CmaCh04G007540 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G007540
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Small nuclear ribonucleoprotein
Location	Cma_Chr04 : 3843134 .. 3846308 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACAAAACCGCGCCCTCGCCCTCTCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTTATCGCCACTTCGCCGCCGACCTCGCCCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGGTCAGTTCTCTCTCTCTCTCTCTCTCTGATTAATTCTTCTCTCTCTTTCCATTTCTCTCCTCCCTCTGTTCTCATCTCTCAATCTCACTCTCAGTTTTGGTTTTATAATTCGTCTTTCTTTCTCTTTTCTTTTAGTTGCATTGTTTCGTCCTTCCTGCTGTTTTTTTTTTTTTGTGCAGTTTCCCTAGTAGTGTGTTCTTAAACTATTGCATCTTACTGAGGTATTATTACTTGAATGTTTTATGATGTGTACATGTAATATCTTGTTTGCCTCTTAGGATGAAAATAGTTCAAATTTTCATTTCCCGAGTTTATCAATGCTCTACAATCACTGGAGACCTTGAGTGAAGGGTTAATATTCTCATTCTGTGTTTTCTCGAACAATTTAAGCCTCGACTATAGTTTCTCTGGAACATGATGTTCTTTAGGGCAACTTTAGGCACATTCTGTTTTATGAGATTATGCTGATACAGTTGTATGTGCTTATGGTCATATGTTTTCCTGTGTTTTCAGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGGTATTTTGTTCTTTGGTATTTGCATATTTGTCTATGCGACATCTTAGTCTTCTATTTGTTAATTCTAACATGCTAATGCCTTTCATATCCTCCCTCTTTTGTCTTCAATTTCAGCCGACCAATGGAGGAAGATGTAAGTTTCTTCAGTCTTTTGTGCTTTCGCTTTCAGTACTTTTATCCAATACATGTTGCCAAATGGTTCGACATTTTTCTTATGCGCAAGTATGTTTGAATCATGTCTTACTCTTGAGTCGTTATAAAAGCTTTTCATTGTATAATATCTTCGGCTCTTGTTCCTTTTCATTGACACAACTCTTTTGAGTTGGATGAAAATTTTATCCTTGTACTGAAAAATTATGATTTCTCTTTCTAATAATCATGATCCTGTAGACCAGCTAGTTCTTACCTCTGCTAATGCCCGTGAGGCAACTATTGAACTCTCTTTAAATTTATTAAAATTGGATAACATTTTAGCATGGTATTTTTTTTTTGTCTTTAGTTAAAGGTCAGCTTTATGTCAATTTTTAATTTTACTAAATTCTGCTGATTGAATGATATTTTGATATATTGGAGTTTGATGCTTGAAAACTTGATATATAAGTAATGTTTGGAAGTTATGATTTTTAGTTATCTATGTTAGAAACCCTGTGAAAAGTTCACATGGCTTTTGTTGTTTAGACTAGGAAGGTTGGATATTTGTAATAACTTAAAAAAAAAGGAAAAGATCTCAGTTTCTATGCCCCTTGGTATTATGTGAATAATGTTGTATTTTTTAGTCATTTATTTTTCCATCCCGAGTTTTCTGATGTGCTTTAGTTTTGGTTTAGTGTACAATATCTTGAATTTCTCTAGTAGAGAAATTCCTTGACAGTTGGTCTTCAAAATGGGTTTTTATTTTTTACTTACTATGTTGGAAATTCCTTGGTAGTTGGTCTTTAAAATGGTGTTTTATTTTTTAATTCTTTTAAAAAATATATTTGTTTCTGTAAAATGTGAAATTTCTGCTATCTTTTGGGTGCTATAGTTTGGCTGGCAAGAAACTGGATGATTTTTTAAGACGTGTTTTATACCTTTTGGAGTAAAATTGATGATCTTTAGATCCAGTGCCGTTTTTTCTTTCAACATTGTTTCTATGGTTGATTATTGTGATATTTTTCCATTCCCATTTGATGATTGTTACCAAGTTACTCTTTCGTAAGCTATTTATAAAATGGTTATATTTATAATTTTTTAAAAAGTGATAACTACGACATTTTCATGAAGCTCATTTCTTTTGATTTATAAATAAGTGTATTGGCTATATTTCTTTCAAGGAACCTTTTTTTAAAATCTTTCCAGGCCCCCTTCCCAGTTGTTGCTTTGGGGTTATGCTGCAAGATCTTTGGACTTCTTCAACTTTGTTCTGTTTATTTTTTTACTTGAAACTTCACTGAAGTGCTACTAGAACGTCATTAGGAATTACTTACTTTGAATCCTTTTGCAGACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTATGCTTTGTTTGTGTGTGTTAAAGAGTTGTGCCTTGTAATTTGCAGGTGAACCGTTTAGGTAAAAACCCTCATGTTTTGGACCCCCTCGACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTGAGGGCCTTTGATCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTGCTTGATGTGTGCTTACTCTTTTCCTTGCTTTGTATTGTAGACTCATGAGTTACGCATCTCATGTATAATTACTATGTCTAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTCCGCCATCTCATAATATGTTAAGTTTGAATCCTTGAGTTGACTCCATATGCCTGCCGATCTTATTTCTTGTCGTCCTTCCTGTGATAAACATCAAACTTTCAGTTGATAGCCTGACCTTCTGCCAAGTTTGGAGCTATCTTATCAGTTTGTAGTTCATTTTAATTTTTCTTCTTCTGCAAACCATTTCCCAGATACTGCAACTCTAGAAAGTGTATCTGTTTAGATATCAGAGAATATTTAGTAGAAATGCTATCTGTTTTTAACGTGTCTATTGATTAGAGACTTTGAGTGTCTTTGCAACATGGGACATTTATTTGTTCTGATCAGCAAGTAATATTATCATTCAGAACTATGAGGATCTTTTGGGCTAGGCAGGTATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTCTGTTCATGTGTACACACCAAGGAATCAAATTTTCATTGACATGTGAATAGTTTTCTGTGTTTATAAATCGAAGGGTCTGACAATCATAGTTGCTTA

mRNA sequence

ATGCACAAAACCGCGCCCTCGCCCTCTCCCTCTCCCCCTCCTTCTCCGATCTTCTTCGTTATTTATCGCCACTTCGCCGCCGACCTCGCCCTCGCCCTCGCCTTCTCCTTTGGTCTTCTCCGGCTCTGACTCATTCCAAGGACATTGGAGAAGATCTACCTCAAGTTACAAGATGAGACTAACAAGAATGAAGAAGAGGAATTCAACACTGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTGAGGGCCTTTGATCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAAGAATAGTCCGCCATCTCATAATATGTTAAGTTTGAATCCTTGAGTTGACTCCATATGCCTGCCGATCTTATTTCTTGTCGTCCTTCCTGTGATAAACATCAAACTTTCAGTTGATAGCCTGACCTTCTGCCAAGTTTGGAGCTATCTTATCAGTTTGTAGTTCATTTTAATTTTTCTTCTTCTGCAAACCATTTCCCAGATACTGCAACTCTAGAAAGTGTATCTGTTTAGATATCAGAGAATATTTAGTAGAAATGCTATCTGTTTTTAACGTGTCTATTGATTAGAGACTTTGAGTGTCTTTGCAACATGGGACATTTATTTGTTCTGATCAGCAAGTAATATTATCATTCAGAACTATGAGGATCTTTTGGGCTAGGCAGGTATGTGCTGTTCCTCGAGTCTTGGTCCTTGTTGCTTCTGTTCATGTGTACACACCAAGGAATCAAATTTTCATTGACATGTGAATAGTTTTCTGTGTTTATAAATCGAAGGGTCTGACAATCATAGTTGCTTA

Coding sequence (CDS)

ATGATGAGTGTTAAAAATAACACACAGGTACTCATAAATTGTCGCAACAATAAGAAGCTTTTGGGACGTGTGAGGGCCTTTGATCGGCATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAAACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGACAGATTCATCAGTAAGATGTTTCTGAGAGGAGACTCTGTCATCATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK

Homology

[Close]

BLAST of CmaCh04G007540 vs. Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh04G007540 vs. Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh04G007540 vs. Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 1


Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]

BLAST of CmaCh04G007540 vs. Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 1


Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDR
Sbjct: 34  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDR 93

Query: 63  FISKMFLRGDSVIIVLRNP 82
           FISKMFLRGDSVI+VLRNP
Sbjct: 94  FISKMFLRGDSVILVLRNP 112

[Close]

BLAST of CmaCh04G007540 vs. Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-35
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+P+NK
Sbjct: 24  MDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINK 83

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVI+VL+NP
Sbjct: 84  DRFISKMFLRGDSVILVLKNP 104

[Close]

BLAST of CmaCh04G007540 vs. TrEMBL
Match: C6T6A5_SOYBN (Uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  DRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh04G007540 vs. TrEMBL
Match: A0A0R0K0R3_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_05G240800 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
          MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60

Query: 61 DRFISKMFLRGDSVIIVLRNPK 83
          DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 DRFISKMFLRGDSVIIVLRNPK 82

[Close]

BLAST of CmaCh04G007540 vs. TrEMBL
Match: K7KRH4_SOYBN (Uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 41  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 100

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 101 DRFISKMFLRGDSVIIVLRNPK 122

[Close]

BLAST of CmaCh04G007540 vs. TrEMBL
Match: A0A0A0KUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 107 MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 166

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 167 DRFISKMFLRGDSVIIVLRNPK 188

[Close]

BLAST of CmaCh04G007540 vs. TrEMBL
Match: A0A0S3QWM2_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G011900 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 3.0e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  DRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh04G007540 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 163.7 bits (413), Expect = 4.8e-41
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 88  DRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of CmaCh04G007540 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 163.7 bits (413), Expect = 4.8e-41
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 88  DRFISKMFLRGDSVIIVLRNPK 109

[Close]

BLAST of CmaCh04G007540 vs. NCBI nr
Match: gi|950930093|ref|XP_014503527.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiata])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  DRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh04G007540 vs. NCBI nr
Match: gi|922338755|ref|XP_013447367.1| (small nuclear ribonucleoprotein [Medicago truncatula])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
          MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60

Query: 61 DRFISKMFLRGDSVIIVLRNPK 83
          DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61 DRFISKMFLRGDSVIIVLRNPK 82

[Close]

BLAST of CmaCh04G007540 vs. NCBI nr
Match: gi|449457536|ref|XP_004146504.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 26  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 85

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 86  DRFISKMFLRGDSVIIVLRNPK 107

[Close]

BLAST of CmaCh04G007540 vs. NCBI nr
Match: gi|224068340|ref|XP_002302713.1| (small nuclear ribonucleoprotein D2 [Populus trichocarpa])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 87  DRFISKMFLRGDSVIIVLRNPK 108

[Close]

BLAST of CmaCh04G007540 vs. NCBI nr
Match: gi|950946639|ref|XP_014494508.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiata])

HSP 1 Score: 168.7 bits (426), Expect = 4.2e-39
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 1


Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 28  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 87

Query: 61  DRFISKMFLRGDSVIIVLRNPK 83
           DRFISKMFLRGDSVIIVLRNPK
Sbjct: 88  DRFISKMFLRGDSVIIVLRNPK 109

The following BLAST results are available for this feature:

BLAST of CmaCh04G007540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SMD2_BOVIN	3.0e-37	91.14	Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1	[more]
SMD2_HUMAN	3.0e-37	91.14	Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1	[more]
SMD2_MOUSE	3.0e-37	91.14	Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1	[more]
SMD2_DROME	4.0e-37	91.14	Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD...	[more]
SMD2_DICDI	2.2e-35	87.65	Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=sn...	[more]

BLAST of CmaCh04G007540 vs. TrEMBL


Match Name	E-value	Identity	Description
C6T6A5_SOYBN	3.0e-39	100.00	Uncharacterized protein OS=Glycine max PE=2 SV=1	[more]
A0A0R0K0R3_SOYBN	3.0e-39	100.00	Uncharacterized protein OS=Glycine max GN=GLYMA_05G240800 PE=4 SV=1	[more]
K7KRH4_SOYBN	3.0e-39	100.00	Uncharacterized protein OS=Glycine max PE=4 SV=1	[more]
A0A0A0KUK4_CUCSA	3.0e-39	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1	[more]
A0A0S3QWM2_PHAAN	3.0e-39	100.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G011900 PE=...	[more]

BLAST of CmaCh04G007540 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G47640.1	4.8e-41	96.34	Small nuclear ribonucleoprotein family protein	[more]
AT3G62840.1	4.8e-41	96.34	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CmaCh04G007540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|950930093\|ref\|XP_014503527.1\|	4.2e-39	100.00	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiat...	[more]
gi\|922338755\|ref\|XP_013447367.1\|	4.2e-39	100.00	small nuclear ribonucleoprotein [Medicago truncatula]	[more]
gi\|449457536\|ref\|XP_004146504.1\|	4.2e-39	100.00	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus]	[more]
gi\|224068340\|ref\|XP_002302713.1\|	4.2e-39	100.00	small nuclear ribonucleoprotein D2 [Populus trichocarpa]	[more]
gi\|950946639\|ref\|XP_014494508.1\|	4.2e-39	100.00	PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Vigna radiata var. radiat...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	LSM_dom_euk/arc
IPR010920	LSM_dom_sf
IPR027248	Sm_D2

Vocabulary: **Biological Process**
Term	Definition
GO:0008380	RNA splicing

Vocabulary: **Cellular Component**
Term	Definition
GO:0030532	small nuclear ribonucleoprotein complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
cellular_component	GO:0030532	small nuclear ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G007540.1	CmaCh04G007540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 4..77 score: 2.5
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 1..79 score: 6.6
IPR010920	LSM domain	unknown	SSF50182	Sm-like ribonucleoproteins	coord: 2..80 score: 1.52
IPR027248	Small nuclear ribonucleoprotein Sm D2	PANTHER	PTHR12777	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2	coord: 1..82 score: 2.4
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 2..82 score: 1.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G007540	Cucsa.106550	Cucumber (Gy14) v1	cgycmaB0246
CmaCh04G007540	Cla014586	Watermelon (97103) v1	cmawmB677
CmaCh04G007540	Csa4G046730	Cucumber (Chinese Long) v2	cmacuB713
CmaCh04G007540	MELO3C016382	Melon (DHL92) v3.5.1	cmameB694
CmaCh04G007540	ClCG07G008500	Watermelon (Charleston Gray)	cmawcgB668
CmaCh04G007540	CSPI04G05510	Wild cucumber (PI 183967)	cmacpiB721
CmaCh04G007540	CmoCh04G008050	Cucurbita moschata (Rifu)	cmacmoB728
CmaCh04G007540	CmoCh16G006730	Cucurbita moschata (Rifu)	cmacmoB700
CmaCh04G007540	Lsi07G002570	Bottle gourd (USVL1VR-Ls)	cmalsiB698
CmaCh04G007540	Cp4.1LG14g01890	Cucurbita pepo (Zucchini)	cmacpeB714
CmaCh04G007540	Cp4.1LG01g07090	Cucurbita pepo (Zucchini)	cmacpeB731
CmaCh04G007540	MELO3C016382.2	Melon (DHL92) v3.6.1	cmamedB782
CmaCh04G007540	CsaV3_4G005660	Cucumber (Chinese Long) v3	cmacucB0847
CmaCh04G007540	Cla97C07G135540	Watermelon (97103) v2	cmawmbB774
CmaCh04G007540	Bhi01G001835	Wax gourd	cmawgoB0855
CmaCh04G007540	CsGy4G005390	Cucumber (Gy14) v2	cgybcmaB547
CmaCh04G007540	Carg05739	Silver-seed gourd	carcmaB1414
CmaCh04G007540	Carg14152	Silver-seed gourd	carcmaB1288

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmaCh04G007540	CmaCh16G006170	Cucurbita maxima (Rimu)	cmacmaB350

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G007540	Cucurbita pepo (Zucchini)	cmacpeB720
CmaCh04G007540	Cucurbita pepo (Zucchini)	cmacpeB741
CmaCh04G007540	Watermelon (97103) v2	cmawmbB712
CmaCh04G007540	Wax gourd	cmawgoB0846
CmaCh04G007540	Cucurbita maxima (Rimu)	cmacmaB546
CmaCh04G007540	Wild cucumber (PI 183967)	cmacpiB785
CmaCh04G007540	Melon (DHL92) v3.5.1	cmameB710
CmaCh04G007540	Watermelon (Charleston Gray)	cmawcgB639
CmaCh04G007540	Watermelon (97103) v1	cmawmB715