Csa4G046730 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa4G046730
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSmall nuclear ribonucleoprotein-like protein; contains IPR010920 (Like-Sm (LSM) domain), IPR027248 (Small nuclear ribonucleoprotein Sm D2)
LocationChr4 : 3656465 .. 3659882 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCGAATGAGGTGAGGAATCCTCGAAATACAAAGGAAACATAAGAGAGGGAGTGAGAATTATTTTTTCTCCGTTAATATTTCGGGCTCGAGGATGAGAAATACATTCCCGACCTCAACCCGTCCAAAAGAAAAAAAAATACTTTTATATATATATAAAGTAGAGATTATTTCTTGGTGGAGAACCCTATTCCCATAGAATAACTAAGAAATCTCGCACCAATTTTTTAGGGATGGGGAATGGGATAGGGGGCGGTGAGCTCTGTTCTTGCTCGGTGAACATCTTTAGGTTCAATTCCTTAGCTTTAGTCGTACTTAATAATATATTTATATATAAAAAAAAACCTTATTTTTACAAAATAACCAAATACATCAATTTTTTATTTTTTAAAAAATATATATTTGATTAATATTATTACTAAAAGAAAATGAATAGAGTGAGGGTCATCTCATAAAAGTTGTAATTTAATTGGTATGTTTCAACCCAAAACGCAAGAAAACCTCGCGTTTAGGGTTTTTTCATCCTTTTTTTTTCTTTTTTGAAAAAGAGCAATATGAACCTTAGTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGGTAAGTGTTCTCTCTCTTTCTCTCTCCATCTCACTCTCCGTTTCGTTTTACAGCTACTCTTTCTTTCTCTCTTCGTTTAGTTTCACTGTTTCCTCCTACTGAATTTTTTATGCAGTTTCCCCCATTACTTTGTTCTTAAGATATTGCATCTGACTTATATGTTATTTTCTAAGATATTGCATCTCTTCTCTCGCTGTGAATTTTTCTTGAATAGTTTAACCTAGACTTTGGTCTCTCTGGAGCATGATGTTCTTTAGAGTTTAGGGTAACCTTAGGAACATACTGTTTATGAAATTATGCTGGTGCGGTTTTATTTACTGTCATTCTTTCTATGTGCTTATGGTCGTATGTTTGTCATGTAATTGCAGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGGTATTGTGTTTTTCGGTATTTGTATACTTTGTTTGTTCGCACATCTTGGTCTTTTTTGTTCTTTTACTAAATTCTTTACATACTAATGGGTTTCGTGTCCTCTTTTTTGTCTTCAATTGCAGCCGACCGATGGAGGAAGATGTAAGTTCCTTCAGTCTGTTATGCTTTCAATTTTAGTACTTTCATCCAATATATGTTGCCTTTGCCTAATTGGTCTAGCCTCTATATTAGCACAAGTGTTAAAGAATCATGACTTGCTCTCGAGTCATTACCAACGCTTTTCATTGTATAATCTCTGCGGCTTCTTTTTCTTTTCGTCTACACAACTCTTTTAAGTTGGAAGAAAATGTTGTCCTTCGTATCGAAAAATCATGATATTTTTTTCCACAACTGTTCGACTAGTCCACATGAAGCAACTATTAGACTCTTTCAATTGAAGTTATTAATTTTTGGGTAAGGTTTTGTCATGTTTTTTTAATTAGTCTATTTATTTTTTAAACCTTTAGTTAAAAAGGTCGGCTTCATGTCAAATTTAAATATAACCAAATTCTACTGGTTGAATGATATTTTTATATATTGAGAGTTGATGCTCATAAACCATTTGACAAGTTCAACTGGCCTTTGTGTTTGGACCAGGAAGGCCAGATATTTTTTATGTCTTCAAAAAGAAATTTTCTTATTTTCTATCATTCACCTGGCTACCGTGAATGATGTTTCTTGAACCTCTAGTAGAGCAATACCAGTTCTATGTTGGGAATTCGTTGGTAGTTGGTCTTTTAAAAGGGTTTAATTATTAGCATTGTAATTTCTTTCTCAATAAAAATCTATTTGTTTCTGTTAAATGTGAAATTTTTGCTATCTTTCAGGTGCTATGATTAGCAAGAAATGATATGATTTCTTGAGACTAGTTTTGTACCTTTTTAAGTGAAACTGATGATCTTTTGATTCAGTTCTGTTTTCTCTTTCAACTTTGTTTCTATAGTTGGTTAATGTATTTTTTTCCCTATCCATTTGATGGTTGTTTACCAACTTCTTACACTTTTGCATTCTACTTATGAAAAAATGTTTAGTTTTTAATTAAAAAAAAATGAACTGTGACTTTTCCATGAAACTCATTTCAATAAGTAAATTACCATAAAGGTTTCATTTTTTCTTTCTTTCTAGTGTTAGCTTAATGTTCTCTCTCTAGAGTTTTTTTTTTTCTTGGTTTAATCTCTCGAGTCACCCTTCCTTAGTTTGTTCCTGTCATACTGCAAAATCCTTGGACTTGTGTTCTATTTTTTTTTTTGACTTCCAACTCTACTGAAGTGTTTCTACAAACACAATTACGAATTACTTGCTTTGAACTCTCTGCAGACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTATGCATTTGTTTGTGTGTTTAACAGTTCCACTTGTAAATCAAGGCATAACTGTTCAAGTGAAAATGATGTTTATATGTTTTGGACCTTCTTGACAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTTTGTCTTATTGATGTGTGCTTACTATTTACTCTTTTTCTTGCTTAGACTCAAGTCATGGATCTTATGTTGTATTACTATGACCAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAAGAAGAGTTGATCATCTCATCATATGTTCGGTTTGGATTCTCAAGTCAACTCCATTTGTCTACCAATCTTTTTTGCTTGTCATCAAACTTTCATTTGATAGCCTGACGGTCTGCTAAGCTTGGGGCTATCTATATCAGTTTGTAGTTCGTTTTGATTTTTCATTCCCGCAAACCATTTACCAAATATTGTAACTCTAGAAAGTGTATTTGTTTAGGTATGGGAGATTATTAGTAGAAATGCCATATGTTTTTAACGTGTGTATTGAATAGAGTTTATCTTTGCAACTGTTGAGACGTTATCTGTTTTGATCACAAGTGGATATTATCATTCGTAATTACGAGGATCTTTTGGGCATGGTAGATGATGTGCTGTTTCTCTAGTCTTGTTCCTTGTTGCATATGTTCATGTGATACCAAGGAATCAAATTTTCATCGGGATGTCAGTGTTTGTTTGTTGTGTTCATAAATCTTAGGG

mRNA sequence

ATGGGGAATGGGATAGGGGGCGGTGAGCTCTGTTCTTGCTCGGTGAACATCTTTAGGTTCAATTCCTTAGCTTTAGTCTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Coding sequence (CDS)

ATGGGGAATGGGATAGGGGGCGGTGAGCTCTGTTCTTGCTCGGTGAACATCTTTAGGTTCAATTCCTTAGCTTTAGTCTTTTTCCACGCGCGAGCCATTTCTCCTGCTCATCTTCTCCTTCGATCTTCTTCTTTATTCTTCGCCACTTCGCCGCCCTCCTCTCCCTTTCCTTCACCTTCACTCTTCTTCTCTCCCGCCGCCTCACTCCAAGGACATTGCCCAGGATCTACTTCCACTTACAACATGAGCCGACCGATGGAGGAAGATACTAGCAAGAATGAGGAAGAGGAGTTCAATACTGGTCCACTTTCCGTGCTCATGATGAGTGTTAAAAATAACACTCAGGTTCTCATAAATTGCCGCAATAATAAGAAGCTTTTGGGACGTGTAAGGGCCTTTGACCGGCATTGTAATATGGTTCTGGAAAACGTTAGAGAGATGTGGACTGAGGTACCTAAAACTGGGAAGGGCAAGAAAAAGGCTCAGCCTGTTAACAAGGACAGATTTATCAGCAAGATGTTCCTGAGAGGAGACTCGGTCATTATTGTTCTTAGGAATCCCAAGTAA

Protein sequence

MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPSLFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK*
Homology
[Close]
BLAST of Csa4G046730 vs. Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.2e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 88  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 147
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 148 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 188
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csa4G046730 vs. Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.2e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 88  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 147
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 148 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 188
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csa4G046730 vs. Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 8.2e-46
Identity = 87/100 (87.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 88  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 147
           E+  K EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 148 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 188
           WTEVPK+GKGKKK++PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct: 74  WTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

[Close]
BLAST of Csa4G046730 vs. Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD2 PE=1 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 1.8e-45
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1 

Query: 88  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 147
           E+ ++ EEEEFNTGPLSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 13  EELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 72

Query: 148 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 188
           WTE+P+TGKGKKK +PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct: 73  WTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

[Close]
BLAST of Csa4G046730 vs. Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.2e-41
Identity = 81/100 (81.00%), Postives = 89/100 (89.00%), Query Frame = 1 

Query: 88  EDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREM 147
           E+ +  E+EEFN GPLS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EM
Sbjct: 14  EELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEM 73

Query: 148 WTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNP 188
           WTEVPKTGKGKKKA+ V KDRFISKMFLRGDSVI+V++NP
Sbjct: 74  WTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113

[Close]
BLAST of Csa4G046730 vs. TrEMBL
Match: A0A0A0KUK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 1.8e-103
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 

Query: 1   MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS 60
           MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS
Sbjct: 1   MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS 60

Query: 61  LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC 120
           LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC
Sbjct: 61  LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC 120

Query: 121 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV 180
           RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Sbjct: 121 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV 180

Query: 181 IIVLRNPK 189
           IIVLRNPK
Sbjct: 181 IIVLRNPK 188

[Close]
BLAST of Csa4G046730 vs. TrEMBL
Match: A0A0D2V8E2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G029800 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 8.3e-53
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. TrEMBL
Match: A0A0B0M8C5_GOSAR (Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_02167 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTPKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. TrEMBL
Match: A0A0B0PTS4_GOSAR (Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_13093 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. TrEMBL
Match: A0A0D2UD29_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G328400 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 105/107 (98.13%), Postives = 105/107 (98.13%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDT KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTVKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. TAIR10
Match: AT2G47640.1 (AT2G47640.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.4e-53
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 82  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 141
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 142 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of Csa4G046730 vs. TAIR10
Match: AT3G62840.1 (AT3G62840.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 204.1 bits (518), Expect = 7.4e-53
Identity = 101/109 (92.66%), Postives = 103/109 (94.50%), Query Frame = 1 

Query: 82  MSRPMEEDTS--KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNM 141
           MS+PMEEDT+  K EEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNM
Sbjct: 1   MSKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNM 60

Query: 142 VLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           VLENVREMWTEVPKTGKGKKKA PVN+DRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  VLENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIVLRNPK 109

[Close]
BLAST of Csa4G046730 vs. TAIR10
Match: AT1G76860.1 (AT1G76860.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 30/90 (33.33%), Postives = 51/90 (56.67%), Query Frame = 1 

Query: 94  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 153
           EEE     PL ++ +S+  + ++ +  R++++L G++ AFD+H NM+L +V E  T V  
Sbjct: 4   EEEATVREPLDLIRLSL--DERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEI 63

Query: 154 TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 184
             +  ++     K R I  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTIEFLFVRGDGVILV 90

[Close]
BLAST of Csa4G046730 vs. TAIR10
Match: AT1G21190.1 (AT1G21190.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.3e-06
Identity = 27/90 (30.00%), Postives = 52/90 (57.78%), Query Frame = 1 

Query: 94  EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTEVPK 153
           EE+     PL ++ +S++   ++ +  R++++L G++ AFD+H NM+L +V E+ T +  
Sbjct: 4   EEDATVREPLDLIRLSIEE--RIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEI 63

Query: 154 TGKGKKKAQPVNKDRFISKMFLRGDSVIIV 184
             +  ++     K R +  +F+RGD VI+V
Sbjct: 64  DDETYEEIVRTTK-RTVPFLFVRGDGVILV 90

[Close]
BLAST of Csa4G046730 vs. NCBI nr
Match: gi|700198152|gb|KGN53310.1| (hypothetical protein Csa_4G046730 [Cucumis sativus])

HSP 1 Score: 383.3 bits (983), Expect = 2.5e-103
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 1 

Query: 1   MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS 60
           MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS
Sbjct: 1   MGNGIGGGELCSCSVNIFRFNSLALVFFHARAISPAHLLLRSSSLFFATSPPSSPFPSPS 60

Query: 61  LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC 120
           LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC
Sbjct: 61  LFFSPAASLQGHCPGSTSTYNMSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINC 120

Query: 121 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV 180
           RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV
Sbjct: 121 RNNKKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSV 180

Query: 181 IIVLRNPK 189
           IIVLRNPK
Sbjct: 181 IIVLRNPK 188

[Close]
BLAST of Csa4G046730 vs. NCBI nr
Match: gi|449457536|ref|XP_004146504.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 8.2e-54
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. NCBI nr
Match: gi|1012100367|ref|XP_015957200.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis])

HSP 1 Score: 216.5 bits (550), Expect = 4.1e-53
Identity = 106/107 (99.07%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDTSK EEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTSKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. NCBI nr
Match: gi|823261734|ref|XP_012463603.1| (PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Gossypium raimondii])

HSP 1 Score: 214.9 bits (546), Expect = 1.2e-52
Identity = 105/107 (98.13%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEEDT+KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDTTKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKA PVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNPK 107

[Close]
BLAST of Csa4G046730 vs. NCBI nr
Match: gi|645259330|ref|XP_008235310.1| (PREDICTED: probable small nuclear ribonucleoprotein Sm D2 [Prunus mume])

HSP 1 Score: 214.5 bits (545), Expect = 1.6e-52
Identity = 104/107 (97.20%), Postives = 106/107 (99.07%), Query Frame = 1 

Query: 82  MSRPMEEDTSKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVL 141
           MSRPMEED +KNEEEEFNTGPLSVLMMSVKNNTQVLINCRNN+KLLGRVRAFDRHCNMVL
Sbjct: 1   MSRPMEEDVAKNEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVL 60

Query: 142 ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 189
           ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK
Sbjct: 61  ENVREMWTEVPKTGKGKKKAQPVNKDRFISKMFLRGDSVIIVLRNPK 107

The following BLAST results are available for this feature:
BLAST of Csa4G046730 vs. Swiss-Prot
Match NameE-valueIdentityDescription
SMD2_BOVIN8.2e-4687.00Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1[more]
SMD2_HUMAN8.2e-4687.00Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1[more]
SMD2_MOUSE8.2e-4687.00Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=1 SV=1[more]
SMD2_DROME1.8e-4586.00Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=SmD... [more]
SMD2_CAEEL1.2e-4181.00Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-... [more]
BLAST of Csa4G046730 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUK4_CUCSA1.8e-103100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046730 PE=4 SV=1[more]
A0A0D2V8E2_GOSRA8.3e-5398.13Uncharacterized protein OS=Gossypium raimondii GN=B456_013G029800 PE=4 SV=1[more]
A0A0B0M8C5_GOSAR1.4e-5298.13Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_021... [more]
A0A0B0PTS4_GOSAR1.8e-5298.13Putative small nuclear ribonucleoprotein Sm D2 OS=Gossypium arboreum GN=F383_130... [more]
A0A0D2UD29_GOSRA1.8e-5298.13Uncharacterized protein OS=Gossypium raimondii GN=B456_009G328400 PE=4 SV=1[more]
BLAST of Csa4G046730 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47640.17.4e-5392.66 Small nuclear ribonucleoprotein family protein[more]
AT3G62840.17.4e-5392.66 Small nuclear ribonucleoprotein family protein[more]
AT1G76860.11.8e-0633.33 Small nuclear ribonucleoprotein family protein[more]
AT1G21190.12.3e-0630.00 Small nuclear ribonucleoprotein family protein[more]
BLAST of Csa4G046730 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700198152|gb|KGN53310.1|2.5e-103100.00hypothetical protein Csa_4G046730 [Cucumis sativus][more]
gi|449457536|ref|XP_004146504.1|8.2e-54100.00PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Cucumis sativus][more]
gi|1012100367|ref|XP_015957200.1|4.1e-5399.07PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Arachis duranensis][more]
gi|823261734|ref|XP_012463603.1|1.2e-5298.13PREDICTED: small nuclear ribonucleoprotein Sm D2-like [Gossypium raimondii][more]
gi|645259330|ref|XP_008235310.1|1.6e-5297.20PREDICTED: probable small nuclear ribonucleoprotein Sm D2 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027248Sm_D2
Vocabulary: Biological Process
TermDefinition
GO:0008380RNA splicing
Vocabulary: Cellular Component
TermDefinition
GO:0030532small nuclear ribonucleoprotein complex
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008380 RNA splicing
cellular_component GO:0030532 small nuclear ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU097333cucumber EST collection version 3.0transcribed_cluster
CU143096cucumber EST collection version 3.0transcribed_cluster
CU172403cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa4G046730.1Csa4G046730.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU097333CU097333transcribed_cluster
CU172403CU172403transcribed_cluster
CU143096CU143096transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 109..183
score: 2.6
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 106..185
score: 5.1
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 101..186
score: 5.46
IPR027248Small nuclear ribonucleoprotein Sm D2PANTHERPTHR12777SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2coord: 85..188
score: 5.7
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 100..188
score: 3.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa4G046730Cla014586Watermelon (97103) v1cuwmB310
Csa4G046730MELO3C016382Melon (DHL92) v3.5.1cumeB312
Csa4G046730ClCG07G008500Watermelon (Charleston Gray)cuwcgB325
Csa4G046730MELO3C016382.2Melon (DHL92) v3.6.1cumedB297
Csa4G046730Cla97C07G135540Watermelon (97103) v2cuwmbB322
Csa4G046730Bhi01G001835Wax gourdcuwgoB367
Csa4G046730CSPI04G05510Wild cucumber (PI 183967)cpicuB182
Csa4G046730Cucsa.106550Cucumber (Gy14) v1cgycuB129
Csa4G046730CmaCh04G007540Cucurbita maxima (Rimu)cmacuB713
Csa4G046730CmaCh16G006170Cucurbita maxima (Rimu)cmacuB337
Csa4G046730CmoCh16G006730Cucurbita moschata (Rifu)cmocuB325
Csa4G046730Cp4.1LG14g01890Cucurbita pepo (Zucchini)cpecuB221
Csa4G046730Cp4.1LG01g07090Cucurbita pepo (Zucchini)cpecuB400
Csa4G046730CsGy4G005390Cucumber (Gy14) v2cgybcuB165
Csa4G046730Carg05739Silver-seed gourdcarcuB1033
Csa4G046730Carg14152Silver-seed gourdcarcuB0958
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa4G046730Melon (DHL92) v3.6.1cumedB324
Csa4G046730Silver-seed gourdcarcuB0439
Csa4G046730Watermelon (97103) v2cuwmbB268
Csa4G046730Watermelon (97103) v2cuwmbB308
Csa4G046730Wax gourdcuwgoB376
Csa4G046730Wax gourdcuwgoB425
Csa4G046730Cucumber (Chinese Long) v2cucuB094
Csa4G046730Cucumber (Chinese Long) v2cucuB146
Csa4G046730Cucumber (Gy14) v1cgycuB479
Csa4G046730Cucurbita maxima (Rimu)cmacuB667
Csa4G046730Cucurbita moschata (Rifu)cmocuB655
Csa4G046730Cucurbita moschata (Rifu)cmocuB705
Csa4G046730Melon (DHL92) v3.5.1cumeB335
Csa4G046730Watermelon (Charleston Gray)cuwcgB288
Csa4G046730Watermelon (Charleston Gray)cuwcgB312
Csa4G046730Watermelon (97103) v1cuwmB322
Csa4G046730Watermelon (97103) v1cuwmB331
Csa4G046730Cucurbita pepo (Zucchini)cpecuB083
Csa4G046730Bottle gourd (USVL1VR-Ls)culsiB253
Csa4G046730Bottle gourd (USVL1VR-Ls)culsiB297
Csa4G046730Bottle gourd (USVL1VR-Ls)culsiB303
Csa4G046730Cucumber (Gy14) v2cgybcuB272