Cucsa.044890 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.044890
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING/U-box superfamily protein
Location	scaffold00542 : 1034127 .. 1035960 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGTCTACGTTTTGAACTTTACTAACAAAAAAAAACAAATGAAAGATCAATTATATTATTTGGAGCAATATTGAATTGGTGGATACACGAACCTGAGCTCCGACGAGCCGGCCTTAAATGGCCGTTGACTTAAACAGCCGGCGAAGGGATAGATATCTCCTTCCAACAAAAAAACAAACAAGAAAACCATAAAAAGAAAACGCATTAACACAATCCTTCTTACATTAAGTTGATTTTCTAAATTAATTAATAAATTTCAACTAACTATATGTATTGCAATTATTTAGCACTCCAATGTGTGGTGCTGCATTTCCCAAAGAAAAGAAAATTGAAGAGTCTCTGTAAAGTGTAAACTCCCTCCACTTCTTCATTGTCATTCCTTTGTCTTCTTCTTCTTCTTCTTCTGTTCTCTCTTAATTGCTTAATTAATTTTGGCGTCCACTAAACTTGCATTTAAGACCCTCACGACTCTCGTATTTTTGTTCTTGGGGCCTGGTTTTTTTCGAATTTCGTCCCCTTATGGGGCTCCGAGAATAATTAAGAACACAGAGGTGAGTTTCATCAAAATCTTTCATCAAACTCACGAGATCTCCATGGCCATGGCTAAAGGTAATCCATCCTAATCCTAACTATTTGCATTTCCCCTCAACGGTTTAAATTCATTTTCAAGTTTTACCCATTTTCTTCACAAAATTTTTGTTTCGAGGATCGGAAAAATGAGTCTTCTCAGTGTCATCTTACAGGAAGCCGCCAGGCGAGAAAGAGAGGCTAGGACCATTTGGGGATTTCTTACCGATCAAATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGAAGGAACCATGCTAAGTAACGATGAGGATGAGAACAGACGATTGTTGGTGACGGAAAGAGGTTAGTGGTTTTGCCTCAAGATTCGCGACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATATTGGTGACATGTGGATGCGCTGCGGGTGAGCAAACTTTTTCACGTCCAATAATAAAGTTTAATAGATAAATTAATATTTTCGATGTAACTCATATAATTTCAAACTTTTTATACAATGGGATTGAGAAACACTTCTCTTTCTTTCTTTCTTTTTATCCAAAGTTTTGTACATTTTGATTTCTTTTGGCTTGTAATTTTGTATTTTTCCTGCCACTAAAGTTTACGTTTTAAACTTCTTTTCTTATAAAATGGTGA

mRNA sequence

AAAACGTCTACGTTTTGAACTTTACTAACAAAAAAAAACAAATGAAAGATCAATTATATTATTTGGAGCAATATTGAATTGGTGGATACACGAACCTGAGCTCCGACGAGCCGGCCTTAAATGGCCGTTGACTTAAACAGCCGGCGAAGGGATAGATATCTCCTTCCAACAAAAAAACAAACAAGAAAACCATAAAAAGAAAACGCATTAACACAATCCTTCTTACATTAAGTTGATTTTCTAAATTAATTAATAAATTTCAACTAACTATATGTATTGCAATTATTTAGCACTCCAATGTGTGGTGCTGCATTTCCCAAAGAAAAGAAAATTGAAGAGTCTCTGTAAAGTGTAAACTCCCTCCACTTCTTCATTGTCATTCCTTTGtcttcttcttcttcttcttctGTTCTCTCTTAATTGCTTAATTAATTTTGGCGTCCACTAAACTTGCATTTAAGACCCTCACGACTCTCGTATTTTTGTTCTTGGGGCCTGGTTTTTTTCGAATTTCGTCCCCTTATGGGGCTCCGAGAATAATTAAGAACACAGAGGTGAGTTTCATCAAAATCTTTCATCAAACTCACGAGATCTCCATGGCCATGGCTAAAGGAAGCCGCCAGGCGAGAAAGAGAGGCTAGGACCATTTGGGGATTTCTTACCGATCAAATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGAAGGAACCATGCTAAGTAACGATGAGGATGAGAACAGACGATTGTTGGTGACGGAAAGAGGTTAGTGGTTTTGCCTCAAGATTCGCGACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATATTGGTGACATGTGGATGCGCTGCGGGTGAGCAAACTTTTTCACGTCCAATAATAAAGTTTAATAGATAAATTAATATTTTCGATGTAACTCATATAATTTCAAACTTTTTATACAATGGGATTGAGAAACACTTCTCTTTCTTTCTTTCTTTTTATCCAAAGTTTTGTACATTTTGATTTCTTTTGGCTTGTAATTTTGTATTTTTCCTGCCACTAAAGTTTACGTTTTAAACTTCTTTTCTTATAAAATGGTGA

Coding sequence (CDS)

ATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGA

Protein sequence

MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF*

Homology

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BLAST of Cucsa.044890 vs. Swiss-Prot
Match: IAP4_OSHVF (Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 1


Query: 148 GMMETGTPLRVSLLRLLEETDGGCD---DGGGGNLGVAE----KKRDETRNDSMCCVCMG 207
           G +E        +LR +++ +GG D   DGGGG  GV E     K  E      C  C  
Sbjct: 354 GWLEFNPDKIPKVLRYIDD-EGGEDKEEDGGGG--GVIEFPKNNKEVENPKRGSCKACYE 413

Query: 208 RKKGAAFIPCGHTF-CRICSRELWLN---RGSCPLCNRPIIEILDIF 244
           RK   AFIPCGH F C IC+ E++ +   +  CP+C   + ++  IF
Sbjct: 414 RKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIF 457

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BLAST of Cucsa.044890 vs. TrEMBL
Match: A0A0A0KMY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 2.0e-139
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF
Sbjct: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120
           RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA
Sbjct: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120

Query: 121 ERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180
           ERRLRASPRGAEGDIVEF+NNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG
Sbjct: 121 ERRLRASPRGAEGDIVEFNNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180

Query: 181 VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL 240
           VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL
Sbjct: 181 VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL 240

Query: 241 DIF 244
           DIF
Sbjct: 241 DIF 243

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BLAST of Cucsa.044890 vs. TrEMBL
Match: W9RJS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014139 PE=4 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.6e-59
Identity = 140/254 (55.12%), Postives = 162/254 (63.78%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MS L VILQE+ RREREARTI  FL +QMD  D    R+ SLK+RLG   MGCCGATWGF
Sbjct: 1   MSQLGVILQESVRREREARTILCFLREQMDVADEERGRKRSLKERLGLTGMGCCGATWGF 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQS----PGPSGMNLAT 120
           RP + SV D    ++ ++          +EE  L+ +  +P  + S    PGPS MNLA 
Sbjct: 61  RPTTISVLDDDEIEEQQQ----------QEEHHLDPTANNPGPICSDPDPPGPS-MNLAA 120

Query: 121 ALAAERRLRAS---PRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCD- 180
           ALAAER+LR S    RG  GD    S        G    GTP+RVSL+RLLEETDG    
Sbjct: 121 ALAAERQLRTSNDNERGNTGDETTGSRTR-----GSTAPGTPMRVSLMRLLEETDGRDAM 180

Query: 181 ---DGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSC 240
               G GG +G           DS+CCVCMGRKKGAAFIPCGHTFCR+CSRELWLNRG+C
Sbjct: 181 TERSGAGGGVGSC---------DSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGAC 229

Query: 241 PLCNRPIIEILDIF 244
           PLCNRPI+EILDIF
Sbjct: 241 PLCNRPILEILDIF 229

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BLAST of Cucsa.044890 vs. TrEMBL
Match: V4W9T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 2.2e-58
Identity = 133/249 (53.41%), Postives = 162/249 (65.06%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRP---SLKQRLGFKVMGCCGAT 60
           MS L VILQE+  RERE  TI   L ++MDG+D   R R    SLK+RLG K MGCCGAT
Sbjct: 1   MSQLRVILQESLDRERETITILALLREKMDGVDSIRRERGRGRSLKERLGLKSMGCCGAT 60

Query: 61  WGFRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRS---CLSPLSVQSPGPSGMNL 120
           WGFRP + ++ D  GE+  +R  + E   +  + +  N +   C+S + + S   SGMNL
Sbjct: 61  WGFRPNTINLSDSEGEEQQQRHLNQERSTSSAQNQPDNETVPVCMSRIPLIS---SGMNL 120

Query: 121 ATALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDG 180
           A ALAAER LR++  GA        NND +      + GTPLRVSL+RLL ET+G CD  
Sbjct: 121 AAALAAERHLRSAD-GANPAGPTVINNDHNVGPTGTKRGTPLRVSLMRLLAETEG-CDG- 180

Query: 181 GGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNR 240
                       ++  NDSMCCVCMGRKKGAAFIPCGHTFCR+CSRE+WLNRGSCPLCNR
Sbjct: 181 -----------EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNR 232

Query: 241 PIIEILDIF 244
            I+EILDIF
Sbjct: 241 SILEILDIF 232

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BLAST of Cucsa.044890 vs. TrEMBL
Match: I1KNH8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G264100 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 2.5e-57
Identity = 130/243 (53.50%), Postives = 157/243 (64.61%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MS L +ILQE+ R ERE RTI G LT+QMDG+D   RRR +LK+RL F  +GCCGATW F
Sbjct: 1   MSQLGLILQESLRTERETRTILGLLTEQMDGVDRAQRRRRTLKERLRFTGIGCCGATWVF 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120
           RP    VR+ GG     +    +  N  ++    +   +SP    SP  + MNLA ALAA
Sbjct: 61  RP---IVREEGGGAQAHQ----QQTNAAQDPNPNDPKYVSP----SPSGTSMNLAAALAA 120

Query: 121 ERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180
           ER+LR      EG+              ++  GTPLRVSL+RLLEET+GG  + GGG +G
Sbjct: 121 ERQLR----DGEGE-----------GRRVVAPGTPLRVSLMRLLEETEGGDAEKGGGGVG 180

Query: 181 VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL 240
                     ND +CCVCMGRKKGAAFIPCGHTFCR+CSRELWLNRG+CPLCNR I+EIL
Sbjct: 181 ----------NDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEIL 207

Query: 241 DIF 244
           DIF
Sbjct: 241 DIF 207

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BLAST of Cucsa.044890 vs. TrEMBL
Match: A0A067GSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026976mg PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.6e-56
Identity = 130/247 (52.63%), Postives = 160/247 (64.78%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRP-SLKQRLGFKVMGCCGATWG 60
           MS L VILQE+  RERE  TI   L ++MDG+D   R R  +LK+RLG K MGCCGAT G
Sbjct: 1   MSQLRVILQESLDRERETITILALLREKMDGVDSIRRGRGRNLKERLGLKSMGCCGATCG 60

Query: 61  FRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRS---CLSPLSVQSPGPSGMNLAT 120
           FRP + ++ D  GE+  +R  + E   +  + +  N +   C+S + + S   SGMNLA 
Sbjct: 61  FRPNTINLSDSEGEEQQQRHLNQERSTSSAQNQPDNETVPVCMSRIPLIS---SGMNLAA 120

Query: 121 ALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGG 180
           ALAAER LR++  G         NND +      + GTPLRVSL+RLL ET+G CD    
Sbjct: 121 ALAAERHLRSAD-GTNPAGPTVINNDHNVGPTGTKRGTPLRVSLMRLLAETEG-CDG--- 180

Query: 181 GNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPI 240
                     ++  NDSMCCVCMGRKKGAAFIPCGHTFCR+CSRE+WLNRGSCPLCNR I
Sbjct: 181 ---------EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSI 230

Query: 241 IEILDIF 244
           +EILDIF
Sbjct: 241 LEILDIF 230

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BLAST of Cucsa.044890 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 195.7 bits (496), Expect = 3.4e-50
Identity = 118/246 (47.97%), Postives = 135/246 (54.88%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MS L V   +A     ++ T    L  QMDG+D   RR+ +LK+RLGFK +GCCG TWG 
Sbjct: 1   MSQLGVETSQAQPETPQSTTFLDLLRLQMDGLDRSRRRKRTLKERLGFKRIGCCGPTWGL 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120
           R  S++     GEDDD              E   NR       V  P   GMNLATALAA
Sbjct: 61  RLTSNT-----GEDDD--------------EPFENRLVSGSDHVTGPLNQGMNLATALAA 120

Query: 121 ERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180
           ER  R     A G +                  TPL+VSL+RLLEET             
Sbjct: 121 ERNYRTEETEASGSL------------------TPLKVSLMRLLEETAERVVVEENETER 180

Query: 181 VAEKKRDETR---NDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPII 240
           V        R   NDS+CCVCMGRKKGAAFIPCGHTFCR+CSRE+WLNRGSCPLCNRPII
Sbjct: 181 VTASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREVWLNRGSCPLCNRPII 209

Query: 241 EILDIF 244
           EILDI+
Sbjct: 241 EILDIY 209

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BLAST of Cucsa.044890 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 178.7 bits (452), Expect = 4.3e-45
Identity = 111/236 (47.03%), Postives = 125/236 (52.97%), Query Frame = 1


Query: 9   QEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVR 68
           Q      R   T    L  QM G D   R+R +LK+RL FK +GCCG TW  R  +++  
Sbjct: 11  QRMTETHRTTTTFLDLLRRQMSGHDLTRRKR-TLKERLRFKCIGCCGPTWNLRLTNNTTL 70

Query: 69  DGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASP 128
                 DD             E  EL       L       +GMNLATAL AER  R   
Sbjct: 71  HSPTSRDD-------------EIEELQIETGLVLESDHGSGTGMNLATALEAERYNRGES 130

Query: 129 RGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEET-DGGCDDGGGGNLGVAEKKRD 188
             AE D+                  TP RVSL+RLLEET +   DD G     +      
Sbjct: 131 TEAEADM------------------TPRRVSLMRLLEETAEKIVDDDGKETEILTASIGT 190

Query: 189 ETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
            T NDS+CCVCMGRKKGAAFIPCGHTFCR+CSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 191 LTGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]

BLAST of Cucsa.044890 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 135.6 bits (340), Expect = 4.2e-32
Identity = 93/246 (37.80%), Postives = 126/246 (51.22%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGR---RRPSLKQRLGFKVMGCCGAT 60
           MS L  +L+E+    R  RT+   L ++ D I+GG R   +  +LKQRL F  +GCCG  
Sbjct: 1   MSQLGDLLRESEDGTRSERTMMMSLLEE-DQINGGDRTMSKWTTLKQRLRFDWVGCCGKP 60

Query: 61  WGFRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATA 120
              R           +DDD      +V++           CL+  S +       NLA A
Sbjct: 61  LTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGTELDCLTRGSTR-------NLAEA 120

Query: 121 LAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGG 180
           LA ER    +                ++AV         +V L+RLL E+DG CD     
Sbjct: 121 LAEERLAHVTEE--------------ETAV--------TKVPLMRLLAESDG-CDSTTTW 180

Query: 181 NLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPII 240
            LG          ND +CCVCMGR+KGAAFIPCGHT+CR+CSRE+W+NRG+CPLCNR I 
Sbjct: 181 -LG----------NDPLCCVCMGREKGAAFIPCGHTYCRVCSREIWMNRGTCPLCNRSIF 204

Query: 241 EILDIF 244
           ++LD++
Sbjct: 241 DVLDLY 204

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BLAST of Cucsa.044890 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.5e-23
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 155 PLRVSLLRLLEETDGGCD----DGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPC 214
           P R+SL+ LLEE +G       DG        E+    T  +  CCVCM R KGAAFIPC
Sbjct: 163 PARMSLMELLEENEGQMSFVSVDGEA-----EEEVAAVTAAEISCCVCMVRSKGAAFIPC 222

Query: 215 GHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
           GHTFCR+CSRELW+ RG+CPLCN  I+E+LD+F
Sbjct: 223 GHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of Cucsa.044890 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.6e-23
Identity = 55/108 (50.93%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 155 PLRVSLLRLLEETDG-----------------GCDDGGGGNL--GVAEKKRDETRNDSMC 214
           P R+SL+ LLE+ DG                 GCD GG      G AE           C
Sbjct: 167 PPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELG---------C 226

Query: 215 CVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
           CVCM R KGAAFIPCGHTFCR+CSRELW+ RG+CPLCN  I+++LDIF
Sbjct: 227 CVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 265

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BLAST of Cucsa.044890 vs. NCBI nr
Match: gi|700193867|gb|KGN49071.1| (hypothetical protein Csa_6G512860 [Cucumis sativus])

HSP 1 Score: 503.1 bits (1294), Expect = 2.8e-139
Identity = 242/243 (99.59%), Postives = 243/243 (100.00%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF
Sbjct: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120
           RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA
Sbjct: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAA 120

Query: 121 ERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180
           ERRLRASPRGAEGDIVEF+NNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG
Sbjct: 121 ERRLRASPRGAEGDIVEFNNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLG 180

Query: 181 VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL 240
           VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL
Sbjct: 181 VAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEIL 240

Query: 241 DIF 244
           DIF
Sbjct: 241 DIF 243

[Close]

BLAST of Cucsa.044890 vs. NCBI nr
Match: gi|778720231|ref|XP_004134982.2| (PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 2.2e-123
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 29  MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 88
           MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 89  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 148
           REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEF+NNDFDSAVG
Sbjct: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 120

Query: 149 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 208
           MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI
Sbjct: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180

Query: 209 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
           PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 215

[Close]

BLAST of Cucsa.044890 vs. NCBI nr
Match: gi|659079058|ref|XP_008440052.1| (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo])

HSP 1 Score: 426.0 bits (1094), Expect = 4.4e-116
Identity = 204/215 (94.88%), Postives = 210/215 (97.67%), Query Frame = 1


Query: 29  MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 88
           MDG+DGGGRRRPSLKQRLGFKVMGCCGATWGFRPPS SVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 89  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 148
           REEREL+RSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEG IVEF+NNDFDSAVG
Sbjct: 61  REERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDSAVG 120

Query: 149 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 208
           MMETGTPLRVSLLRLLEET+GGCD  GGGNLGVAEKKR+ET NDSMCCVCMGRKKGAAFI
Sbjct: 121 MMETGTPLRVSLLRLLEETEGGCD--GGGNLGVAEKKREETGNDSMCCVCMGRKKGAAFI 180

Query: 209 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
           PCGHTFCR+CSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 181 PCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

[Close]

BLAST of Cucsa.044890 vs. NCBI nr
Match: gi|1009181356|ref|XP_015872124.1| (PREDICTED: death-associated inhibitor of apoptosis 1-like [Ziziphus jujuba])

HSP 1 Score: 251.1 bits (640), Expect = 1.9e-63
Identity = 148/272 (54.41%), Postives = 174/272 (63.97%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGG--GRRRPSLKQRLGFKVMGCCGATW 60
           MS LSVILQE+ RREREA TI GFL +QMD +DG   GRRR +LK+RLG K MGCCGA W
Sbjct: 1   MSQLSVILQESVRREREAGTILGFLREQMDDVDGERVGRRRITLKERLGLKGMGCCGAAW 60

Query: 61  GFRPPSDSVRDGGGEDDD------------------RRVPDLEVMNTRREERELNR--SC 120
           GFRP + SVRD   +++D                  R+  + E +N  +   E N   SC
Sbjct: 61  GFRPTAISVRDNDDDNEDDEEQHQQQQQQQQQQRQRRQGQETETVNAGQAPTENNTDPSC 120

Query: 121 LSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMET----GT 180
             P++  S    GMNLA ALAAER+ RA+    EG     ++N+  S  G +      GT
Sbjct: 121 TDPVNTGS----GMNLAAALAAERQFRATNE-TEGVSAGSTSNNNRSVSGSVAAETAPGT 180

Query: 181 PLRVSLLRLLEETDGGC---DDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCG 240
           PLRVSL+RLLEETDGG     +G G  LG          NDS+CCVCMGRKKGAAFIPCG
Sbjct: 181 PLRVSLMRLLEETDGGDATEKEGVGTTLG----------NDSVCCVCMGRKKGAAFIPCG 240

Query: 241 HTFCRICSRELWLNRGSCPLCNRPIIEILDIF 244
           HTFCR+CSRELWLNRGSCPLCNR I+EILDIF
Sbjct: 241 HTFCRVCSRELWLNRGSCPLCNRSILEILDIF 257

[Close]

BLAST of Cucsa.044890 vs. NCBI nr
Match: gi|703108852|ref|XP_010099141.1| (hypothetical protein L484_014139 [Morus notabilis])

HSP 1 Score: 236.9 bits (603), Expect = 3.8e-59
Identity = 140/254 (55.12%), Postives = 162/254 (63.78%), Query Frame = 1


Query: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60
           MS L VILQE+ RREREARTI  FL +QMD  D    R+ SLK+RLG   MGCCGATWGF
Sbjct: 1   MSQLGVILQESVRREREARTILCFLREQMDVADEERGRKRSLKERLGLTGMGCCGATWGF 60

Query: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQS----PGPSGMNLAT 120
           RP + SV D    ++ ++          +EE  L+ +  +P  + S    PGPS MNLA 
Sbjct: 61  RPTTISVLDDDEIEEQQQ----------QEEHHLDPTANNPGPICSDPDPPGPS-MNLAA 120

Query: 121 ALAAERRLRAS---PRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCD- 180
           ALAAER+LR S    RG  GD    S        G    GTP+RVSL+RLLEETDG    
Sbjct: 121 ALAAERQLRTSNDNERGNTGDETTGSRTR-----GSTAPGTPMRVSLMRLLEETDGRDAM 180

Query: 181 ---DGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSC 240
               G GG +G           DS+CCVCMGRKKGAAFIPCGHTFCR+CSRELWLNRG+C
Sbjct: 181 TERSGAGGGVGSC---------DSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGAC 229

Query: 241 PLCNRPIIEILDIF 244
           PLCNRPI+EILDIF
Sbjct: 241 PLCNRPILEILDIF 229

The following BLAST results are available for this feature:

BLAST of Cucsa.044890 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAP4_OSHVF	2.2e-06	35.51	Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN...	[more]

BLAST of Cucsa.044890 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMY7_CUCSA	2.0e-139	99.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1	[more]
W9RJS4_9ROSA	2.6e-59	55.12	Uncharacterized protein OS=Morus notabilis GN=L484_014139 PE=4 SV=1	[more]
V4W9T1_9ROSI	2.2e-58	53.41	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1	[more]
I1KNH8_SOYBN	2.5e-57	53.50	Uncharacterized protein OS=Glycine max GN=GLYMA_07G264100 PE=4 SV=1	[more]
A0A067GSG4_CITSI	4.6e-56	52.63	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026976mg PE=4 SV=1	[more]

BLAST of Cucsa.044890 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	3.4e-50	47.97	RING/U-box superfamily protein	[more]
AT4G22250.1	4.3e-45	47.03	RING/U-box superfamily protein	[more]
AT1G62370.1	4.2e-32	37.80	RING/U-box superfamily protein	[more]
AT3G25030.1	3.5e-23	54.84	RING/U-box superfamily protein	[more]
AT4G13100.2	4.6e-23	50.93	RING/U-box superfamily protein	[more]

BLAST of Cucsa.044890 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193867\|gb\|KGN49071.1\|	2.8e-139	99.59	hypothetical protein Csa_6G512860 [Cucumis sativus]	[more]
gi\|778720231\|ref\|XP_004134982.2\|	2.2e-123	99.53	PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus]	[more]
gi\|659079058\|ref\|XP_008440052.1\|	4.4e-116	94.88	PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo]	[more]
gi\|1009181356\|ref\|XP_015872124.1\|	1.9e-63	54.41	PREDICTED: death-associated inhibitor of apoptosis 1-like [Ziziphus jujuba]	[more]
gi\|703108852\|ref\|XP_010099141.1\|	3.8e-59	55.12	hypothetical protein L484_014139 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.044890.3	Cucsa.044890.3	mRNA
Cucsa.044890.2	Cucsa.044890.2	mRNA
Cucsa.044890.1	Cucsa.044890.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 167..204 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 167..205 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 155..209 score: 9.5
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 117..215 score: 1.1E-28coord: 1..74 score: 1.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 164..210 score: 2.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 160..212 score: 3.53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.044890	Cla014415	Watermelon (97103) v1	cgywmB026
Cucsa.044890	Csa6G512860	Cucumber (Chinese Long) v2	cgycuB027
Cucsa.044890	MELO3C007424	Melon (DHL92) v3.5.1	cgymeB027
Cucsa.044890	ClCG01G021600	Watermelon (Charleston Gray)	cgywcgB022
Cucsa.044890	CSPI06G33180	Wild cucumber (PI 183967)	cgycpiB028
Cucsa.044890	CmaCh03G005610	Cucurbita maxima (Rimu)	cgycmaB0047
Cucsa.044890	CmaCh07G003360	Cucurbita maxima (Rimu)	cgycmaB0048
Cucsa.044890	CmoCh07G003250	Cucurbita moschata (Rifu)	cgycmoB0043
Cucsa.044890	CmoCh03G005870	Cucurbita moschata (Rifu)	cgycmoB0042
Cucsa.044890	Lsi01G004640	Bottle gourd (USVL1VR-Ls)	cgylsiB022
Cucsa.044890	Cp4.1LG10g09770	Cucurbita pepo (Zucchini)	cgycpeB0033
Cucsa.044890	Cp4.1LG19g08010	Cucurbita pepo (Zucchini)	cgycpeB0039
Cucsa.044890	MELO3C007424.2	Melon (DHL92) v3.6.1	cgymedB025
Cucsa.044890	CsaV3_6G048640	Cucumber (Chinese Long) v3	cgycucB028
Cucsa.044890	Cla97C01G021190	Watermelon (97103) v2	cgywmbB017
Cucsa.044890	Bhi03G000481	Wax gourd	cgywgoB026
Cucsa.044890	Carg07864	Silver-seed gourd	carcgyB0714
Cucsa.044890	Carg13668	Silver-seed gourd	carcgyB1047

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.044890	Cucurbita pepo (Zucchini)	cgycpeB0041
Cucsa.044890	Bottle gourd (USVL1VR-Ls)	cgylsiB024
Cucsa.044890	Watermelon (97103) v2	cgywmbB018
Cucsa.044890	Cucurbita maxima (Rimu)	cgycmaB0040
Cucsa.044890	Melon (DHL92) v3.5.1	cgymeB018