CmaCh16G006170 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G006170
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionSmall nuclear ribonucleoprotein
LocationCma_Chr16 : 3190219 .. 3193761 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTATGCAAGTGTAAGAAGTAGTGTCTATAATGAATTCAGGTATGTACATTTGTTTACTTTAGGGAAGAGTTCAGATATTAAGTAGCTTTTAGCTTATTATTCATTTGGCAGTGTATTGAAACCTACTGATGAAGTCCCTTGGCTTTGAACTCTTAGTGTGTTGTATTGTAAATAACTTTCAGAAGGCTAAATGACCTTTTGTTGGTTTCTTTTTTCTTGTATATTAGCCTCTCTTTGTGTAGATTATATCCTCATTTTAGTTGGGTTATTATATTCTTAGTGAAGTGCGAGTTTATAACTACTTTATAAGGATGTAGAAAACTCTCTTTAACAGATGTGTTTTAAAATCGTGAGGCTAATAGCGATACGTAACGGGCCAAAGTGAACAATATCTGCTGGTGGTTGGTTTAAGTTGTTACAAAGAACATTAGAGCTAGTCACCGAATGGTGTGCTAGTGAGAATGTCGACCCCAAGGGGATGGATTGTGAGATCCCACGGGGCTATTTCCAATAGCTAGTCACCAGGAGGTATGCCAGCGAGGACGTTCGACCCTTAAGGGGGTGGATTGTGTCTCACAAGGCTGTTACAAATGATATCAGAGCTAGTCACCGAACGGTGTGCCAACAAGGACGCTGGACCCCCCATAGGTGGATTGTGAGATCCCACATAGTTGTTACAAATGATATCAGAGTTAGTCATCGGGTGGTGTGCCAACGAGGACACTGGACTGCTAGATTGTAAGATCTCACCATCGATTGGAGAGAGGAACTAAGCATTTCTTATAAAGGTGTGAATATGAAATCGCGAGGTTGACGACGATACGTAATGGTTGAAAAAGACTATTACATATCAATTGATTTTTGTTTTTTATTTTTTAATATTGTTTGTTTGCCTAATTTTTTAAAATAAAAAATAAAAAATAAAAAATAATAGGGAGATAGTTATTAAAGGTGTCTTTTAGTAAGATAATTGTTCAACTCATCTATTTATTTATTTCAAATATTTACAATTTACAATTCAATTTAAATACATATTTTAAAAAATTATCTTCAAAATCGTTAAATTTATATAATATATATATATATATATAATTGTATCAATCAAAACGTGTTTTGTTGGTTGAATCCATTTAGTTTTGAATTTAGGATTTTTAGTTCAAAACGCAAAAACCCCTGTCGTTTAGGGTTTTTTTTTTCATTTTTGTTTGTTTAAGGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGGTAAGCTCTCTTTCTCTCTCTGTCGGCCTCTTCTCTTAGTTTCGTTATTTCCTCCTTTCTGATGATTTTTTCGTGCAGTTTCTCCATTATTGTGTTCTTAAGATATTGTATCGAACTGAAATATTATGTACTGAACTCACTCGGGACCTTGATTGAAGAGTTAACATTCTCGTGATGTGTTTTCTTGATTAATTTATCCGACACTGTAGTTTCTTTGGAGCATGATGTTTTTTAGGGCAATTTTAGGCACATCTTGTTTTATGTGATTATGCTGGTGCGGTTGTGATTACTGTTATGCTTTTTATGTGCTTATGGTCGTATCTTTAATGTATTTTCAGCCTAACGCCAAGGACATTGCAGAAGATCTACCTCTAGTTACAAAATGAGGTATTATGTTTTTAGGTTTTTGTATATTTTTTTATGCGCATTTCTTAATCTGCTATTTTTAAATTCATACATACTAATGGCTTTCATGTCCGCCCCCCTTTTGTCTTCAATTGCAGCCGACCAATGGAGGAAGATGTAAGTTCTTTAGTCTTTTATCCTTTCAGTTTCAGTACTTTCATCCAATACATGCTGCCAAATTGGTTCAGTTTTATGTCTTATGCACAAGTGTGAATGAATCTCTTATAATTTATTTGTTTCTTTTAAATATGAAATGTCTGCTATCTTCTTGGTGCTATGGTTGGCAGGAAGCAATATGATTTTTTAAGGCTAGTTTTATACCTGCTGAAGTAAAACTTTGGTTCAATTCTGTATTCTCTTTCCACTTTGTTTTTATGGTTGATTATTGTGATTTTTTTCCCCATCTATTTGATGATTGTTTACCAATTTCTTACTCTTTTGCGTTATCCAAAAGGTTACATTTCTAATAAAAAAAATGATAACTATGACAATTCCATAAAGTTTATTTATTTTAATTTTTTTCAGTAACTATGTAGGTTCTGTTTCTTTTTTATCATATCTAGTGGTAGCTCAACGTTTTCTTTTACTAGGATTTTTTTTTTCAAATCTTTCCAGCCCCCCTTCCCCAGTGTGTTCCTTTGGGGTTTTATTGCAAAATCTTTGGACTTCTGCAATCGTATTCTATTTATATTTTTACTTCCAACTTTACTGTAGTGTTTCTACAAACACCATTAGAGTGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTCTGCGTGTTTAACAGCTGCGCTTTGTAATTAACAGGCAGAACTTTTCAGTTAAAAACTATCTCTATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTGCTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTCATCTTATGTATTATTACTATGACCAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

mRNA sequence

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTTGGCCATCTCGTAATATGTTCAGTTTGACTTCTTGAGTTGACTTCATATGCATGCCAATCTTATTGTCTTTCTCCCTGTGATAAACATCAAACTTTCATTTGATAGCTTGATCTTCTTCTAAGTTTGGAGCTATCTATATCAGTTTGTACTTCATTTTAATCTCTCTTTTCCTGCGAACCATTTGCCAAATACTGTAACAATAGAAATTGTATCTGTTTAGGTATCAGAGATTACTTAGTAGAAATGCTATATCTGTTTTTAACGTGTGTCTTTTATGGAGTTTTGTCTTTGCAACTTGGGACATCGTTTGTTTTGATCACAAGTGATATCATCATTCAGAATTATGAGATCTTTTGGGCTTGGTAGATCATGTGTTGTTCCTCATGTCTTTTTCCTTTGTTTAACTATGTTCATGTGTACACACCAAGGAATTAAATTTACACTTTCAT

Coding sequence (CDS)

ATGACCTTGGCAAAGCTGTGTAAAACTGCATTTGATATGCTTATTCTGTGCTGCAAACAAGATTCTGGTGAAGGGTTGATATGTGAAATGAATACTATTTCGACATCGGCGCACACATTTCTTCTGCCCATCTTCTCGTTCGATCTTCTTCGTTATTCTTCGCCACTTCGCCGCCTACCTCGCCCTCGCCTTCTCCGTCGGTCTCCTTCTCCGCTTCCGACTAGCAAAAATGAGGAAGAGGAGTTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGATTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MTLAKLCKTAFDMLILCCKQDSGEGLICEMNTISTSAHTFLLPIFSFDLLRYSSPLRRLPRPRLLRRSPSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Homology
[Close]
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 4.9e-45
Identity = 87/102 (85.29%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P    K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.1e-44
Identity = 86/102 (84.31%), Postives = 95/102 (93.14%), Query Frame = 1 

Query: 70  SPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVR 129
           +P   ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+
Sbjct: 11  TPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 70

Query: 130 EMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           EMWTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 71  EMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 7.3e-41
Identity = 80/94 (85.11%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 78  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 137
           E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK
Sbjct: 20  EDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPK 79

Query: 138 TGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 172
           TGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 80  TGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of CmaCh16G006170 vs. TrEMBL
Match: A0A0A0KUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 8.6e-49
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 69  PSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 128
           P    TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 85  PMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 144

Query: 129 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 145 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]
BLAST of CmaCh16G006170 vs. TrEMBL
Match: G7LBH7_MEDTR (Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_8g105890 PE=4 SV=2)

HSP 1 Score: 199.1 bits (505), Expect = 4.3e-48
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 1 

Query: 72  LPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 131
           L   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM
Sbjct: 24  LAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 83

Query: 132 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 84  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 124

[Close]
BLAST of CmaCh16G006170 vs. TrEMBL
Match: A0A0S3QWM2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G011900 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.6e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 75  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 134
           +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 11  AKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70

Query: 135 VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 71  VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of CmaCh16G006170 vs. TrEMBL
Match: V7ACW7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G008300g PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 5.6e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 75  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 134
           +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 12  AKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 71

Query: 135 VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of CmaCh16G006170 vs. TrEMBL
Match: G7LBH6_MEDTR (Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_8g105890 PE=2 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 7.3e-48
Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 12  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 71

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 72  PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

[Close]
BLAST of CmaCh16G006170 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.9e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of CmaCh16G006170 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.9e-49
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 1 

Query: 76  KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEV 135
           K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEV
Sbjct: 13  KTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEV 72

Query: 136 PKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           PKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 73  PKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of CmaCh16G006170 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06
Identity = 30/90 (33.33%), Postives = 53/90 (58.89%), Query Frame = 1 

Query: 78  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 137
           EEE     PL ++ +S+  + ++ +  R++++L G++ AFD+H NM+L +V E  T V  
Sbjct: 4   EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 63

Query: 138 TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 168
             +  ++     K R I  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90

[Close]
BLAST of CmaCh16G006170 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-06
Identity = 27/90 (30.00%), Postives = 54/90 (60.00%), Query Frame = 1 

Query: 78  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 137
           EE+     PL ++ +S++   ++ +  R++++L G++ AFD+H NM+L +V E+ T +  
Sbjct: 4   EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 63

Query: 138 TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 168
             +  ++     K R +  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90

[Close]
BLAST of CmaCh16G006170 vs. NCBI nr
Match: gi|449457536|ref|XP_004146504.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 69  PSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 128
           P    TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 4   PMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 63

Query: 129 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 64  REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of CmaCh16G006170 vs. NCBI nr
Match: gi|700198152|gb|KGN53310.1| (hypothetical protein Csa_4G046730 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 1.2e-48
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = 1 

Query: 69  PSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 128
           P    TSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 85  PMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 144

Query: 129 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 145 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 188

[Close]
BLAST of CmaCh16G006170 vs. NCBI nr
Match: gi|922330387|ref|XP_003630988.2| (small nuclear ribonucleoprotein [Medicago truncatula])

HSP 1 Score: 199.1 bits (505), Expect = 6.1e-48
Identity = 98/101 (97.03%), Postives = 98/101 (97.03%), Query Frame = 1 

Query: 72  LPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 131
           L   KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM
Sbjct: 24  LAVGKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 83

Query: 132 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 84  WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 124

[Close]
BLAST of CmaCh16G006170 vs. NCBI nr
Match: gi|1012100367|ref|XP_015957200.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis])

HSP 1 Score: 199.1 bits (505), Expect = 6.1e-48
Identity = 99/104 (95.19%), Postives = 99/104 (95.19%), Query Frame = 1 

Query: 69  PSPLPTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 128
           P    TSK EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV
Sbjct: 4   PMEEDTSKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENV 63

Query: 129 REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 64  REMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of CmaCh16G006170 vs. NCBI nr
Match: gi|950930093|ref|XP_014503527.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiata])

HSP 1 Score: 198.7 bits (504), Expect = 8.0e-48
Identity = 97/98 (98.98%), Postives = 98/98 (100.00%), Query Frame = 1 

Query: 75  SKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 134
           +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE
Sbjct: 11  AKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTE 70

Query: 135 VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 173
           VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 71  VPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 108

The following BLAST results are available for this feature:
BLAST of CmaCh16G006170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SMD2_HUMAN4.9e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1[more]
SMD2_BOVIN4.9e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1[more]
SMD2_MOUSE4.9e-4585.29Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1[more]
SMD2_DROME1.1e-4484.31Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD... [more]
SMD2_CAEEL7.3e-4185.11Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-... [more]
BLAST of CmaCh16G006170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK4_CUCSA8.6e-4996.15Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1[more]
G7LBH7_MEDTR4.3e-4897.03Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_8g105890 PE=4 SV=2[more]
A0A0S3QWM2_PHAAN5.6e-4898.98Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G011900 PE=... [more]
V7ACW7_PHAVU5.6e-4898.98Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G008300g PE=4 SV=1[more]
G7LBH6_MEDTR7.3e-48100.00Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_8g105890 PE=2 SV=1[more]
BLAST of CmaCh16G006170 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47640.15.9e-4995.88 Small nuclear ribonucleoprotein family protein[more]
AT3G62840.15.9e-4995.88 Small nuclear ribonucleoprotein family protein[more]
AT1G76860.12.1e-0633.33 Small nuclear ribonucleoprotein family protein[more]
AT1G21190.13.6e-0630.00 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmaCh16G006170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457536|ref|XP_004146504.1|1.2e-4896.15PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus][more]
gi|700198152|gb|KGN53310.1|1.2e-4896.15hypothetical protein Csa_4G046730 [Cucumis sativus][more]
gi|922330387|ref|XP_003630988.2|6.1e-4897.03small nuclear ribonucleoprotein [Medicago truncatula][more]
gi|1012100367|ref|XP_015957200.1|6.1e-4895.19PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis][more]
gi|950930093|ref|XP_014503527.1|8.0e-4898.98PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiat... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027248Sm_D2
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G006170.1CmaCh16G006170.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 93..167
score: 2.1
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 90..169
score: 5.1
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 85..170
score: 4.36
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 76..172
score: 1.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 84..172
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G006170Cucsa.106550Cucumber (Gy14) v1cgycmaB0245
CmaCh16G006170Cla014586Watermelon (97103) v1cmawmB307
CmaCh16G006170Csa4G046730Cucumber (Chinese Long) v2cmacuB337
CmaCh16G006170MELO3C016382Melon (DHL92) v3.5.1cmameB301
CmaCh16G006170ClCG07G008500Watermelon (Charleston Gray)cmawcgB301
CmaCh16G006170CSPI04G05510Wild cucumber (PI 183967)cmacpiB342
CmaCh16G006170CmoCh04G008050Cucurbita moschata (Rifu)cmacmoB337
CmaCh16G006170CmoCh16G006730Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G006170Lsi07G002570Bottle gourd (USVL1VR-Ls)cmalsiB326
CmaCh16G006170Cp4.1LG14g01890Cucurbita pepo (Zucchini)cmacpeB344
CmaCh16G006170Cp4.1LG01g07090Cucurbita pepo (Zucchini)cmacpeB354
CmaCh16G006170MELO3C016382.2Melon (DHL92) v3.6.1cmamedB350
CmaCh16G006170CsaV3_4G005660Cucumber (Chinese Long) v3cmacucB0393
CmaCh16G006170Cla97C07G135540Watermelon (97103) v2cmawmbB351
CmaCh16G006170Bhi01G001835Wax gourdcmawgoB0441
CmaCh16G006170CsGy4G005390Cucumber (Gy14) v2cgybcmaB498
CmaCh16G006170Carg05739Silver-seed gourdcarcmaB1409
CmaCh16G006170Carg14152Silver-seed gourdcarcmaB1286
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh16G006170CmaCh04G007540Cucurbita maxima (Rimu)cmacmaB350
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G006170Wax gourdcmawgoB0432
CmaCh16G006170Cucurbita maxima (Rimu)cmacmaB349
CmaCh16G006170Cucurbita moschata (Rifu)cmacmoB336
CmaCh16G006170Wild cucumber (PI 183967)cmacpiB349
CmaCh16G006170Cucumber (Chinese Long) v2cmacuB345
CmaCh16G006170Melon (DHL92) v3.5.1cmameB310
CmaCh16G006170Watermelon (Charleston Gray)cmawcgB291
CmaCh16G006170Watermelon (97103) v1cmawmB321
CmaCh16G006170Cucurbita pepo (Zucchini)cmacpeB350
CmaCh16G006170Bottle gourd (USVL1VR-Ls)cmalsiB305
CmaCh16G006170Cucumber (Gy14) v2cgybcmaB748
CmaCh16G006170Melon (DHL92) v3.6.1cmamedB361
CmaCh16G006170Silver-seed gourdcarcmaB0561
CmaCh16G006170Cucumber (Chinese Long) v3cmacucB0410
CmaCh16G006170Watermelon (97103) v2cmawmbB327