Carg14152 (gene) Silver-seed gourd

Overview
NameCarg14152
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsmall nuclear ribonucleoprotein Sm D2-like
LocationCucurbita_argyrosperma_scaffold_045 : 286340 .. 288915 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCAATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGGTCAGCTCTCTCTCTCTCTCTCTCTCTCTGATAAATTCTTCTCTATCTTTCCATTTCTCTCCTCCCTCTGTTCTCATCTCTCAATCTCACTCTCAGTTTTGGTTTTATATTCGGTCTTTCTTTCTCTTTTCTTTTAGTTGCATTGTTTCGTCCTTCCTGTTGTTTTTTTCGTGCAGTTTCCCTAGTAGTGTGTTCTTAAACTATTGCATCTGACTGAGGAATTATTACTTGAATGTTTTATGATGAGTACATGTAATATCTTGTTTGCCTCTTAGGATGAAAATAGTTCAATTTTTCATTTCCTGAGTTTATCAATGCTCAACAAGCACTGGAGACCTTGAGTCAAGGGTTAATATTCTCATTCTGTGTTTTCTCGAACAATTTAAGCCTCGACTATAGTCTCTCTGGAACATGATGTTCTTTAGGGCAGCTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACGGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGTATTTTGTTCTTTGGTATTTGCATATTTGTTTATGCGACATCTTAGTCTTCCATTTGTTAATTCTAACATACTAATGCCTTTCATATCCTCCCTCTTTTGTCTTCAATTTCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACCTTTTTCTTATGCGCAAGTATGTTTGAATCATGTCTTACTCTTGAGTCGTTATAAAAGCTTTTCATTGTATAGTATCTTCGGCTCCTGTTCCTTTTCATTGACACAACTCTTTTGAGTTGGATGAAAATTTTATCCTTTGTACTGAAAAATTATGATTTCTCTTTCTAATAATCATGATCCTGTAGGCCAGTTAGTACTTACCTCTGCTAATGCCCTTGAGGCAACTATTGAACTCTCTTTAAATTTATTAAAATTGGATAACATTTTAGCATGGTATTTTTTTTTGTCTTTAGTTAAAGGTCAGCTTTATGTCAATTTTTAATTTTACTAAATTCTGCTGATTGAATGATATTTTGATATATTGGGAGTTCGATGCTTGAAAACTCGATATATAATTAAGGTTTGGAAGTTATGATTTTTAGTTATCTATGTCAGAAACCCTGTGAAAAGTTCACATGGCTTTTGTTGTTTAGACTAGGAAGGTTGGATATTTGTAATAACTTAAAAAAAAGGAAAAGATCTCATTTTCTATGCCCCTTGGTATTATGTGAATAATGTTGTATTCTTGAGTCATTTATTTCTCCATCCCGAGTTTGCTGATGCGCTTTAGTTTTGGTTTAGTGTACACTATCTTGAATTTCTCTAGTAGAGAAATTCCTTGACAGTTGGTCTTCAAAACGGGTTTTTATTTTTTACTTACTATGTTGGAAATTCCTTGGTAGTAGGTCTTTAAAATGGCGTTTTATTTTTTTTACTTCTTTTGGGTGCTATAGTTTGGCTGGCAAGAAACTGTATGATTTTTTAAGACGTGTTTTTATACCTTTTGGAGTAAAACTGATGATCTTTAGATTCAGTGCCGTTTTTTCTTTCAACATTGTTTCTATGGTTGATTATTGTGGTATTTTTCCCTTCCCATTTGATGATTGTTACCAAGTTACTCTTTCGTAAGCTATTTATAAAATGGCTTTATTTATAATTTTTTAAAAGTGATAACTACGACAATTTCATGAAGCTCATTTCTTTCAAGGAACCTTTTTTTTTAAATCTTTCCAGGCCCCCTTCCCTGTTGTTCCTTTTGGGGGGGGGTGGGGGGGTTGGTGTTATACTGCAAGATCTTTGGACTTCTTCAATTTTGTTCTGTTTATTACTTGAAACTTTACTGAAGTGCTACTAGAACGTCATTAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTATGCTTTGTTTGTGTGTGTTAAAGAGTTGTGCCTTGTAATTCGCAGGTGAACTGTTTAGGTAAAAACCCTCATGTTTTGGACCCCCTCGACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTCTTGATGTGTGCTTACTTTTTTCCTTGCTTTGTATTGTAGACTCGTGAGTTACGTGTCATGTATAATTACAATGTCTAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC

mRNA sequence

ATGCACAAAACCGCGCCCTCGCCCTCGCCCTCTCCCCCTCCTTCTCCAATCTTCTTCGTTATTCATCGCCACTTCGCCGCCGACCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGAAGTACTTACTTCGAATCCTTTGCAGACTAACAAGAATGAAGAAGAGGAATTTAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC

Coding sequence (CDS)

ATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTCGATCGCCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTATTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCC

Protein sequence

MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMFLRGDSVIIVLRNP
Homology
[Close]
BLAST of Carg14152 vs. NCBI nr
Match: XP_022942850.1 (small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 167.2 bits (422), Expect = 2.4e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK
Sbjct: 26  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 85

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 86  DRFISKMFLRGDSVIIVLRNP 106

[Close]
BLAST of Carg14152 vs. NCBI nr
Match: XP_002320342.1 (small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >XP_011033534.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Populus euphratica] >XP_011011216.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Populus euphratica] >XP_024450562.1 small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >ABK92681.1 unknown [Populus trichocarpa] >PNT04530.1 hypothetical protein POPTR_014G129100v3 [Populus trichocarpa] >PNT04531.1 hypothetical protein POPTR_014G129100v3 [Populus trichocarpa] >PNT50772.1 hypothetical protein POPTR_002G204300v3 [Populus trichocarpa] >PNT50773.1 hypothetical protein POPTR_002G204300v3 [Populus trichocarpa])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg14152 vs. NCBI nr
Match: NP_001241022.1 (uncharacterized protein LOC100793233 [Glycine max] >ACU17317.1 unknown [Glycine max])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg14152 vs. NCBI nr
Match: XP_004146504.1 (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 26  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 85

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 86  DRFISKMFLRGDSVIIVLRNP 106

[Close]
BLAST of Carg14152 vs. NCBI nr
Match: XP_007131373.1 (hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris] >ESW03367.1 hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 28  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg14152 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-40
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg14152 vs. TAIR10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-40
Identity = 77/81 (95.06%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA P+N+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg14152 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 9  QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMF 68
          ++ +  R++++L G++ AFD+H NM+L +V E  T V    +  ++     K R I  +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLF 82

Query: 69 LRGDSVIIV 78
          +RGD VI+V
Sbjct: 83 VRGDGVILV 90

[Close]
BLAST of Carg14152 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05
Identity = 22/69 (31.88%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 9  QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISKMF 68
          ++ +  R++++L G++ AFD+H NM+L +V E+ T +    +  ++     K R +  +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLF 82

Query: 69 LRGDSVIIV 78
          +RGD VI+V
Sbjct: 83 VRGDGVILV 90

[Close]
BLAST of Carg14152 vs. TAIR10
Match: AT5G44500.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 41.2 bits (95), Expect = 3.6e-04
Identity = 21/69 (30.43%), Postives = 40/69 (57.97%), Query Frame = 0 

Query: 7  NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDRFISK 66
          N ++ +  ++ ++L+G+  AFDRH N+VL +  E + ++P     KK  +   + R +  
Sbjct: 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEE-FRKLPPAKGNKKTNEEREERRTLGL 73

Query: 67 MFLRGDSVI 76
          + LRG+ VI
Sbjct: 74 VLLRGEEVI 81

[Close]
BLAST of Carg14152 vs. Swiss-Prot
Match: sp|Q3SZF8|SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg14152 vs. Swiss-Prot
Match: sp|P62316|SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg14152 vs. Swiss-Prot
Match: sp|P62317|SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 71/79 (89.87%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++P+NKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg14152 vs. Swiss-Prot
Match: sp|Q9VI10|SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 71/79 (89.87%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +P+NKDR
Sbjct: 34  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDR 93

Query: 63  FISKMFLRGDSVIIVLRNP 82
           FISKMFLRGDSVI+VLRNP
Sbjct: 94  FISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Carg14152 vs. Swiss-Prot
Match: sp|Q54NC5|SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44689 GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.3e-35
Identity = 72/81 (88.89%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+PINK
Sbjct: 24  MDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINK 83

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVI+VL+NP
Sbjct: 84  DRFISKMFLRGDSVILVLKNP 104

[Close]
BLAST of Carg14152 vs. TrEMBL
Match: tr|A0A1S2YDS1|A0A1S2YDS1_CICAR (small nuclear ribonucleoprotein Sm D2-like OS=Cicer arietinum OX=3827 GN=LOC101515130 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg14152 vs. TrEMBL
Match: tr|A0A1U8APN2|A0A1U8APN2_NELNU (small nuclear ribonucleoprotein Sm D2-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104606181 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 29  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 88

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 89  DRFISKMFLRGDSVIIVLRNP 109

[Close]
BLAST of Carg14152 vs. TrEMBL
Match: tr|A9P8H8|A9P8H8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G204300v3 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg14152 vs. TrEMBL
Match: tr|A0A0R0K0R3|A0A0R0K0R3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
          MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60

Query: 61 DRFISKMFLRGDSVIIVLRNP 82
          DRFISKMFLRGDSVIIVLRNP
Sbjct: 61 DRFISKMFLRGDSVIIVLRNP 81

[Close]
BLAST of Carg14152 vs. TrEMBL
Match: tr|I1K5I1|I1K5I1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPINK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQP+NK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

The following BLAST results are available for this feature:
BLAST of Carg14152 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022942850.12.4e-38100.00small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_023523856.1 ... [more]
XP_002320342.13.1e-3898.77small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >XP_011033534.1 PRED... [more]
NP_001241022.13.1e-3898.77uncharacterized protein LOC100793233 [Glycine max] >ACU17317.1 unknown [Glycine ... [more]
XP_004146504.13.1e-3898.77PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] >XP_0084... [more]
XP_007131373.13.1e-3898.77hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris] >ESW03367.1 hypothet... [more]
BLAST of Carg14152 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47640.11.8e-4095.06Small nuclear ribonucleoprotein family protein[more]
AT3G62840.11.8e-4095.06Small nuclear ribonucleoprotein family protein[more]
AT1G76860.13.2e-0534.78Small nuclear ribonucleoprotein family protein[more]
AT1G21190.14.2e-0531.88Small nuclear ribonucleoprotein family protein[more]
AT5G44500.13.6e-0430.43Small nuclear ribonucleoprotein family protein[more]
BLAST of Carg14152 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3SZF8|SMD2_BOVIN3.0e-3789.87Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
sp|P62316|SMD2_HUMAN3.0e-3789.87Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
sp|P62317|SMD2_MOUSE3.0e-3789.87Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
sp|Q9VI10|SMD2_DROME4.0e-3789.87Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
sp|Q54NC5|SMD2_DICDI1.3e-3588.89Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44... [more]
BLAST of Carg14152 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S2YDS1|A0A1S2YDS1_CICAR2.0e-3898.77small nuclear ribonucleoprotein Sm D2-like OS=Cicer arietinum OX=3827 GN=LOC1015... [more]
tr|A0A1U8APN2|A0A1U8APN2_NELNU2.0e-3898.77small nuclear ribonucleoprotein Sm D2-like isoform X1 OS=Nelumbo nucifera OX=443... [more]
tr|A9P8H8|A9P8H8_POPTR2.0e-3898.77Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G204300v3 PE=... [more]
tr|A0A0R0K0R3|A0A0R0K0R3_SOYBN2.0e-3898.77Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1[more]
tr|I1K5I1|I1K5I1_SOYBN2.0e-3898.77Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027248Sm_D2
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg14152-RACarg14152-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..79
e-value: 7.7E-18
score: 75.3
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..77
e-value: 2.4E-19
score: 68.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..81
e-value: 8.1E-35
score: 120.4
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..81
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 1..81
e-value: 3.11353E-52
score: 159.033
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 2..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg14152Cla014586Watermelon (97103) v1carwmB0940
Carg14152Csa4G046730Cucumber (Chinese Long) v2carcuB0958
Carg14152MELO3C016382Melon (DHL92) v3.5.1carmeB0924
Carg14152ClCG07G008500Watermelon (Charleston Gray)carwcgB0916
Carg14152CSPI04G05510Wild cucumber (PI 183967)carcpiB0981
Carg14152Cucsa.106550Cucumber (Gy14) v1carcgyB1059
Carg14152CmaCh04G007540Cucurbita maxima (Rimu)carcmaB1288
Carg14152CmaCh16G006170Cucurbita maxima (Rimu)carcmaB1286
Carg14152CmoCh16G006730Cucurbita moschata (Rifu)carcmoB1258
Carg14152Cp4.1LG14g01890Cucurbita pepo (Zucchini)carcpeB1301
Carg14152Cp4.1LG01g07090Cucurbita pepo (Zucchini)carcpeB1303
Carg14152CsGy4G005390Cucumber (Gy14) v2carcgybB0931
Carg14152MELO3C016382.2Melon (DHL92) v3.6.1carmedB0930
Carg14152CsaV3_4G005660Cucumber (Chinese Long) v3carcucB0982
Carg14152Cla97C07G135540Watermelon (97103) v2carwmbB0989
Carg14152Bhi01G001835Wax gourdcarwgoB1087
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg14152Carg05739Silver-seed gourdcarcarB646
The following block(s) are covering this gene:
GeneOrganismBlock
Carg14152Wax gourdcarwgoB1086
Carg14152Silver-seed gourdcarcarB602
Carg14152Cucurbita maxima (Rimu)carcmaB1289
Carg14152Cucurbita moschata (Rifu)carcmoB1259
Carg14152Cucurbita pepo (Zucchini)carcpeB1302
Carg14152Cucurbita pepo (Zucchini)carcpeB1304
Carg14152Wild cucumber (PI 183967)carcpiB0982
Carg14152Bottle gourd (USVL1VR-Ls)carlsiB859
Carg14152Watermelon (Charleston Gray)carwcgB0915
Carg14152Watermelon (97103) v1carwmB0942
Carg14152Watermelon (97103) v2carwmbB0987