Cucsa.044890.3 (mRNA) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.044890.3
Type	mRNA
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	RING/U-box superfamily protein
Location	scaffold00542 : 1034127 .. 1035960 (-)
Sequence length	1700

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAACGTCTACGTTTTGAACTTTACTAACAAAAAAAAACAAATGAAAGATCAATTATATTATTTGGAGCAATATTGAATTGGTGGATACACGAACCTGAGCTCCGACGAGCCGGCCTTAAATGGCCGTTGACTTAAACAGCCGGCGAAGGGATAGATATCTCCTTCCAACAAAAAAACAAACAAGAAAACCATAAAAAGAAAACGCATTAACACAATCCTTCTTACATTAAGTTGATTTTCTAAATTAATTAATAAATTTCAACTAACTATATGTATTGCAATTATTTAGCACTCCAATGTGTGGTGCTGCATTTCCCAAAGAAAAGAAAATTGAAGAGTCTCTGTAAAGTGTAAACTCCCTCCACTTCTTCATTGTCATTCCTTTGTCTTCTTCTTCTTCTTCTTCTGTTCTCTCTTAATTGCTTAATTAATTTTGGCGTCCACTAAACTTGCATTTAAGACCCTCACGACTCTCGTATTTTTGTTCTTGGGGCCTGGTTTTTTTCGAATTTCGTCCCCTTATGGGGCTCCGAGAATAATTAAGAACACAGAGGTGAGTTTCATCAAAATCTTTCATCAAACTCACGAGATCTCCATGGCCATGGCTAAAGGTAATCCATCCTAATCCTAACTATTTGCATTTCCCCTCAACGGTTTAAATTCATTTTCAAGTTTTACCCATTTTCTTCACAAAATTTTTGTTTCGAGGATCGGAAAAATGAGTCTTCTCAGTGTCATCTTACAGGAAGCCGCCAGGCGAGAAAGAGAGGCTAGGACCATTTGGGGATTTCTTACCGATCAAATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGAAGGAACCATGCTAAGTAACGATGAGGATGAGAACAGACGATTGTTGGTGACGGAAAGAGGTTAGTGGTTTTGCCTCAAGATTCGCGACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATATTGGTGACATGTGGATGCGCTGCGGGTGAGCAAACTTTTTCACGTCCAATAATAAAGTTTAATAGATAAATTAATATTTTCGATGTAACTCATATAATTTCAAACTTTTTATACAATGGGATTGAGAAACACTTCTCTTTCTTTCTTTCTTTTTATCCAAAGTTTTGTACATTTTGATTTCTTTTGGCTTGTAATTTTGTATTTTTCCTGCCACTAAAGTTTACGTTTTAAACTTCTTTTCTTATAAAATGGTGA

mRNA sequence

AAAACGTCTACGTTTTGAACTTTACTAACAAAAAAAAACAAATGAAAGATCAATTATATTATTTGGAGCAATATTGAATTGGTGGATACACGAACCTGAGCTCCGACGAGCCGGCCTTAAATGGCCGTTGACTTAAACAGCCGGCGAAGGGATAGATATCTCCTTCCAACAAAAAAACAAACAAGAAAACCATAAAAAGAAAACGCATTAACACAATCCTTCTTACATTAAGTTGATTTTCTAAATTAATTAATAAATTTCAACTAACTATATGTATTGCAATTATTTAGCACTCCAATGTGTGGTGCTGCATTTCCCAAAGAAAAGAAAATTGAAGAGTCTCTGTAAAGTGTAAACTCCCTCCACTTCTTCATTGTCATTCCTTTGtcttcttcttcttcttcttctGTTCTCTCTTAATTGCTTAATTAATTTTGGCGTCCACTAAACTTGCATTTAAGACCCTCACGACTCTCGTATTTTTGTTCTTGGGGCCTGGTTTTTTTCGAATTTCGTCCCCTTATGGGGCTCCGAGAATAATTAAGAACACAGAGGTGAGTTTCATCAAAATCTTTCATCAAACTCACGAGATCTCCATGGCCATGGCTAAAGGAAGCCGCCAGGCGAGAAAGAGAGGCTAGGACCATTTGGGGATTTCTTACCGATCAAATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGAAGGAACCATGCTAAGTAACGATGAGGATGAGAACAGACGATTGTTGGTGACGGAAAGAGGTTAGTGGTTTTGCCTCAAGATTCGCGACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATATTGGTGACATGTGGATGCGCTGCGGGTGAGCAAACTTTTTCACGTCCAATAATAAAGTTTAATAGATAAATTAATATTTTCGATGTAACTCATATAATTTCAAACTTTTTATACAATGGGATTGAGAAACACTTCTCTTTCTTTCTTTCTTTTTATCCAAAGTTTTGTACATTTTGATTTCTTTTGGCTTGTAATTTTGTATTTTTCCTGCCACTAAAGTTTACGTTTTAAACTTCTTTTCTTATAAAATGGTGA

Coding sequence (CDS)

ATGGACGGCATCGATGGTGGAGGAAGGCGGCGACCCAGTTTAAAGCAACGGCTGGGATTTAAGGTCATGGGCTGTTGTGGTGCCACTTGGGGTTTCCGACCGCCGTCTGATAGCGTCAGAGACGGCGGCGGAGAAGACGATGACCGGAGAGTACCGGATTTGGAGGTGATGAACACGCGCCGGGAGGAAAGGGAGTTGAATCGGAGTTGCTTGAGTCCATTGTCCGTTCAGTCGCCGGGACCGTCCGGGATGAATTTGGCTACAGCTCTAGCGGCAGAGCGTCGTTTAAGAGCATCGCCACGTGGAGCGGAAGGGGACATTGTGGAATTTAGTAACAACGATTTTGACTCAGCGGTTGGAATGATGGAAACCGGAACGCCGTTGAGAGTGTCGTTGTTGCGGTTACTGGAAGAAACAGATGGCGGTTGTGACGACGGTGGTGGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGACGAAACAAGGAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGCGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGATTTGTTCGAGAGAGCTGTGGCTTAATCGAGGATCTTGCCCCCTTTGCAACCGTCCGATTATAGAGATTCTTGATATATTTTGA

Protein sequence

MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF*

Homology

[Close]

BLAST of Cucsa.044890.3 vs. Swiss-Prot
Match: IAP4_OSHVF (Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN=ORF106 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06
Identity = 38/107 (35.51%), Postives = 53/107 (49.53%), Query Frame = 1


Query: 120 GMMETGTPLRVSLLRLLEETDGGCD---DGGGGNLGVAE----KKRDETRNDSMCCVCMG 179
           G +E        +LR +++ +GG D   DGGGG  GV E     K  E      C  C  
Sbjct: 354 GWLEFNPDKIPKVLRYIDD-EGGEDKEEDGGGG--GVIEFPKNNKEVENPKRGSCKACYE 413

Query: 180 RKKGAAFIPCGHTF-CRICSRELWLN---RGSCPLCNRPIIEILDIF 216
           RK   AFIPCGH F C IC+ E++ +   +  CP+C   + ++  IF
Sbjct: 414 RKADIAFIPCGHVFSCNICTMEMFASYKKKKRCPMCRVHVEKVQKIF 457

[Close]

BLAST of Cucsa.044890.3 vs. TrEMBL
Match: A0A0A0KMY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1)

HSP 1 Score: 450.3 bits (1157), Expect = 1.3e-123
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 29  MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 88

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 120
           REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEF+NNDFDSAVG
Sbjct: 89  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 148

Query: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180
           MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI
Sbjct: 149 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 208

Query: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 209 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 243

[Close]

BLAST of Cucsa.044890.3 vs. TrEMBL
Match: A0A061GHE7_THECC (RING/U-box superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_030318 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 9.1e-56
Identity = 127/222 (57.21%), Postives = 147/222 (66.22%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDG+D   RRR S K+RLGFK++GCCGATWG    + SVRD    DD+  V + E  + +
Sbjct: 1   MDGVDRERRRR-SFKERLGFKIVGCCGATWGLGSTTISVRD----DDEVEVVEEEEADQQ 60

Query: 61  REERELNRS-------CLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNN 120
           RE+ E   S       C++P    SP  SGMNLA ALAAER  RA+     G+    S  
Sbjct: 61  REQVEATHSGHNPDPGCINP----SPVSSGMNLAAALAAERHFRAAQEPEGGNAAPTS-- 120

Query: 121 DFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGR 180
           D  S  G+   GTPLRVSL+RLLEE DG C   GGG     EK   E  +DSMCCVCMG+
Sbjct: 121 DGQSNAGLRSPGTPLRVSLMRLLEEADGFC---GGGE---QEKGGVEMGSDSMCCVCMGK 180

Query: 181 KKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           KKGAAFIPCGHTFCR+CSRELWLNRGSCPLCNR I+EILDIF
Sbjct: 181 KKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 205

[Close]

BLAST of Cucsa.044890.3 vs. TrEMBL
Match: V4W9T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-51
Identity = 118/221 (53.39%), Postives = 144/221 (65.16%), Query Frame = 1


Query: 1   MDGIDGGGRRRP---SLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVM 60
           MDG+D   R R    SLK+RLG K MGCCGATWGFRP + ++ D  GE+  +R  + E  
Sbjct: 29  MDGVDSIRRERGRGRSLKERLGLKSMGCCGATWGFRPNTINLSDSEGEEQQQRHLNQERS 88

Query: 61  NTRREERELNRS---CLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNND 120
            +  + +  N +   C+S + + S   SGMNLA ALAAER LR++  GA        NND
Sbjct: 89  TSSAQNQPDNETVPVCMSRIPLIS---SGMNLAAALAAERHLRSAD-GANPAGPTVINND 148

Query: 121 FDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRK 180
            +      + GTPLRVSL+RLL ET+G CD              ++  NDSMCCVCMGRK
Sbjct: 149 HNVGPTGTKRGTPLRVSLMRLLAETEG-CDG------------EEKAGNDSMCCVCMGRK 208

Query: 181 KGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           KGAAFIPCGHTFCR+CSRE+WLNRGSCPLCNR I+EILDIF
Sbjct: 209 KGAAFIPCGHTFCRVCSREMWLNRGSCPLCNRSILEILDIF 232

[Close]

BLAST of Cucsa.044890.3 vs. TrEMBL
Match: A0A022QG81_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013644mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 5.2e-51
Identity = 115/223 (51.57%), Postives = 141/223 (63.23%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDD-------DRRVPD 60
           MDG D   R RPSLK+RLG K  GCCG+TWG  P + SVRD   E++       D   P+
Sbjct: 1   MDGEDRTVRSRPSLKERLGLKAFGCCGSTWGLGPTTISVRDDDQEEEEEEEGTADTMSPE 60

Query: 61  LEVMNTRREERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDI-VEFSN 120
            +V+N  +   E   S   P   QSP  +GMNLA ALAAER++RA+     G   +  S 
Sbjct: 61  TDVVNVDQNPTETGAS--PPCVFQSPATTGMNLAAALAAERQMRAALDSDNGGASLSPSP 120

Query: 121 NDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMG 180
              +  V +   GTP RVSL+RLLEETDG        +L +  +   E   DS+CCVCMG
Sbjct: 121 PRHNRVVSVTAPGTPSRVSLMRLLEETDGY-------DLEMRREVDGEGGCDSVCCVCMG 180

Query: 181 RKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           RK+GAAFIPCGHTFCR+CSRELWLNRG+CPLCNR I+EILDI+
Sbjct: 181 RKRGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIY 214

[Close]

BLAST of Cucsa.044890.3 vs. TrEMBL
Match: A5AKB0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012047 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 9.8e-50
Identity = 116/222 (52.25%), Postives = 147/222 (66.22%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDD--RRVPDLEVMN 60
           MDG+D  GR R S+K+RLGFK M CCGA+WGFRP + +VR+   +DDD  +     +  +
Sbjct: 1   MDGLDRIGRWR-SIKRRLGFKKMSCCGASWGFRPSTMTVREDDNDDDDGVQTQAQAQAQS 60

Query: 61  TRREERELNRSC--LSP---LSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNN 120
             + + E+ ++   +SP      ++P    MNLATALAAER++RA+   A   +   +  
Sbjct: 61  MAQAQEEVGQASPGISPDRGCVGEAPVSPRMNLATALAAERQMRAAQDVATVXVGPTNGG 120

Query: 121 DFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGR 180
             + A      GTPLRVSLLRLLEE+DGG         G  EK+R    +D +CCVCMGR
Sbjct: 121 TSEGA-----PGTPLRVSLLRLLEESDGGD--------GEMEKERG-AGSDQLCCVCMGR 180

Query: 181 KKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           KKGAAFIPCGHTFCR+CSRELWLNRGSCPLCNR I+EILDIF
Sbjct: 181 KKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 207

[Close]

BLAST of Cucsa.044890.3 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 188.3 bits (477), Expect = 4.8e-48
Identity = 110/218 (50.46%), Postives = 124/218 (56.88%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDG+D   RR+ +LK+RLGFK +GCCG TWG R  S++     GEDDD            
Sbjct: 29  MDGLDRSRRRKRTLKERLGFKRIGCCGPTWGLRLTSNT-----GEDDD------------ 88

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 120
             E   NR       V  P   GMNLATALAAER  R     A G +             
Sbjct: 89  --EPFENRLVSGSDHVTGPLNQGMNLATALAAERNYRTEETEASGSL------------- 148

Query: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETR---NDSMCCVCMGRKKGA 180
                TPL+VSL+RLLEET             V        R   NDS+CCVCMGRKKGA
Sbjct: 149 -----TPLKVSLMRLLEETAERVVVEENETERVTASASSTVRGVNNDSVCCVCMGRKKGA 208

Query: 181 AFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           AFIPCGHTFCR+CSRE+WLNRGSCPLCNRPIIEILDI+
Sbjct: 209 AFIPCGHTFCRVCSREVWLNRGSCPLCNRPIIEILDIY 209

[Close]

BLAST of Cucsa.044890.3 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 174.9 bits (442), Expect = 5.5e-44
Identity = 103/208 (49.52%), Postives = 117/208 (56.25%), Query Frame = 1


Query: 9   RRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTRREERELNR 68
           RR+ +LK+RL FK +GCCG TW  R  +++        DD             E  EL  
Sbjct: 38  RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTLHSPTSRDD-------------EIEELQI 97

Query: 69  SCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVGMMETGTPL 128
                L       +GMNLATAL AER  R     AE D+                  TP 
Sbjct: 98  ETGLVLESDHGSGTGMNLATALEAERYNRGESTEAEADM------------------TPR 157

Query: 129 RVSLLRLLEET-DGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFC 188
           RVSL+RLLEET +   DD G     +       T NDS+CCVCMGRKKGAAFIPCGHTFC
Sbjct: 158 RVSLMRLLEETAEKIVDDDGKETEILTASIGTLTGNDSVCCVCMGRKKGAAFIPCGHTFC 214

Query: 189 RICSRELWLNRGSCPLCNRPIIEILDIF 216
           R+CSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 218 RVCSRELWLNRGSCPLCNRPIIEILDIF 214

[Close]

BLAST of Cucsa.044890.3 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 128.3 bits (321), Expect = 5.9e-30
Identity = 84/217 (38.71%), Postives = 111/217 (51.15%), Query Frame = 1


Query: 2   DGIDGGGR---RRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMN 61
           D I+GG R   +  +LKQRL F  +GCCG     R           +DDD      +V++
Sbjct: 29  DQINGGDRTMSKWTTLKQRLRFDWVGCCGKPLTLRLRQAETPIVVDDDDDEEESQNQVVD 88

Query: 62  TRREERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSA 121
                      CL+  S +       NLA ALA ER    +                ++A
Sbjct: 89  FSDPGTGTELDCLTRGSTR-------NLAEALAEERLAHVTEE--------------ETA 148

Query: 122 VGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAA 181
           V         +V L+RLL E+DG CD      LG          ND +CCVCMGR+KGAA
Sbjct: 149 V--------TKVPLMRLLAESDG-CDSTTTW-LG----------NDPLCCVCMGREKGAA 204

Query: 182 FIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           FIPCGHT+CR+CSRE+W+NRG+CPLCNR I ++LD++
Sbjct: 209 FIPCGHTYCRVCSREIWMNRGTCPLCNRSIFDVLDLY 204

[Close]

BLAST of Cucsa.044890.3 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 105.9 bits (263), Expect = 3.1e-23
Identity = 51/93 (54.84%), Postives = 62/93 (66.67%), Query Frame = 1


Query: 127 PLRVSLLRLLEETDGGCD----DGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFIPC 186
           P R+SL+ LLEE +G       DG        E+    T  +  CCVCM R KGAAFIPC
Sbjct: 163 PARMSLMELLEENEGQMSFVSVDGEA-----EEEVAAVTAAEISCCVCMVRSKGAAFIPC 222

Query: 187 GHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           GHTFCR+CSRELW+ RG+CPLCN  I+E+LD+F
Sbjct: 223 GHTFCRLCSRELWVQRGNCPLCNTTILEVLDLF 250

[Close]

BLAST of Cucsa.044890.3 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-23
Identity = 55/108 (50.93%), Postives = 64/108 (59.26%), Query Frame = 1


Query: 127 PLRVSLLRLLEETDG-----------------GCDDGGGGNL--GVAEKKRDETRNDSMC 186
           P R+SL+ LLE+ DG                 GCD GG      G AE           C
Sbjct: 167 PPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELG---------C 226

Query: 187 CVCMGRKKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           CVCM R KGAAFIPCGHTFCR+CSRELW+ RG+CPLCN  I+++LDIF
Sbjct: 227 CVCMVRSKGAAFIPCGHTFCRLCSRELWVQRGNCPLCNTAILQVLDIF 265

[Close]

BLAST of Cucsa.044890.3 vs. NCBI nr
Match: gi|700193867|gb|KGN49071.1| (hypothetical protein Csa_6G512860 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 1.9e-123
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 29  MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 88

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 120
           REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEF+NNDFDSAVG
Sbjct: 89  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 148

Query: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180
           MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI
Sbjct: 149 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 208

Query: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 209 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 243

[Close]

BLAST of Cucsa.044890.3 vs. NCBI nr
Match: gi|778720231|ref|XP_004134982.2| (PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus])

HSP 1 Score: 450.3 bits (1157), Expect = 1.9e-123
Identity = 214/215 (99.53%), Postives = 215/215 (100.00%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 120
           REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEF+NNDFDSAVG
Sbjct: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSAVG 120

Query: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180
           MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI
Sbjct: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180

Query: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 215

[Close]

BLAST of Cucsa.044890.3 vs. NCBI nr
Match: gi|659079058|ref|XP_008440052.1| (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo])

HSP 1 Score: 426.0 bits (1094), Expect = 3.9e-116
Identity = 204/215 (94.88%), Postives = 210/215 (97.67%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDG+DGGGRRRPSLKQRLGFKVMGCCGATWGFRPPS SVRDGGGEDDDRRVPDLEVMNTR
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNNDFDSAVG 120
           REEREL+RSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEG IVEF+NNDFDSAVG
Sbjct: 61  REERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDSAVG 120

Query: 121 MMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAAFI 180
           MMETGTPLRVSLLRLLEET+GGCD  GGGNLGVAEKKR+ET NDSMCCVCMGRKKGAAFI
Sbjct: 121 MMETGTPLRVSLLRLLEETEGGCD--GGGNLGVAEKKREETGNDSMCCVCMGRKKGAAFI 180

Query: 181 PCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           PCGHTFCR+CSRELWLNRGSCPLCNRPIIEILDIF
Sbjct: 181 PCGHTFCRVCSRELWLNRGSCPLCNRPIIEILDIF 213

[Close]

BLAST of Cucsa.044890.3 vs. NCBI nr
Match: gi|590626568|ref|XP_007026205.1| (RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 224.9 bits (572), Expect = 1.3e-55
Identity = 127/222 (57.21%), Postives = 147/222 (66.22%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDG+D   RRR S K+RLGFK++GCCGATWG    + SVRD    DD+  V + E  + +
Sbjct: 1   MDGVDRERRRR-SFKERLGFKIVGCCGATWGLGSTTISVRD----DDEVEVVEEEEADQQ 60

Query: 61  REERELNRS-------CLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFSNN 120
           RE+ E   S       C++P    SP  SGMNLA ALAAER  RA+     G+    S  
Sbjct: 61  REQVEATHSGHNPDPGCINP----SPVSSGMNLAAALAAERHFRAAQEPEGGNAAPTS-- 120

Query: 121 DFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGR 180
           D  S  G+   GTPLRVSL+RLLEE DG C   GGG     EK   E  +DSMCCVCMG+
Sbjct: 121 DGQSNAGLRSPGTPLRVSLMRLLEEADGFC---GGGE---QEKGGVEMGSDSMCCVCMGK 180

Query: 181 KKGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           KKGAAFIPCGHTFCR+CSRELWLNRGSCPLCNR I+EILDIF
Sbjct: 181 KKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSILEILDIF 205

[Close]

BLAST of Cucsa.044890.3 vs. NCBI nr
Match: gi|747096202|ref|XP_011096011.1| (PREDICTED: uncharacterized protein LOC105175305 isoform X1 [Sesamum indicum])

HSP 1 Score: 224.2 bits (570), Expect = 2.2e-55
Identity = 123/221 (55.66%), Postives = 146/221 (66.06%), Query Frame = 1


Query: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60
           MDG+ G   RRPSLK+RLG K +GCCGATWG  P + SVRDG  ED     P  EV+N  
Sbjct: 33  MDGV-GRSLRRPSLKERLGLKGLGCCGATWGVGPTTISVRDGDEEDGGPLSPPTEVINVA 92

Query: 61  REERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIV----EFSNNDFD 120
           +E  E   +    + VQSP P+GMNLA ALAAER+LRA      G  +      SN +  
Sbjct: 93  QEPIENAPAPPCVVVVQSPVPAGMNLAAALAAERQLRAVVDSDNGGAILTPRPNSNGERS 152

Query: 121 S--AVGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRK 180
              A  +   GTP RVSL+RLLEETDG       G +   +++     +DS+CCVCMGRK
Sbjct: 153 PTPAPAITAPGTPSRVSLMRLLEETDGY-----DGEMNKKQEEDHREGSDSVCCVCMGRK 212

Query: 181 KGAAFIPCGHTFCRICSRELWLNRGSCPLCNRPIIEILDIF 216
           KGAAFIPCGHTFCR+CSRELWLNRGSCPLCNRPI+EILDI+
Sbjct: 213 KGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRPILEILDIY 247

The following BLAST results are available for this feature:

BLAST of Cucsa.044890.3 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IAP4_OSHVF	1.9e-06	35.51	Putative apoptosis inhibitor ORF106 OS=Ostreid herpesvirus 1 (isolate France) GN...	[more]

BLAST of Cucsa.044890.3 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMY7_CUCSA	1.3e-123	99.53	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1	[more]
A0A061GHE7_THECC	9.1e-56	57.21	RING/U-box superfamily protein, putative isoform 1 OS=Theobroma cacao GN=TCM_030...	[more]
V4W9T1_9ROSI	1.8e-51	53.39	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1	[more]
A0A022QG81_ERYGU	5.2e-51	51.57	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a013644mg PE=4 SV=1	[more]
A5AKB0_VITVI	9.8e-50	52.25	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_012047 PE=4 SV=1	[more]

BLAST of Cucsa.044890.3 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G03965.1	4.8e-48	50.46	RING/U-box superfamily protein	[more]
AT4G22250.1	5.5e-44	49.52	RING/U-box superfamily protein	[more]
AT1G62370.1	5.9e-30	38.71	RING/U-box superfamily protein	[more]
AT3G25030.1	3.1e-23	54.84	RING/U-box superfamily protein	[more]
AT4G13100.2	4.1e-23	50.93	RING/U-box superfamily protein	[more]

BLAST of Cucsa.044890.3 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700193867\|gb\|KGN49071.1\|	1.9e-123	99.53	hypothetical protein Csa_6G512860 [Cucumis sativus]	[more]
gi\|778720231\|ref\|XP_004134982.2\|	1.9e-123	99.53	PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus]	[more]
gi\|659079058\|ref\|XP_008440052.1\|	3.9e-116	94.88	PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo]	[more]
gi\|590626568\|ref\|XP_007026205.1\|	1.3e-55	57.21	RING/U-box superfamily protein, putative isoform 1 [Theobroma cacao]	[more]
gi\|747096202\|ref\|XP_011096011.1\|	2.2e-55	55.66	PREDICTED: uncharacterized protein LOC105175305 isoform X1 [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cucsa.044890	Cucsa.044890	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cucsa.044890.3	Cucsa.044890.3-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.044890.3.five_prime_UTR.2	Cucsa.044890.3.five_prime_UTR.2	five_prime_UTR
Cucsa.044890.3.five_prime_UTR.1	Cucsa.044890.3.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.044890.3.CDS.1	Cucsa.044890.3.CDS.1	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cucsa.044890.3.three_prime_UTR.1	Cucsa.044890.3.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 167..204 score: 4.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 167..205 score: 10
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 155..209 score: 9.5
None	No IPR available	PANTHER	PTHR12183	UNCHARACTERIZED RING ZINC FINGER-CONTAINING PROTEIN	coord: 117..215 score: 1.1E-28coord: 1..74 score: 1.1
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 164..210 score: 2.9
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 160..212 score: 3.53