAASTVAPE 119

[Close]

BLAST of CmaCh12G011330 vs. TrEMBL
Match: A0A0D3DCA9_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 8.8e-44
Identity = 107/135 (79.26%), Postives = 112/135 (82.96%), Query Frame = 1


Query: 6   AVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILK 65
           A + A ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EILK
Sbjct: 24  ATTTAVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEILK 83

Query: 66  NNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT--VAAEATAGG 125
           NNGLATEKKVLTSTVGMKDENKGR+VQKAKIEIVLGKS+KFDSLMT  T     E  A  
Sbjct: 84  NNGLATEKKVLTSTVGMKDENKGRVVQKAKIEIVLGKSDKFDSLMTPVTKDTVKEEKAVN 143

Query: 126 GEEKKKAGEESKEGQ 139
            EEK    E   EG+
Sbjct: 144 TEEKPIEAEAKPEGK 158

[Close]

BLAST of CmaCh12G011330 vs. TAIR10
Match: AT3G04620.1 (AT3G04620.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-43
Identity = 97/133 (72.93%), Postives = 106/133 (79.70%), Query Frame = 1


Query: 4   TIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEI 63
           T   +   ET KKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI+EI
Sbjct: 25  TTTTTATVETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTISEI 84

Query: 64  LKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEATAGG 123
           LKNNGLATEKKVLTSTVGMKDE KG++VQKAKIEIVLGKS+KFDSL+   T         
Sbjct: 85  LKNNGLATEKKVLTSTVGMKDETKGKMVQKAKIEIVLGKSDKFDSLVPPVTNGKTPEEEA 144

Query: 124 GEEKKKAGEESKE 137
             E + + E  +E
Sbjct: 145 SAETEASVEAQEE 157

[Close]

BLAST of CmaCh12G011330 vs. TAIR10
Match: AT1G29250.1 (AT1G29250.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 159.8 bits (403), Expect = 1.2e-39
Identity = 84/110 (76.36%), Postives = 95/110 (86.36%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           A +TQKKNRIQVSNTKKPLFFYVNLAKRY+QQ+ +VELSALGMAI TVVT+AEILKNNG 
Sbjct: 14  AVDTQKKNRIQVSNTKKPLFFYVNLAKRYMQQYTDVELSALGMAIATVVTVAEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEA 120
           A EKK++TSTV +KD+++GR VQKAKIEI L KSEKFD LM AA    EA
Sbjct: 74  AVEKKIMTSTVDIKDDSRGRPVQKAKIEITLAKSEKFDELMAAANEEKEA 123

[Close]

BLAST of CmaCh12G011330 vs. TAIR10
Match: AT2G34160.1 (AT2G34160.1 Alba DNA/RNA-binding protein)

HSP 1 Score: 157.1 bits (396), Expect = 7.6e-39
Identity = 83/109 (76.15%), Postives = 94/109 (86.24%), Query Frame = 1


Query: 10  ATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGL 69
           AT++QKKNRIQVSNTKKPLFFYVNLAKRY+QQ+N+VELSALGMAI TVVT+ EILKNNG 
Sbjct: 14  ATDSQKKNRIQVSNTKKPLFFYVNLAKRYMQQYNDVELSALGMAIATVVTVTEILKNNGF 73

Query: 70  ATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAE 119
           A EKK++TSTV +KD+ +GR VQKAKIEI L KSEKFD LM AA    E
Sbjct: 74  AVEKKIMTSTVDIKDDARGRPVQKAKIEITLVKSEKFDELMAAANEEKE 122

[Close]

BLAST of CmaCh12G011330 vs. NCBI nr
Match: gi|449443233|ref|XP_004139384.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus])

HSP 1 Score: 210.3 bits (534), Expect = 2.1e-51
Identity = 126/144 (87.50%), Postives = 127/144 (88.19%), Query Frame = 1


Query: 1   MTTTIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60
           M  TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV
Sbjct: 1   MAATIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTV 60

Query: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAA 120
           VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT   
Sbjct: 61  VTIAEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVP 120

Query: 121 E---ATAGGGEEKKKAGEESKEGQ 139
           E   A A   EE+KKA EESKE Q
Sbjct: 121 ETVVAVAAAAEEEKKA-EESKEEQ 143

[Close]

BLAST of CmaCh12G011330 vs. NCBI nr
Match: gi|659070696|ref|XP_008456222.1| (PREDICTED: uncharacterized protein At2g34160 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 2.8e-51
Identity = 125/141 (88.65%), Postives = 127/141 (90.07%), Query Frame = 1


Query: 4   TIAVSGAT---ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 63
           TIAVSGAT   ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 3   TIAVSGATPATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 62

Query: 64  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAE-- 123
           AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAT   E  
Sbjct: 63  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATAVPETV 122

Query: 124 -ATAGGGEEKKKAGEESKEGQ 139
            A A  GEE+KKA EE+KE Q
Sbjct: 123 VAVAAAGEEEKKA-EENKEEQ 142

[Close]

BLAST of CmaCh12G011330 vs. NCBI nr
Match: gi|1009117586|ref|XP_015875397.1| (PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba])

HSP 1 Score: 199.9 bits (507), Expect = 2.9e-48
Identity = 115/141 (81.56%), Postives = 120/141 (85.11%), Query Frame = 1


Query: 1   MTTTIAVSGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60
           M T +  S A ETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI
Sbjct: 1   MATMVVSSQAIETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTI 60

Query: 61  AEILKNNGLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEAT 120
           AEILKNNGLATEKKV TSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAA  +A AT
Sbjct: 61  AEILKNNGLATEKKVSTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAAVASATAT 120

Query: 121 AG-------GGEEKKKAGEES 135
                    G E KK++GEE+
Sbjct: 121 EDKENDKEIGKENKKESGEEN 141

[Close]

BLAST of CmaCh12G011330 vs. NCBI nr
Match: gi|255561871|ref|XP_002521944.1| (PREDICTED: uncharacterized protein At2g34160 [Ricinus communis])

HSP 1 Score: 189.5 bits (480), Expect = 3.9e-45
Identity = 103/112 (91.96%), Postives = 104/112 (92.86%), Query Frame = 1


Query: 8   SGATETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 67
           + A   QKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN
Sbjct: 36  NAAQTQQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNN 95

Query: 68  GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEA 120
           GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLM AA  A EA
Sbjct: 96  GLATEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMEAANTATEA 147

[Close]

BLAST of CmaCh12G011330 vs. NCBI nr
Match: gi|1021565989|ref|XP_016174303.1| (PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis])

HSP 1 Score: 188.7 bits (478), Expect = 6.7e-45
Identity = 102/118 (86.44%), Postives = 107/118 (90.68%), Query Frame = 1


Query: 11  TETQKKNRIQVSNTKKPLFFYVNLAKRYIQQHNEVELSALGMAITTVVTIAEILKNNGLA 70
           TET KKNRIQVSNTKKPLFFYVNLAKRYIQQH+EVELSALGMAITTVVTIAEILKNNGLA
Sbjct: 18  TETHKKNRIQVSNTKKPLFFYVNLAKRYIQQHDEVELSALGMAITTVVTIAEILKNNGLA 77

Query: 71  TEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDSLMTAATVAAEATAGGGEEKK 129
           TEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFD+LM AA  +      G ++KK
Sbjct: 78  TEKKVLTSTVGMKDENKGRLVQKAKIEIVLGKSEKFDNLMVAANTSESHQPAGNDDKK 135

The following BLAST results are available for this feature:

BLAST of CmaCh12G011330 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y2416_ARATH	1.3e-37	76.15	Uncharacterized protein At2g34160 OS=Arabidopsis thaliana GN=At2g34160 PE=1 SV=1	[more]

BLAST of CmaCh12G011330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LG69_CUCSA	1.5e-51	87.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G010240 PE=4 SV=1	[more]
B9S7H5_RICCO	2.7e-45	91.96	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0607550 PE=4 SV=1	[more]
A0A067JVY8_JATCU	7.9e-45	87.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23517 PE=4 SV=1	[more]
W9RI44_9ROSA	6.7e-44	85.47	Uncharacterized protein OS=Morus notabilis GN=L484_024556 PE=4 SV=1	[more]
A0A0D3DCA9_BRAOL	8.8e-44	79.26	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]

BLAST of CmaCh12G011330 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G04620.1	1.7e-43	72.93	Alba DNA/RNA-binding protein	[more]
AT1G29250.1	1.2e-39	76.36	Alba DNA/RNA-binding protein	[more]
AT2G34160.1	7.6e-39	76.15	Alba DNA/RNA-binding protein	[more]

BLAST of CmaCh12G011330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443233\|ref\|XP_004139384.1\|	2.1e-51	87.50	PREDICTED: uncharacterized protein At2g34160 [Cucumis sativus]	[more]
gi\|659070696\|ref\|XP_008456222.1\|	2.8e-51	88.65	PREDICTED: uncharacterized protein At2g34160 [Cucumis melo]	[more]
gi\|1009117586\|ref\|XP_015875397.1\|	2.9e-48	81.56	PREDICTED: uncharacterized protein At2g34160 [Ziziphus jujuba]	[more]
gi\|255561871\|ref\|XP_002521944.1\|	3.9e-45	91.96	PREDICTED: uncharacterized protein At2g34160 [Ricinus communis]	[more]
gi\|1021565989\|ref\|XP_016174303.1\|	6.7e-45	86.44	PREDICTED: uncharacterized protein At2g34160-like [Arachis ipaensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002775	DNA/RNA-bd_Alba-like
IPR014560	UCP030333_Alba

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006302	double-strand break repair
biological_process	GO:0010332	response to gamma radiation
biological_process	GO:0048235	pollen sperm cell differentiation
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh12G011330.1	CmaCh12G011330.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002775	DNA/RNA-binding protein Alba-like	GENE3D	G3DSA:3.30.110.20		coord: 15..121 score: 3.5
IPR002775	DNA/RNA-binding protein Alba-like	PFAM	PF01918	Alba	coord: 17..79 score: 2.0
IPR002775	DNA/RNA-binding protein Alba-like	unknown	SSF82704	AlbA-like	coord: 16..111 score: 1.18
IPR014560	Uncharacterised conserved protein UCP030333, DNA/RNA-binding Alba-related	PIR	PIRSF030333	UCP030333_Alba	coord: 1..136 score: 9.6
None	No IPR available	PANTHER	PTHR31947	FAMILY NOT NAMED	coord: 10..128 score: 5.3
None	No IPR available	PANTHER	PTHR31947:SF5	SUBFAMILY NOT NAMED	coord: 10..128 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh12G011330	Cucsa.133090	Cucumber (Gy14) v1	cgycmaB0364
CmaCh12G011330	Cla019790	Watermelon (97103) v1	cmawmB170
CmaCh12G011330	Csa2G010240	Cucumber (Chinese Long) v2	cmacuB173
CmaCh12G011330	MELO3C004397	Melon (DHL92) v3.5.1	cmameB172
CmaCh12G011330	ClCG02G016810	Watermelon (Charleston Gray)	cmawcgB156
CmaCh12G011330	CSPI02G02790	Wild cucumber (PI 183967)	cmacpiB174
CmaCh12G011330	CmoCh12G011530	Cucurbita moschata (Rifu)	cmacmoB177
CmaCh12G011330	Lsi11G004260	Bottle gourd (USVL1VR-Ls)	cmalsiB159
CmaCh12G011330	Cp4.1LG00g04330	Cucurbita pepo (Zucchini)	cmacpeB165
CmaCh12G011330	Cp4.1LG11g09900	Cucurbita pepo (Zucchini)	cmacpeB171
CmaCh12G011330	Cp4.1LG07g09860	Cucurbita pepo (Zucchini)	cmacpeB203
CmaCh12G011330	MELO3C004397.2	Melon (DHL92) v3.6.1	cmamedB187
CmaCh12G011330	Cla97C02G042600	Watermelon (97103) v2	cmawmbB175
CmaCh12G011330	CsGy2G002900	Cucumber (Gy14) v2	cgybcmaB178
CmaCh12G011330	Carg17605	Silver-seed gourd	carcmaB1000
CmaCh12G011330	Carg22995	Silver-seed gourd	carcmaB1483

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh12G011330	CmaCh05G012170	Cucurbita maxima (Rimu)	cmacmaB190

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh12G011330	Cucurbita moschata (Rifu)	cmacmoB190
CmaCh12G011330	Silver-seed gourd	carcmaB1074
CmaCh12G011330	Cucumber (Chinese Long) v3	cmacucB0202
CmaCh12G011330	Wax gourd	cmawgoB0177