CsaV3_7G007020 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_7G007020
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	conserved peptide upstream open reading frame 37
Location	chr7 : 4383359 .. 4383646 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGTATCCACAGCTTGGTTTCTAAACCCTATAAATGGTCTATTAATTTTGTTACTGAAGATCATTGACTCCTGGAACTATATGGTTAACCTTCCTGTTTTTTTTTCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

mRNA sequence

AAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

Coding sequence (CDS)

AAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCGAGTCAAACACGATTTCGGGCATTGAAACATGAAAATGGGATTGCTGGGAAGCCAACAATTATTGTTAAAGTGATAGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAG

Protein sequence

KGLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of CsaV3_7G007020 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43769.1 hypothetical protein Csa_7G066260 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 6.1e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. NCBI nr
Match: EXB57311.1 (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 112.5 bits (280), Expect = 5.1e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. NCBI nr
Match: PON40251.1 (hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypothetical protein TorRG33x02_168420 [Trema orientalis])

HSP 1 Score: 111.3 bits (277), Expect = 1.1e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAG+PTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. NCBI nr
Match: XP_022763666.1 (uncharacterized protein LOC111309083 [Durio zibethinus])

HSP 1 Score: 110.9 bits (276), Expect = 1.5e-21
Identity = 49/56 (87.50%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 4   KVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
           KVVMVCQAA QTRFRALK+ENGIAGKPTI+V+VIACFQP+++CQAEYFRHLLKPVT
Sbjct: 73  KVVMVCQAAGQTRFRALKYENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 128

[Close]

BLAST of CsaV3_7G007020 vs. NCBI nr
Match: KHG02368.1 (hypothetical protein F383_26115 [Gossypium arboreum])

HSP 1 Score: 110.2 bits (274), Expect = 2.5e-21
Identity = 48/53 (90.57%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTI+V+VIACFQP+++CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIVVRVIACFQPMEDCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TAIR10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37)

HSP 1 Score: 89.7 bits (221), Expect = 6.5e-19
Identity = 41/53 (77.36%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQ+A QTRFR LKHE+GI G   I+V+VIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of CsaV3_7G007020 vs. TAIR10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-18
Identity = 38/54 (70.37%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHE-NGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MV Q+A QTRFR  K+E NG + +PTI+V+VIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of CsaV3_7G007020 vs. TAIR10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40)

HSP 1 Score: 82.0 bits (201), Expect = 1.3e-16
Identity = 35/53 (66.04%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQ+  +TRFR LK+E G A + TI+V+VI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TAIR10
Match: AT1G29951.1 (conserved peptide upstream open reading frame 35)

HSP 1 Score: 39.7 bits (91), Expect = 7.7e-04
Identity = 17/23 (73.91%), Postives = 19/23 (82.61%), Query Frame = 0


Query: 37 IACFQPLQNCQAEYFRHLLKPVT 60
          IA +Q +Q CQAEYFR LLKPVT
Sbjct: 26 IANYQSVQVCQAEYFRQLLKPVT 48

[Close]

BLAST of CsaV3_7G007020 vs. TrEMBL
Match: tr|A0A1S4E0J3|A0A1S4E0J3_CUCME (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TrEMBL
Match: tr|A0A0A0K458|A0A0A0K458_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 4.0e-23
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TrEMBL
Match: tr|W9R7U4|W9R7U4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAGKPTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TrEMBL
Match: tr|A0A2P5EP76|A0A2P5EP76_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAG+PTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of CsaV3_7G007020 vs. TrEMBL
Match: tr|A0A2P5AUS4|A0A2P5AUS4_PARAD (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298860 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.6e-22
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 7  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 60
          MVCQAASQTRFRALKHENGIAG+PTIIV+VIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

The following BLAST results are available for this feature:

BLAST of CsaV3_7G007020 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901746.1	6.1e-23	100.00	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43...	[more]
EXB57311.1	5.1e-22	96.23	hypothetical protein L484_011398 [Morus notabilis]	[more]
PON40251.1	1.1e-21	94.34	hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypot...	[more]
XP_022763666.1	1.5e-21	87.50	uncharacterized protein LOC111309083 [Durio zibethinus]	[more]
KHG02368.1	2.5e-21	90.57	hypothetical protein F383_26115 [Gossypium arboreum]	[more]

BLAST of CsaV3_7G007020 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50011.1	6.5e-19	77.36	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	5.5e-18	70.37	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	1.3e-16	66.04	conserved peptide upstream open reading frame 40	[more]
AT1G29951.1	7.7e-04	73.91	conserved peptide upstream open reading frame 35	[more]

BLAST of CsaV3_7G007020 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_7G007020 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0J3\|A0A1S4E0J3_CUCME	4.0e-23	100.00	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K458\|A0A0A0K458_CUCSA	4.0e-23	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
tr\|W9R7U4\|W9R7U4_9ROSA	3.4e-22	96.23	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
tr\|A0A2P5EP76\|A0A2P5EP76_9ROSA	7.6e-22	94.34	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 S...	[more]
tr\|A0A2P5AUS4\|A0A2P5AUS4_PARAD	7.6e-22	94.34	Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_298860 PE...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0046983	protein dimerization activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_7G007020.1	CsaV3_7G007020.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281	FAMILY NOT NAMED	coord: 7..59
None	No IPR available	PANTHER	PTHR35281:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATED	coord: 7..59

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_7G007020	CmaCh11G016600	Cucurbita maxima (Rimu)	cmacucB0180
CsaV3_7G007020	CmaCh19G004700	Cucurbita maxima (Rimu)	cmacucB0644
CsaV3_7G007020	CmoCh19G004860	Cucurbita moschata (Rifu)	cmocucB0630
CsaV3_7G007020	CmoCh04G004230	Cucurbita moschata (Rifu)	cmocucB0910
CsaV3_7G007020	CmoCh11G014760	Cucurbita moschata (Rifu)	cmocucB0157
CsaV3_7G007020	Cp4.1LG04g07130	Cucurbita pepo (Zucchini)	cpecucB0866
CsaV3_7G007020	Cp4.1LG15g03690	Cucurbita pepo (Zucchini)	cpecucB0328
CsaV3_7G007020	CsGy7G005720	Cucumber (Gy14) v2	cgybcucB348
CsaV3_7G007020	Carg08072	Silver-seed gourd	carcucB0413
CsaV3_7G007020	Cla001297	Watermelon (97103) v1	cucwmB602
CsaV3_7G007020	MELO3C018592	Melon (DHL92) v3.5.1	cucmeB548
CsaV3_7G007020	ClCG10G009540	Watermelon (Charleston Gray)	cucwcgB556
CsaV3_7G007020	ClCG09G015900	Watermelon (Charleston Gray)	cucwcgB535
CsaV3_7G007020	Lsi03G007250	Bottle gourd (USVL1VR-Ls)	cuclsiB551
CsaV3_7G007020	Lsi03G009660	Bottle gourd (USVL1VR-Ls)	cuclsiB554
CsaV3_7G007020	MELO3C018591.2	Melon (DHL92) v3.6.1	cucmedB536
CsaV3_7G007020	Cla97C10G192610	Watermelon (97103) v2	cucwmbB537
CsaV3_7G007020	Bhi11G000860	Wax gourd	cucwgoB674
CsaV3_7G007020	Bhi05G000746	Wax gourd	cucwgoB700

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_7G007020	Wax gourd	cucwgoB686
CsaV3_7G007020	Silver-seed gourd	carcucB0321
CsaV3_7G007020	Silver-seed gourd	carcucB0323
CsaV3_7G007020	Silver-seed gourd	carcucB0770
CsaV3_7G007020	Cucumber (Gy14) v1	cgycucB342
CsaV3_7G007020	Cucurbita maxima (Rimu)	cmacucB0171
CsaV3_7G007020	Cucurbita maxima (Rimu)	cmacucB0639
CsaV3_7G007020	Cucurbita moschata (Rifu)	cmocucB0160
CsaV3_7G007020	Cucurbita moschata (Rifu)	cmocucB0623
CsaV3_7G007020	Cucurbita pepo (Zucchini)	cpecucB0323
CsaV3_7G007020	Cucurbita pepo (Zucchini)	cpecucB0868
CsaV3_7G007020	Wild cucumber (PI 183967)	cpicucB252
CsaV3_7G007020	Wild cucumber (PI 183967)	cpicucB415
CsaV3_7G007020	Bottle gourd (USVL1VR-Ls)	cuclsiB555
CsaV3_7G007020	Melon (DHL92) v3.5.1	cucmeB585
CsaV3_7G007020	Melon (DHL92) v3.6.1	cucmedB572
CsaV3_7G007020	Watermelon (97103) v1	cucwmB580
CsaV3_7G007020	Watermelon (97103) v1	cucwmB587
CsaV3_7G007020	Watermelon (97103) v2	cucwmbB581