Cucsa.106550 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.106550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	Small nuclear ribonucleoprotein sm d2, putative
Location	scaffold00930 : 121505 .. 124271 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGGTAAGTGTTCTCTCTCTTTCTCTCTCCATCTCACTCTCCGTTTCGTTTTACAGCTACTCTTTCTTTCTCTCTTCGTTTAGTTTCACTGTTTCCTCCTACTGAATTTTTTATGCAGTTTCCCCCATTACTTTGTTCTTAAGATATTGCATCTGACTTATATGTTATTTTCTAAGATATTGCATCTCTTCTCTCGCTGTGAATTTTTCTTGAATAGTTTAACCTAGACTTTGGTCTCTCTGGAGCATGATGTTCTTTAGAGTTTAGGGTAACCTTAGGAACATACTGTTTATGAAATTATGCTGGTGCGGTTTTATTTACTGTCATTCTTTCTATGTGCTTATGGTCGTATGTTTGTCATGTAATTGCAGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGGTATTGTGTTTTTCGGTATTTGTATACTTTGTTTGTTCGCACATCTTGGTCTTTTTtGTTCTTTTACTAAATTCTTTACATACTAATGGGTTTCGTGTCCTCTTTTTTGTCTTCAATTGCAGCCGACCGATGGAGGAAGATGTAAGTTCCTTCAGTCTGTTATGCTTTCAATTTTAGTACTTTCATCCAATATATGTTGCCTTTGCCTAATTGGTCTAGCCTCTATATTAGCACAAGTGTTAAAGAATCATGACTTGCTCTCGAGTCATTACCAACGCTTTTCATTGTATAATCTCTGCGGCTTCTTTTtCTTTTCGTCTACACAACTCTTTTAAGTTGGAAGAAAATGTTGTCCTTCGTATCGAAAAATCATGATATTTTTTtCCACAACTGTTCGACTAGTCCACATGAAGCAACTATTAGACTCTTTCAATTGAAGTTATTAATTTTtGGGTAAGGTTTTGTCATGTTTTTTtAATTAGTCTATTTATTTTTTAAACCTTTAGTTAAAAAGGTCGGCTTCATGTCAAATTTAAATATAACCAAATTCTACTGGTTGAATGATATTTTTATATATTGAGAGTTGATGCTCATAAACCATTTGACAAGTTCAACTGGCCTTTGTGTTTGGACCAGGAAGGCCAGATATTTTTTATGTCTTCAAAAAGAAATTTTCTTATTTTCTATCATTCACCTGGCTACCGTGAATGATGTTTCTTGAACCTCTAGTAGAGCAATACCAGTTCTATGTTGGGAATTCGTTGGTAGTTGGTCTTTTAAAAGGGTTTAATTATTAGCATTGTAATTTCTTTCTCAATAAAAATCTATTTGTTTCTGTTAAATGTGAAATTTTTGCTATCTTTCAGGTGCTATGATTAGCAAGAAATGATATGATTTCTTGAGACTAGTTTTGTACCTTTTTAAGTGAAACTGATGATCTTTTGATTCAGTTCTGTTTTCTCTTTCAACTTTGTTTCTATAGTTGGTTAATGTATTTTTTtCCCTATCCATTTGATGGTTGTTTACCAACTTCTTACACTTTTGCATTCTACTTATGAAAAAATGTTTAGTTTTTAATTAAAAAAAAaTGAACTGTGACTTTTCCATGAAACTCATTTCAATAAGTAAATTACCATAAAGGTTTCATTTTTTCTTTCTTTCTAGTGTTAGCTTAATGTTCTCTCTCTAGAGTTTTTTTTTtCTTGGTTTAATCTCTCGAGTCACCCTTCCTTAGTTTGTTCCTGTCATACTGCAAAATCCTTGGACTTGTGTTCTATTTTTTTTTtGACTTCCAACTCTACTGAAGTGTTTCTACAAACACAATTACGAATTACTTGCTTTGAACTCTCTGCAGACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCATTTGTTTGTGTGTTTAACAGTTCCACTTGTAAATCAAGGCATAACTGTTCAAGTGAAAATGATGTTTATATGTTTTGGACCTTCTTGACAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTTTGTCTTATTGATGTGTGCTTACTATTTACTCTTTTTCTTGCTTAGACTCAAGTCATGGATCTTATGTTGTATTACTATGACCAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTTTGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAAATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCT

mRNA sequence

TATGAACCTTAGTTTTTCCACGCGCGAGCCATttctcctgctcatcttctccttcgatcttcttctttattcttcgccacttcgccgccctcctctccctttccttcaccttcactcttcttctctcccgccgCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTTTGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAAATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCT

Coding sequence (CDS)

ATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*

Homology

[Close]

BLAST of Cucsa.106550 vs. Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of Cucsa.106550 vs. Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of Cucsa.106550 vs. Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 4.7e-46
Identity = 87/100 (87.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of Cucsa.106550 vs. Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-45
Identity = 86/100 (86.00%), Postives = 95/100 (95.00%), Query Frame = 1


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]

BLAST of Cucsa.106550 vs. Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 7.0e-42
Identity = 81/100 (81.00%), Postives = 91/100 (91.00%), Query Frame = 1


Query: 7   EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 66
           E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 67  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 107
           WTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74  WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]

BLAST of Cucsa.106550 vs. TrEMBL
Match: A0A0A0KUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.3e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]

BLAST of Cucsa.106550 vs. TrEMBL
Match: A0A0D2V8E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G029800 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 4.7e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. TrEMBL
Match: A0A0B0M8C5_GOSAR (Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_02167 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.1e-53
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTPKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. TrEMBL
Match: A0A0B0PTS4_GOSAR (Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_13093 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. TrEMBL
Match: A0A0D2UD29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G328400 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 204.1 bits (518), Expect = 4.2e-53
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1


Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of Cucsa.106550 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 204.1 bits (518), Expect = 4.2e-53
Identity = 101/109 (92.66%), Postives = 105/109 (96.33%), Query Frame = 1


Query: 1   MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 60
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 61  VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of Cucsa.106550 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.0e-06
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1


Query: 13  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 72
           EEE     PL ++ +S+  + ++ +  R++++L G++ AFD+H NM+L +V E  T V  
Sbjct: 4   EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 63

Query: 73  TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
             +  ++     K R I  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90

[Close]

BLAST of Cucsa.106550 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.3e-06
Identity = 27/90 (30.00%), Postives = 54/90 (60.00%), Query Frame = 1


Query: 13  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 72
           EE+     PL ++ +S++   ++ +  R++++L G++ AFD+H NM+L +V E+ T +  
Sbjct: 4   EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 63

Query: 73  TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 103
             +  ++     K R +  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90

[Close]

BLAST of Cucsa.106550 vs. NCBI nr
Match: gi|449457536|ref|XP_004146504.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. NCBI nr
Match: gi|700198152|gb|KGN53310.1| (hypothetical protein Csa_4G046730 [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 4.7e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]

BLAST of Cucsa.106550 vs. NCBI nr
Match: gi|1012100367|ref|XP_015957200.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis])

HSP 1 Score: 216.5 bits (550), Expect = 2.3e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDTSK EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. NCBI nr
Match: gi|823261734|ref|XP_012463603.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Gossypium raimondii])

HSP 1 Score: 214.9 bits (546), Expect = 6.8e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of Cucsa.106550 vs. NCBI nr
Match: gi|645259330|ref|XP_008235310.1| (PREDICTED: probable small nuclear ribonucleoprotein Sm D2 [Prunus mume])

HSP 1 Score: 214.5 bits (545), Expect = 8.9e-53
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 1


Query: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60
           MSRPMEED +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDVAKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVL 60

Query: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

The following BLAST results are available for this feature:

BLAST of Cucsa.106550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMD2_HUMAN	4.7e-46	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1	[more]
SMD2_MOUSE	4.7e-46	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1	[more]
SMD2_BOVIN	4.7e-46	87.00	Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1	[more]
SMD2_DROME	1.0e-45	86.00	Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD...	[more]
SMD2_CAEEL	7.0e-42	81.00	Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-...	[more]

BLAST of Cucsa.106550 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUK4_CUCSA	3.3e-54	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1	[more]
A0A0D2V8E2_GOSRA	4.7e-53	98.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_013G029800 PE=4 SV=1	[more]
A0A0B0M8C5_GOSAR	8.1e-53	98.13	Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_021...	[more]
A0A0B0PTS4_GOSAR	1.1e-52	98.13	Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_130...	[more]
A0A0D2UD29_GOSRA	1.1e-52	98.13	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G328400 PE=4 SV=1	[more]

BLAST of Cucsa.106550 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47640.1	4.2e-53	92.66	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	4.2e-53	92.66	Small nuclear ribonucleoprotein family protein	[more]
AT1G76860.1	1.0e-06	33.33	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	1.3e-06	30.00	Small nuclear ribonucleoprotein family protein	[more]

BLAST of Cucsa.106550 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457536\|ref\|XP_004146504.1\|	4.7e-54	100.00	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus]	[more]
gi\|700198152\|gb\|KGN53310.1\|	4.7e-54	100.00	hypothetical protein Csa_4G046730 [Cucumis sativus]	[more]
gi\|1012100367\|ref\|XP_015957200.1\|	2.3e-53	99.07	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis]	[more]
gi\|823261734\|ref\|XP_012463603.1\|	6.8e-53	98.13	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Gossypium raimondii]	[more]
gi\|645259330\|ref\|XP_008235310.1\|	8.9e-53	97.20	PREDICTED: probable small nuclear ribonucleoprotein Sm D2 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027248	Sm_D2

Vocabulary: **Biological Process**
Term	Definition
GO:0008380	RNA splicing

Vocabulary: **Cellular Component**
Term	Definition
GO:0030532	small nuclear ribonucleoprotein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.106550.1	Cucsa.106550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 28..102 score: 5.6
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 25..104 score: 5.1
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 20..105 score: 9.82
IPR027248	Small nuclear ribonucleoprotein Sm D2	PANTHER	PTHR12777	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 4..107 score: 5.7
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 19..107 score: 6.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.106550	Cla014586	Watermelon (97103) v1	cgywmB147
Cucsa.106550	Csa4G046730	Cucumber (Chinese Long) v2	cgycuB129
Cucsa.106550	MELO3C016382	Melon (DHL92) v3.5.1	cgymeB141
Cucsa.106550	ClCG07G008500	Watermelon (Charleston Gray)	cgywcgB151
Cucsa.106550	CSPI04G05510	Wild cucumber (PI 183967)	cgycpiB130
Cucsa.106550	CmaCh16G006170	Cucurbita maxima (Rimu)	cgycmaB0245
Cucsa.106550	CmaCh04G007540	Cucurbita maxima (Rimu)	cgycmaB0246
Cucsa.106550	CmoCh16G006730	Cucurbita moschata (Rifu)	cgycmoB0244
Cucsa.106550	Cp4.1LG14g01890	Cucurbita pepo (Zucchini)	cgycpeB0237
Cucsa.106550	Cp4.1LG01g07090	Cucurbita pepo (Zucchini)	cgycpeB0238
Cucsa.106550	MELO3C016382.2	Melon (DHL92) v3.6.1	cgymedB141
Cucsa.106550	CsaV3_4G005660	Cucumber (Chinese Long) v3	cgycucB134
Cucsa.106550	Cla97C07G135540	Watermelon (97103) v2	cgywmbB146
Cucsa.106550	Bhi01G001835	Wax gourd	cgywgoB165
Cucsa.106550	Carg14152	Silver-seed gourd	carcgyB1059
Cucsa.106550	Carg05739	Silver-seed gourd	carcgyB1133

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.106550	Wax gourd	cgywgoB167
Cucsa.106550	Cucurbita moschata (Rifu)	cgycmoB0245
Cucsa.106550	Bottle gourd (USVL1VR-Ls)	cgylsiB140