Lsi01G004640 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G004640
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING/U-box protein, putative
Locationchr01 : 3876937 .. 3877862 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTCTTCTCAGTGTGATTGTACAGGAAGCCGCCAGGCGAGAAAGGGAGGCTAGGACCATTTGGGGATTTTTGACCGATCAAATGGACGGTGTCGATGGAGGAGGAAGGCGGCGGCCCACTTTAAAGCAACGGCTAGGATTTAAAGTTATGGGCTGTTGTGGTGCTACTTGGGGTTTCCGGCCGCCGACTGTGAGCGTTAGAGACGGCGGCGGTGACGATGACGACCGGAGAGTACCGGATGTGGAGGTGATGAACACGCGCCGGTTTCCGGAGGAGAGGGAGTTGGATCGGAGTTGCTTGAGTCCGTTGTCCGTTCAGTCGCCGGGACCGACCGGGATGAACTTGGCCACGGCTCTGGCGGCGGAGCGTCGTTTAAGAGCGTCCCCACGTGGAACGGAGGGAGGTTTTGTGGAATCTAATAACAATGATTTTGACTCACTGGGCGGAATGATGGGAACGGGGACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGACGGCGGTGGTGGTGGCGGTTGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGAAGAGGCGGGAAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGTGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGTGTGTTCGAGGGAGCTGTGGCTAAATCGAGGATCTTGCCCGCTTTGTAACCGTCCGATTATTGAAATTCTTGATATATTCTGAAGGACCATGATGAGTACGATGCGGATGAGAACAGAGAATTGTTGGTGACGGGAAGGGGTAGTGCTTTTGCCTCAAGATTCGCAACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATCTCTGCGACATGTGGATGCGATGCGGGTGAGAAAACTTTTTCACGTCCGAGAAAAAAGTTTAATTAA

mRNA sequence

ATGAGTCTTCTCAGTGTGATTGTACAGGAAGCCGCCAGGCGAGAAAGGGAGGCTAGGACCATTTGGGGATTTTTGACCGATCAAATGGACGGTGTCGATGGAGGAGGAAGGCGGCGGCCCACTTTAAAGCAACGGCTAGGATTTAAAGTTATGGGCTGTTGTGGTGCTACTTGGGGTTTCCGGCCGCCGACTGTGAGCGTTAGAGACGGCGGCGGTGACGATGACGACCGGAGAGTACCGGATGTGGAGGTGATGAACACGCGCCGGTTTCCGGAGGAGAGGGAGTTGGATCGGAGTTGCTTGAGTCCGTTGTCCGTTCAGTCGCCGGGACCGACCGGGATGAACTTGGCCACGGCTCTGGCGGCGGAGCGTCGTTTAAGAGCGTCCCCACGTGGAACGGAGGGAGGTTTTGTGGAATCTAATAACAATGATTTTGACTCACTGGGCGGAATGATGGGAACGGGGACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGACGGCGGTGGTGGTGGCGGTTGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGAAGAGGCGGGAAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGTGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGACCATGATGAGTACGATGCGGATGAGAACAGAGAATTGTTGGTGACGGGAAGGGGTAGTGCTTTTGCCTCAAGATTCGCAACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATCTCTGCGACATGTGGATGCGATGCGGGTGAGAAAACTTTTTCACGTCCGAGAAAAAAGTTTAATTAA

Coding sequence (CDS)

ATGAGTCTTCTCAGTGTGATTGTACAGGAAGCCGCCAGGCGAGAAAGGGAGGCTAGGACCATTTGGGGATTTTTGACCGATCAAATGGACGGTGTCGATGGAGGAGGAAGGCGGCGGCCCACTTTAAAGCAACGGCTAGGATTTAAAGTTATGGGCTGTTGTGGTGCTACTTGGGGTTTCCGGCCGCCGACTGTGAGCGTTAGAGACGGCGGCGGTGACGATGACGACCGGAGAGTACCGGATGTGGAGGTGATGAACACGCGCCGGTTTCCGGAGGAGAGGGAGTTGGATCGGAGTTGCTTGAGTCCGTTGTCCGTTCAGTCGCCGGGACCGACCGGGATGAACTTGGCCACGGCTCTGGCGGCGGAGCGTCGTTTAAGAGCGTCCCCACGTGGAACGGAGGGAGGTTTTGTGGAATCTAATAACAATGATTTTGACTCACTGGGCGGAATGATGGGAACGGGGACGCCGTTGAGGGTGTCGCTGATGCGGCTGCTGGAAGAAACAGACGGCGGTGGTGGTGGCGGTTGTGGGAATTTGGGAGTGGCGGAAAAAAAGAGAGAAGAGGCGGGAAATGATTCGATGTGCTGCGTGTGCATGGGGAGGAAAAAGGGTGCGGCATTTATCCCATGTGGGCACACGTTTTGTAGGGACCATGATGAGTACGATGCGGATGAGAACAGAGAATTGTTGGTGACGGGAAGGGGTAGTGCTTTTGCCTCAAGATTCGCAACAGACTGTTTTCATTGGACGGCACTGAACGATGGCCGTATCTCTGCGACATGTGGATGCGATGCGGGTGAGAAAACTTTTTCACGTCCGAGAAAAAAGTTTAATTAA

Protein sequence

MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGFRPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGGGGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCRDHDEYDADENRELLVTGRGSAFASRFATDCFHWTALNDGRISATCGCDAGEKTFSRPRKKFN
Homology
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BLAST of Lsi01G004640 vs. TrEMBL
Match: A0A0A0KMY7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 3.1e-104
Identity = 192/218 (88.07%), Postives = 202/218 (92.66%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGF 60
           MSLLSVI+QEAARREREARTIWGFLTDQMDG+DGGGRRRP+LKQRLGFKVMGCCGATWGF
Sbjct: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60

Query: 61  RPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATAL 120
           RPP+ SVRDGGG+DDDRRVPD+EVMNTRR  EEREL+RSCLSPLSVQSPGP+GMNLATAL
Sbjct: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRR--EERELNRSCLSPLSVQSPGPSGMNLATAL 120

Query: 121 AAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGG-GGGGCGN 180
           AAERRLRASPRG EG  VE NNNDFDS  GMM TGTPLRVSL+RLLEETDGG   GG GN
Sbjct: 121 AAERRLRASPRGAEGDIVEFNNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGN 180

Query: 181 LGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
           LGVAEKKR+E  NDSMCCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 LGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCR 216

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BLAST of Lsi01G004640 vs. TrEMBL
Match: W9RJS4_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_014139 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 115/229 (50.22%), Postives = 135/229 (58.95%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGF 60
           MS L VI+QE+ RREREARTI  FL +QMD  D    R+ +LK+RLG   MGCCGATWGF
Sbjct: 1   MSQLGVILQESVRREREARTILCFLREQMDVADEERGRKRSLKERLGLTGMGCCGATWGF 60

Query: 61  RPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQS----PGPTGMNL 120
           RP T+SV     DDD+        +  ++  EE  LD +  +P  + S    PGP+ MNL
Sbjct: 61  RPTTISVL----DDDE--------IEEQQQQEEHHLDPTANNPGPICSDPDPPGPS-MNL 120

Query: 121 ATALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDG----- 180
           A ALAAER+LR S     G   +          G    GTP+RVSLMRLLEETDG     
Sbjct: 121 AAALAAERQLRTSNDNERGNTGDETTG--SRTRGSTAPGTPMRVSLMRLLEETDGRDAMT 180

Query: 181 ---GGGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
              G GGG G+             DS+CCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 ERSGAGGGVGSC------------DSVCCVCMGRKKGAAFIPCGHTFCR 202

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BLAST of Lsi01G004640 vs. TrEMBL
Match: V4W9T1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 1.8e-43
Identity = 113/223 (50.67%), Postives = 138/223 (61.88%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRP---TLKQRLGFKVMGCCGAT 60
           MS L VI+QE+  RERE  TI   L ++MDGVD   R R    +LK+RLG K MGCCGAT
Sbjct: 1   MSQLRVILQESLDRERETITILALLREKMDGVDSIRRERGRGRSLKERLGLKSMGCCGAT 60

Query: 61  WGFRPPTVSVRDGGGDDDDRRVPDVE-VMNTRRFPEERELDRSCLSPLSVQSPGPTGMNL 120
           WGFRP T+++ D  G++  +R  + E   ++ +   + E    C+S + + S   +GMNL
Sbjct: 61  WGFRPNTINLSDSEGEEQQQRHLNQERSTSSAQNQPDNETVPVCMSRIPLIS---SGMNL 120

Query: 121 ATALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGT--GTPLRVSLMRLLEETDGGGG 180
           A ALAAER LR++      G    NN   D   G  GT  GTPLRVSLMRLL ET+G  G
Sbjct: 121 AAALAAERHLRSADGANPAGPTVINN---DHNVGPTGTKRGTPLRVSLMRLLAETEGCDG 180

Query: 181 GGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
                        E+AGNDSMCCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 ------------EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCR 205

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BLAST of Lsi01G004640 vs. TrEMBL
Match: A0A067GSG4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026976mg PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.3e-41
Identity = 112/221 (50.68%), Postives = 136/221 (61.54%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRP-TLKQRLGFKVMGCCGATWG 60
           MS L VI+QE+  RERE  TI   L ++MDGVD   R R   LK+RLG K MGCCGAT G
Sbjct: 1   MSQLRVILQESLDRERETITILALLREKMDGVDSIRRGRGRNLKERLGLKSMGCCGATCG 60

Query: 61  FRPPTVSVRDGGGDDDDRRVPDVE-VMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLAT 120
           FRP T+++ D  G++  +R  + E   ++ +   + E    C+S + + S   +GMNLA 
Sbjct: 61  FRPNTINLSDSEGEEQQQRHLNQERSTSSAQNQPDNETVPVCMSRIPLIS---SGMNLAA 120

Query: 121 ALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGT--GTPLRVSLMRLLEETDGGGGGG 180
           ALAAER LR++      G    NN   D   G  GT  GTPLRVSLMRLL ET+G  G  
Sbjct: 121 ALAAERHLRSADGTNPAGPTVINN---DHNVGPTGTKRGTPLRVSLMRLLAETEGCDG-- 180

Query: 181 CGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
                      E+AGNDSMCCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 ----------EEKAGNDSMCCVCMGRKKGAAFIPCGHTFCR 203

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BLAST of Lsi01G004640 vs. TrEMBL
Match: I1KNH8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_07G264100 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 2.8e-41
Identity = 111/218 (50.92%), Postives = 126/218 (57.80%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGF 60
           MS L +I+QE+ R ERE RTI G LT+QMDGVD   RRR TLK+RL F  +GCCGATW F
Sbjct: 1   MSQLGLILQESLRTERETRTILGLLTEQMDGVDRAQRRRRTLKERLRFTGIGCCGATWVF 60

Query: 61  RPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATAL 120
           RP    VR+ GG              T    +    D   +SP    SP  T MNLA AL
Sbjct: 61  RP---IVREEGGG------AQAHQQQTNAAQDPNPNDPKYVSP----SPSGTSMNLAAAL 120

Query: 121 AAERRLRASPRGTEGGFVESNNNDFDSLG-GMMGTGTPLRVSLMRLLEETDGGGGGGCGN 180
           AAER+LR                D +  G  ++  GTPLRVSLMRLLEET+GG       
Sbjct: 121 AAERQLR----------------DGEGEGRRVVAPGTPLRVSLMRLLEETEGGD------ 180

Query: 181 LGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
              AEK     GND +CCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 ---AEKGGGGVGNDWVCCVCMGRKKGAAFIPCGHTFCR 180

[Close]
BLAST of Lsi01G004640 vs. TAIR10
Match: AT4G03965.1 (AT4G03965.1 RING/U-box superfamily protein)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-32
Identity = 92/228 (40.35%), Postives = 107/228 (46.93%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGF 60
           MS L V   +A     ++ T    L  QMDG+D   RR+ TLK+RLGFK +GCCG TWG 
Sbjct: 1   MSQLGVETSQAQPETPQSTTFLDLLRLQMDGLDRSRRRKRTLKERLGFKRIGCCGPTWGL 60

Query: 61  RPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATAL 120
           R     +    G+DDD    +  V  +                  V  P   GMNLATAL
Sbjct: 61  R-----LTSNTGEDDDEPFENRLVSGSDH----------------VTGPLNQGMNLATAL 120

Query: 121 AAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGGGGGGCGNL 180
           AAER  R       G                    TPL+VSLMRLLEET          +
Sbjct: 121 AAERNYRTEETEASGSL------------------TPLKVSLMRLLEET-------AERV 180

Query: 181 GVAEKKREEA-----------GNDSMCCVCMGRKKGAAFIPCGHTFCR 218
            V E + E              NDS+CCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 VVEENETERVTASASSTVRGVNNDSVCCVCMGRKKGAAFIPCGHTFCR 182

[Close]
BLAST of Lsi01G004640 vs. TAIR10
Match: AT4G22250.1 (AT4G22250.1 RING/U-box superfamily protein)

HSP 1 Score: 112.5 bits (280), Expect = 4.3e-25
Identity = 87/215 (40.47%), Postives = 94/215 (43.72%), Query Frame = 1 

Query: 9   QEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGFRPPTVSVR 68
           Q      R   T    L  QM G D   RR+ TLK+RL FK +GCCG TW  R    +  
Sbjct: 11  QRMTETHRTTTTFLDLLRRQMSGHDLT-RRKRTLKERLRFKCIGCCGPTWNLRLTNNTTL 70

Query: 69  DGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATALAAERRLRA 128
                 DD               E  EL       L       TGMNLATAL AER  R 
Sbjct: 71  HSPTSRDD---------------EIEELQIETGLVLESDHGSGTGMNLATALEAERYNRG 130

Query: 129 SPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEET------DGGGGGGCGNLGV 188
                     ES   + D         TP RVSLMRLLEET      D G         +
Sbjct: 131 ----------ESTEAEADM--------TPRRVSLMRLLEETAEKIVDDDGKETEILTASI 187

Query: 189 AEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
                   GNDS+CCVCMGRKKGAAFIPCGHTFCR
Sbjct: 191 GTL----TGNDSVCCVCMGRKKGAAFIPCGHTFCR 187

[Close]
BLAST of Lsi01G004640 vs. TAIR10
Match: AT1G62370.1 (AT1G62370.1 RING/U-box superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 2.5e-20
Identity = 78/225 (34.67%), Postives = 104/225 (46.22%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGR---RRPTLKQRLGFKVMGCCGAT 60
           MS L  +++E+    R  RT+   L ++ D ++GG R   +  TLKQRL F  +GCCG  
Sbjct: 1   MSQLGDLLRESEDGTRSERTMMMSLLEE-DQINGGDRTMSKWTTLKQRLRFDWVGCCG-- 60

Query: 61  WGFRPPTVSVRDGG-----GDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPT 120
              +P T+ +R         DDDD      +V++        ELD  CL+  S +     
Sbjct: 61  ---KPLTLRLRQAETPIVVDDDDDEEESQNQVVDFSDPGTGTELD--CLTRGSTR----- 120

Query: 121 GMNLATALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGG 180
             NLA ALA ER    +   T                         +V LMRLL E+DG 
Sbjct: 121 --NLAEALAEERLAHVTEEET----------------------AVTKVPLMRLLAESDG- 177

Query: 181 GGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
                      +      GND +CCVCMGR+KGAAFIPCGHT+CR
Sbjct: 181 ----------CDSTTTWLGNDPLCCVCMGREKGAAFIPCGHTYCR 177

[Close]
BLAST of Lsi01G004640 vs. TAIR10
Match: AT3G25030.1 (AT3G25030.1 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-09
Identity = 31/61 (50.82%), Postives = 36/61 (59.02%), Query Frame = 1 

Query: 157 PLRVSLMRLLEETDGGGGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFC 216
           P R+SLM LLEE +G       +    E+       +  CCVCM R KGAAFIPCGHTFC
Sbjct: 163 PARMSLMELLEENEGQMSFVSVDGEAEEEVAAVTAAEISCCVCMVRSKGAAFIPCGHTFC 222

Query: 217 R 218
           R
Sbjct: 223 R 223

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BLAST of Lsi01G004640 vs. TAIR10
Match: AT4G13100.2 (AT4G13100.2 RING/U-box superfamily protein)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-09
Identity = 38/76 (50.00%), Postives = 40/76 (52.63%), Query Frame = 1 

Query: 157 PLRVSLMRLLEETDGG-------------GGGGC--GNLGVAEKKREEAGNDSMCCVCMG 216
           P R+SLM LLE+ DG              G  GC  G   VA     E G    CCVCM 
Sbjct: 167 PPRMSLMELLEDNDGHMYELSARDEVEVEGRDGCDGGGEAVAVTGAAELG----CCVCMV 226

Query: 217 RKKGAAFIPCGHTFCR 218
           R KGAAFIPCGHTFCR
Sbjct: 227 RSKGAAFIPCGHTFCR 238

[Close]
BLAST of Lsi01G004640 vs. NCBI nr
Match: gi|700193867|gb|KGN49071.1| (hypothetical protein Csa_6G512860 [Cucumis sativus])

HSP 1 Score: 386.3 bits (991), Expect = 4.4e-104
Identity = 192/218 (88.07%), Postives = 202/218 (92.66%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPTLKQRLGFKVMGCCGATWGF 60
           MSLLSVI+QEAARREREARTIWGFLTDQMDG+DGGGRRRP+LKQRLGFKVMGCCGATWGF
Sbjct: 1   MSLLSVILQEAARREREARTIWGFLTDQMDGIDGGGRRRPSLKQRLGFKVMGCCGATWGF 60

Query: 61  RPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLATAL 120
           RPP+ SVRDGGG+DDDRRVPD+EVMNTRR  EEREL+RSCLSPLSVQSPGP+GMNLATAL
Sbjct: 61  RPPSDSVRDGGGEDDDRRVPDLEVMNTRR--EERELNRSCLSPLSVQSPGPSGMNLATAL 120

Query: 121 AAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGG-GGGGCGN 180
           AAERRLRASPRG EG  VE NNNDFDS  GMM TGTPLRVSL+RLLEETDGG   GG GN
Sbjct: 121 AAERRLRASPRGAEGDIVEFNNNDFDSAVGMMETGTPLRVSLLRLLEETDGGCDDGGGGN 180

Query: 181 LGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
           LGVAEKKR+E  NDSMCCVCMGRKKGAAFIPCGHTFCR
Sbjct: 181 LGVAEKKRDETRNDSMCCVCMGRKKGAAFIPCGHTFCR 216

[Close]
BLAST of Lsi01G004640 vs. NCBI nr
Match: gi|659079058|ref|XP_008440052.1| (PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo])

HSP 1 Score: 344.7 bits (883), Expect = 1.5e-91
Identity = 170/189 (89.95%), Postives = 177/189 (93.65%), Query Frame = 1 

Query: 29  MDGVDGGGRRRPTLKQRLGFKVMGCCGATWGFRPPTVSVRDGGGDDDDRRVPDVEVMNTR 88
           MDGVDGGGRRRP+LKQRLGFKVMGCCGATWGFRPP+VSVRDGGG+DDDRRVPD+EVMNTR
Sbjct: 1   MDGVDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSVSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 89  RFPEERELDRSCLSPLSVQSPGPTGMNLATALAAERRLRASPRGTEGGFVESNNNDFDSL 148
           R  EERELDRSCLSPLSVQSPGP+GMNLATALAAERRLRASPRG EGG VE NNNDFDS 
Sbjct: 61  R--EERELDRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGGIVEFNNNDFDSA 120

Query: 149 GGMMGTGTPLRVSLMRLLEETDGGGGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAF 208
            GMM TGTPLRVSL+RLLEET+GG  GG GNLGVAEKKREE GNDSMCCVCMGRKKGAAF
Sbjct: 121 VGMMETGTPLRVSLLRLLEETEGGCDGG-GNLGVAEKKREETGNDSMCCVCMGRKKGAAF 180

Query: 209 IPCGHTFCR 218
           IPCGHTFCR
Sbjct: 181 IPCGHTFCR 186

[Close]
BLAST of Lsi01G004640 vs. NCBI nr
Match: gi|778720231|ref|XP_004134982.2| (PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 2.6e-88
Identity = 165/190 (86.84%), Postives = 174/190 (91.58%), Query Frame = 1 

Query: 29  MDGVDGGGRRRPTLKQRLGFKVMGCCGATWGFRPPTVSVRDGGGDDDDRRVPDVEVMNTR 88
           MDG+DGGGRRRP+LKQRLGFKVMGCCGATWGFRPP+ SVRDGGG+DDDRRVPD+EVMNTR
Sbjct: 1   MDGIDGGGRRRPSLKQRLGFKVMGCCGATWGFRPPSDSVRDGGGEDDDRRVPDLEVMNTR 60

Query: 89  RFPEERELDRSCLSPLSVQSPGPTGMNLATALAAERRLRASPRGTEGGFVESNNNDFDSL 148
           R  EEREL+RSCLSPLSVQSPGP+GMNLATALAAERRLRASPRG EG  VE NNNDFDS 
Sbjct: 61  R--EERELNRSCLSPLSVQSPGPSGMNLATALAAERRLRASPRGAEGDIVEFNNNDFDSA 120

Query: 149 GGMMGTGTPLRVSLMRLLEETDGG-GGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAA 208
            GMM TGTPLRVSL+RLLEETDGG   GG GNLGVAEKKR+E  NDSMCCVCMGRKKGAA
Sbjct: 121 VGMMETGTPLRVSLLRLLEETDGGCDDGGGGNLGVAEKKRDETRNDSMCCVCMGRKKGAA 180

Query: 209 FIPCGHTFCR 218
           FIPCGHTFCR
Sbjct: 181 FIPCGHTFCR 188

[Close]
BLAST of Lsi01G004640 vs. NCBI nr
Match: gi|1009181356|ref|XP_015872124.1| (PREDICTED: death-associated inhibitor of apoptosis 1-like [Ziziphus jujuba])

HSP 1 Score: 216.1 bits (549), Expect = 7.9e-53
Identity = 128/241 (53.11%), Postives = 149/241 (61.83%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGG--GRRRPTLKQRLGFKVMGCCGATW 60
           MS LSVI+QE+ RREREA TI GFL +QMD VDG   GRRR TLK+RLG K MGCCGA W
Sbjct: 1   MSQLSVILQESVRREREAGTILGFLREQMDDVDGERVGRRRITLKERLGLKGMGCCGAAW 60

Query: 61  GFRPPTVSVRDGGGDDDD------------------RRVPDVEVMNTRRFPEERELDRSC 120
           GFRP  +SVRD   D++D                  R+  + E +N  + P E   D SC
Sbjct: 61  GFRPTAISVRDNDDDNEDDEEQHQQQQQQQQQQRQRRQGQETETVNAGQAPTENNTDPSC 120

Query: 121 LSPLSVQSPGPTGMNLATALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGT----GT 180
             P++  S    GMNLA ALAAER+ RA+   TEG    S +N+  S+ G +      GT
Sbjct: 121 TDPVNTGS----GMNLAAALAAERQFRATNE-TEGVSAGSTSNNNRSVSGSVAAETAPGT 180

Query: 181 PLRVSLMRLLEETDGGGGGGCGNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFC 218
           PLRVSLMRLLEETDGG       +G         GNDS+CCVCMGRKKGAAFIPCGHTFC
Sbjct: 181 PLRVSLMRLLEETDGGDATEKEGVGTT------LGNDSVCCVCMGRKKGAAFIPCGHTFC 230

[Close]
BLAST of Lsi01G004640 vs. NCBI nr
Match: gi|802778942|ref|XP_012091278.1| (PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas])

HSP 1 Score: 198.4 bits (503), Expect = 1.7e-47
Identity = 118/220 (53.64%), Postives = 143/220 (65.00%), Query Frame = 1 

Query: 1   MSLLSVIVQEAARREREARTIWGFLTDQMDGVDGGGRRRPT---LKQRLGFKVMGCCGAT 60
           MS LSVI+QE+ARRERE  TI G L  QMD VDG  RRR T   LK+RLG + + CCGAT
Sbjct: 1   MSQLSVILQESARREREVITIIGLLRQQMDTVDG--RRRTTRMGLKERLGLRGLACCGAT 60

Query: 61  WGFRPPTVSVRDGGGDDDDRRVPDVEVMNTRRFPEERELDRSCLSPLSVQSPGPTGMNLA 120
           WGFRP T+SVRD   D+++ R    EV+NT   P +   D  CL P+    P  +GMNLA
Sbjct: 61  WGFRPTTISVRD---DEEEPREQQTEVVNTGPTPSQEISDPDCL-PI----PASSGMNLA 120

Query: 121 TALAAERRLRASPRGTEGGFVESNNNDFDSLGGMMGTGTPLRVSLMRLLEETDGGGGGGC 180
            ALAAER+ R      E   +  +N + DS   M   GTPLRVSLMRLLEE++ G G   
Sbjct: 121 AALAAERQFR------EASSMNGSNGNADS---MTAPGTPLRVSLMRLLEESEVGDG--- 180

Query: 181 GNLGVAEKKREEAGNDSMCCVCMGRKKGAAFIPCGHTFCR 218
             +G  EK+    G+D++CCVCM RKKGAAFIPCGHT+CR
Sbjct: 181 -EIGGGEKEGGGVGSDTVCCVCMVRKKGAAFIPCGHTYCR 197

The following BLAST results are available for this feature:
BLAST of Lsi01G004640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G004640 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KMY7_CUCSA3.1e-10488.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G512860 PE=4 SV=1[more]
W9RJS4_9ROSA1.8e-4350.22Uncharacterized protein OS=Morus notabilis GN=L484_014139 PE=4 SV=1[more]
V4W9T1_9ROSI1.8e-4350.67Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017636mg PE=4 SV=1[more]
A0A067GSG4_CITSI1.3e-4150.68Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026976mg PE=4 SV=1[more]
I1KNH8_SOYBN2.8e-4150.92Uncharacterized protein OS=Glycine max GN=GLYMA_07G264100 PE=4 SV=1[more]
BLAST of Lsi01G004640 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G03965.12.1e-3240.35 RING/U-box superfamily protein[more]
AT4G22250.14.3e-2540.47 RING/U-box superfamily protein[more]
AT1G62370.12.5e-2034.67 RING/U-box superfamily protein[more]
AT3G25030.11.5e-0950.82 RING/U-box superfamily protein[more]
AT4G13100.21.5e-0950.00 RING/U-box superfamily protein[more]
BLAST of Lsi01G004640 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700193867|gb|KGN49071.1|4.4e-10488.07hypothetical protein Csa_6G512860 [Cucumis sativus][more]
gi|659079058|ref|XP_008440052.1|1.5e-9189.95PREDICTED: uncharacterized protein LOC103484644 [Cucumis melo][more]
gi|778720231|ref|XP_004134982.2|2.6e-8886.84PREDICTED: uncharacterized protein LOC101211804 [Cucumis sativus][more]
gi|1009181356|ref|XP_015872124.1|7.9e-5353.11PREDICTED: death-associated inhibitor of apoptosis 1-like [Ziziphus jujuba][more]
gi|802778942|ref|XP_012091278.1|1.7e-4753.64PREDICTED: uncharacterized protein LOC105649284 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G004640.1Lsi01G004640.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 184..218
score: 1.
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 187..217
score: 3.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G004640Csa6G512860Cucumber (Chinese Long) v2culsiB434
Lsi01G004640CSPI06G33180Wild cucumber (PI 183967)cpilsiB439
Lsi01G004640Cucsa.044890Cucumber (Gy14) v1cgylsiB022
Lsi01G004640CmaCh03G005610Cucurbita maxima (Rimu)cmalsiB597
Lsi01G004640CmaCh07G003360Cucurbita maxima (Rimu)cmalsiB786
Lsi01G004640CmoCh07G003250Cucurbita moschata (Rifu)cmolsiB774
Lsi01G004640CmoCh03G005870Cucurbita moschata (Rifu)cmolsiB582
Lsi01G004640Cla014415Watermelon (97103) v1lsiwmB144
Lsi01G004640MELO3C007424Melon (DHL92) v3.5.1lsimeB149
Lsi01G004640ClCG01G021600Watermelon (Charleston Gray)lsiwcgB127
Lsi01G004640MELO3C007424.2Melon (DHL92) v3.6.1lsimedB156
Lsi01G004640Cla97C01G021190Watermelon (97103) v2lsiwmbB115
Lsi01G004640Bhi03G000481Wax gourdlsiwgoB168
Lsi01G004640Cp4.1LG19g08010Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G004640Cp4.1LG10g09770Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G004640CsGy6G032750Cucumber (Gy14) v2cgyblsiB398
Lsi01G004640Carg07864Silver-seed gourdcarlsiB585
Lsi01G004640Carg13668Silver-seed gourdcarlsiB846
Lsi01G004640CsaV3_6G048640Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G004640Cucumber (Chinese Long) v3cuclsiB017
Lsi01G004640Watermelon (97103) v2lsiwmbB112
Lsi01G004640Bottle gourd (USVL1VR-Ls)lsilsiB064
Lsi01G004640Cucurbita maxima (Rimu)cmalsiB367
Lsi01G004640Cucurbita pepo (Zucchini)cpelsiB413
Lsi01G004640Melon (DHL92) v3.5.1lsimeB129
Lsi01G004640Cucumber (Gy14) v2cgyblsiB014