Carg05739 (gene) Silver-seed gourd

Overview
NameCarg05739
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
Descriptionsmall nuclear ribonucleoprotein Sm D2-like
LocationCucurbita_argyrosperma_scaffold_033 : 729712 .. 730218 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCTTTGTTTGTGCATGTTTAACAGTTGCGCCTTGTAATTCACAGGCAGAACTTTTCAGTTAAAAACTATTTTTATATGTGTTGGACCTTTTCGGCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTTTGTTTTACTGATGTTTACTTACTCTTTTTCTTGCTTTGTATAGACTCAAGAGTCACTTATCATATGTACTATTACTATGACCAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

mRNA sequence

TGTACTTACTTTGAATCCTCTGCAGACTAGCAAAAATGAGGAAGAGGAGTTCAACACCGGTCCACTTTCAGTTCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

Coding sequence (CDS)

ATGATGAGTGTTAAAAATAACACTCAGGTTCTTATTAATTGTCGCAACAATAAGAAGCTCTTGGGACGTGTACGGGCCTTCGACCGACATTGTAATATGGTTCTGGAAAATGTTAGAGAGATGTGGACTGAGGTACCAAAGACTGGGAAGGGCAAGAAAAAGGCTCAACCTGTTAACAAGGATAGATTCATCAGTAAGATGTTCCTGAGAGGAGACTCTGTCATTATTGTTCTTAGGAATCCC

Protein sequence

MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP
Homology
[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_002320342.1 (small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >XP_011033534.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Populus euphratica] >XP_011011216.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Populus euphratica] >XP_024450562.1 small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >ABK92681.1 unknown [Populus trichocarpa] >PNT04530.1 hypothetical protein POPTR_014G129100v3 [Populus trichocarpa] >PNT04531.1 hypothetical protein POPTR_014G129100v3 [Populus trichocarpa] >PNT50772.1 hypothetical protein POPTR_002G204300v3 [Populus trichocarpa] >PNT50773.1 hypothetical protein POPTR_002G204300v3 [Populus trichocarpa])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: NP_001241022.1 (uncharacterized protein LOC100793233 [Glycine max] >ACU17317.1 unknown [Glycine max])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_004146504.1 (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] >XP_008452073.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452074.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_008452075.1 PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis melo] >XP_022929177.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita moschata] >XP_022985082.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita maxima] >XP_023551877.1 small nuclear ribonucleoprotein Sm D2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 26  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 85

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 86  DRFISKMFLRGDSVIIVLRNP 106

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: XP_007131373.1 (hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris] >ESW03367.1 hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 28  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. NCBI nr
Match: AET05464.2 (small nuclear ribonucleoprotein [Medicago truncatula])

HSP 1 Score: 166.8 bits (421), Expect = 3.1e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 43  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 102

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 103 DRFISKMFLRGDSVIIVLRNP 123

[Close]
BLAST of Carg05739 vs. TAIR10
Match: AT2G47640.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. TAIR10
Match: AT3G62840.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 161.8 bits (408), Expect = 1.8e-40
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA PVN+
Sbjct: 28  MMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKALPVNR 87

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 88  DRFISKMFLRGDSVIIVLRNP 108

[Close]
BLAST of Carg05739 vs. TAIR10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 44.7 bits (104), Expect = 3.2e-05
Identity = 24/69 (34.78%), Postives = 42/69 (60.87%), Query Frame = 0 

Query: 9  QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 68
          ++ +  R++++L G++ AFD+H NM+L +V E  T V    +  ++     K R I  +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTK-RTIEFLF 82

Query: 69 LRGDSVIIV 78
          +RGD VI+V
Sbjct: 83 VRGDGVILV 90

[Close]
BLAST of Carg05739 vs. TAIR10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 44.3 bits (103), Expect = 4.2e-05
Identity = 22/69 (31.88%), Postives = 43/69 (62.32%), Query Frame = 0 

Query: 9  QVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMF 68
          ++ +  R++++L G++ AFD+H NM+L +V E+ T +    +  ++     K R +  +F
Sbjct: 23 RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTK-RTVPFLF 82

Query: 69 LRGDSVIIV 78
          +RGD VI+V
Sbjct: 83 VRGDGVILV 90

[Close]
BLAST of Carg05739 vs. TAIR10
Match: AT4G20440.1 (small nuclear ribonucleoprotein associated protein B)

HSP 1 Score: 40.8 bits (94), Expect = 4.6e-04
Identity = 23/69 (33.33%), Postives = 38/69 (55.07%), Query Frame = 0 

Query: 7  NTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISK 66
          N ++ +  ++ ++L+G+  AFDRH N+VL +  E     P   KGKK  +     R +  
Sbjct: 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPP--AKGKKINEEREDRRTLGL 73

Query: 67 MFLRGDSVI 76
          + LRG+ VI
Sbjct: 74 VLLRGEEVI 80

[Close]
BLAST of Carg05739 vs. Swiss-Prot
Match: sp|Q3SZF8|SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. Swiss-Prot
Match: sp|P62316|SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. Swiss-Prot
Match: sp|P62317|SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 3.0e-37
Identity = 72/79 (91.14%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTEVPK+GKGKKK++PVNKDR
Sbjct: 35  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDR 94

Query: 63  FISKMFLRGDSVIIVLRNP 82
           +ISKMFLRGDSVI+VLRNP
Sbjct: 95  YISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Carg05739 vs. Swiss-Prot
Match: sp|Q9VI10|SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=7227 GN=SmD2 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.0e-37
Identity = 72/79 (91.14%), Postives = 78/79 (98.73%), Query Frame = 0 

Query: 3   SVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDR 62
           SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+P+TGKGKKK +PVNKDR
Sbjct: 34  SVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDR 93

Query: 63  FISKMFLRGDSVIIVLRNP 82
           FISKMFLRGDSVI+VLRNP
Sbjct: 94  FISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Carg05739 vs. Swiss-Prot
Match: sp|Q54NC5|SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44689 GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 2.2e-35
Identity = 71/81 (87.65%), Postives = 77/81 (95.06%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           M SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTEVPKT KGKKKA+P+NK
Sbjct: 24  MDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINK 83

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVI+VL+NP
Sbjct: 84  DRFISKMFLRGDSVILVLKNP 104

[Close]
BLAST of Carg05739 vs. TrEMBL
Match: tr|A0A1S2YDS1|A0A1S2YDS1_CICAR (small nuclear ribonucleoprotein Sm D2-like OS=Cicer arietinum OX=3827 GN=LOC101515130 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. TrEMBL
Match: tr|A0A1U8APN2|A0A1U8APN2_NELNU (small nuclear ribonucleoprotein Sm D2-like isoform X1 OS=Nelumbo nucifera OX=4432 GN=LOC104606181 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 29  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 88

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 89  DRFISKMFLRGDSVIIVLRNP 109

[Close]
BLAST of Carg05739 vs. TrEMBL
Match: tr|A9P8H8|A9P8H8_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G204300v3 PE=2 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

[Close]
BLAST of Carg05739 vs. TrEMBL
Match: tr|A0A0R0K0R3|A0A0R0K0R3_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
          MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 1  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60

Query: 61 DRFISKMFLRGDSVIIVLRNP 82
          DRFISKMFLRGDSVIIVLRNP
Sbjct: 61 DRFISKMFLRGDSVIIVLRNP 81

[Close]
BLAST of Carg05739 vs. TrEMBL
Match: tr|I1K5I1|I1K5I1_SOYBN (Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 2.0e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1   MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 60
           MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK
Sbjct: 27  MMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNK 86

Query: 61  DRFISKMFLRGDSVIIVLRNP 82
           DRFISKMFLRGDSVIIVLRNP
Sbjct: 87  DRFISKMFLRGDSVIIVLRNP 107

The following BLAST results are available for this feature:
BLAST of Carg05739 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_002320342.13.1e-38100.00small nuclear ribonucleoprotein Sm D2 [Populus trichocarpa] >XP_011033534.1 PRED... [more]
NP_001241022.13.1e-38100.00uncharacterized protein LOC100793233 [Glycine max] >ACU17317.1 unknown [Glycine ... [more]
XP_004146504.13.1e-38100.00PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus] >XP_0084... [more]
XP_007131373.13.1e-38100.00hypothetical protein PHAVU_011G008300g [Phaseolus vulgaris] >ESW03367.1 hypothet... [more]
AET05464.23.1e-38100.00small nuclear ribonucleoprotein [Medicago truncatula][more]
BLAST of Carg05739 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47640.11.8e-4096.30Small nuclear ribonucleoprotein family protein[more]
AT3G62840.11.8e-4096.30Small nuclear ribonucleoprotein family protein[more]
AT1G76860.13.2e-0534.78Small nuclear ribonucleoprotein family protein[more]
AT1G21190.14.2e-0531.88Small nuclear ribonucleoprotein family protein[more]
AT4G20440.14.6e-0433.33small nuclear ribonucleoprotein associated protein B[more]
BLAST of Carg05739 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q3SZF8|SMD2_BOVIN3.0e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus OX=9913 GN=SNRPD2 PE=3 SV=1[more]
sp|P62316|SMD2_HUMAN3.0e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens OX=9606 GN=SNRPD2 PE=1 SV=... [more]
sp|P62317|SMD2_MOUSE3.0e-3791.14Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus OX=10090 GN=Snrpd2 PE=1 SV... [more]
sp|Q9VI10|SMD2_DROME4.0e-3791.14Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster OX=722... [more]
sp|Q54NC5|SMD2_DICDI2.2e-3587.65Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum OX=44... [more]
BLAST of Carg05739 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S2YDS1|A0A1S2YDS1_CICAR2.0e-38100.00small nuclear ribonucleoprotein Sm D2-like OS=Cicer arietinum OX=3827 GN=LOC1015... [more]
tr|A0A1U8APN2|A0A1U8APN2_NELNU2.0e-38100.00small nuclear ribonucleoprotein Sm D2-like isoform X1 OS=Nelumbo nucifera OX=443... [more]
tr|A9P8H8|A9P8H8_POPTR2.0e-38100.00Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_002G204300v3 PE=... [more]
tr|A0A0R0K0R3|A0A0R0K0R3_SOYBN2.0e-38100.00Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1[more]
tr|I1K5I1|I1K5I1_SOYBN2.0e-38100.00Uncharacterized protein OS=Glycine max OX=3847 GN=100792526 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR027248Sm_D2
IPR001163LSM_dom_euk/arc
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg05739-RACarg05739-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 1..79
e-value: 6.6E-18
score: 75.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 4..77
e-value: 2.4E-19
score: 68.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 1..81
e-value: 4.0E-35
score: 121.4
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 1..81
IPR027248Small nuclear ribonucleoprotein Sm D2CDDcd01720Sm_D2coord: 1..81
e-value: 3.95592E-52
score: 159.033
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 2..79

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg05739Cla014586Watermelon (97103) v1carwmB1018
Carg05739Csa4G046730Cucumber (Chinese Long) v2carcuB1033
Carg05739MELO3C016382Melon (DHL92) v3.5.1carmeB0992
Carg05739ClCG07G008500Watermelon (Charleston Gray)carwcgB0999
Carg05739CSPI04G05510Wild cucumber (PI 183967)carcpiB1057
Carg05739Cucsa.106550Cucumber (Gy14) v1carcgyB1133
Carg05739CmaCh04G007540Cucurbita maxima (Rimu)carcmaB1414
Carg05739CmaCh16G006170Cucurbita maxima (Rimu)carcmaB1409
Carg05739CmoCh16G006730Cucurbita moschata (Rifu)carcmoB1366
Carg05739Cp4.1LG14g01890Cucurbita pepo (Zucchini)carcpeB1414
Carg05739Cp4.1LG01g07090Cucurbita pepo (Zucchini)carcpeB1418
Carg05739CsGy4G005390Cucumber (Gy14) v2carcgybB1005
Carg05739MELO3C016382.2Melon (DHL92) v3.6.1carmedB1004
Carg05739CsaV3_4G005660Cucumber (Chinese Long) v3carcucB1063
Carg05739Cla97C07G135540Watermelon (97103) v2carwmbB1084
Carg05739Bhi01G001835Wax gourdcarwgoB1194
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg05739Carg14152Silver-seed gourdcarcarB646
The following block(s) are covering this gene:
GeneOrganismBlock
Carg05739Cucurbita maxima (Rimu)carcmaB1413
Carg05739Cucurbita moschata (Rifu)carcmoB1370
Carg05739Cucurbita moschata (Rifu)carcmoB1371
Carg05739Cucurbita pepo (Zucchini)carcpeB1412
Carg05739Cucurbita pepo (Zucchini)carcpeB1413
Carg05739Cucurbita pepo (Zucchini)carcpeB1419
Carg05739Wild cucumber (PI 183967)carcpiB1058
Carg05739Cucumber (Chinese Long) v2carcuB1034
Carg05739Cucumber (Chinese Long) v3carcucB1068
Carg05739Bottle gourd (USVL1VR-Ls)carlsiB930
Carg05739Bottle gourd (USVL1VR-Ls)carlsiB935
Carg05739Melon (DHL92) v3.5.1carmeB0994
Carg05739Melon (DHL92) v3.6.1carmedB1006
Carg05739Watermelon (Charleston Gray)carwcgB0993
Carg05739Watermelon (97103) v1carwmB1021
Carg05739Watermelon (97103) v2carwmbB1072
Carg05739Wax gourdcarwgoB1193
Carg05739Silver-seed gourdcarcarB432
Carg05739Cucumber (Gy14) v2carcgybB1006