Cla97C10G192610 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C10G192610
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	conserved peptide upstream open reading frame 37
Location	Cla97Chr10 : 20432016 .. 20432321 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGTTTGTCAACTCAGTTCTTGCCTTGTGATTTTGCTTGTGGATTAACAACTGAAGTAATTTTACATTTACTTTATTTGGAATCTCTCTGTAGTTTTTCCCCTTGAACTTGCCATGATGAAAGTTTTGGTATTTTTTCTGTTCCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

mRNA sequence

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

Coding sequence (CDS)

ATGGTGTGCCAAGCTGCAACCCAGACAAGATTTCGGGCATTGAAACATGAGAATGGAATTGCAGGAAAACCAACAATTATAGTTAGAGTGATCGCATGCTTTCAACCTTTGCAGAATTGTCAGGCTGAGTATTTTCGACATTTGCTTAAGCCTGTCACGTAG

Protein sequence

MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT

Homology

[Close]

BLAST of Cla97C10G192610 vs. NCBI nr
Match: XP_016901746.1 (PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43769.1 hypothetical protein Csa_7G066260 [Cucumis sativus])

HSP 1 Score: 112.5 bits (280), Expect = 4.5e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. NCBI nr
Match: EXB57311.1 (hypothetical protein L484_011398 [Morus notabilis])

HSP 1 Score: 111.7 bits (278), Expect = 7.7e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. NCBI nr
Match: KGN53735.1 (hypothetical protein Csa_4G113180 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. NCBI nr
Match: PON40251.1 (hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypothetical protein TorRG33x02_168420 [Trema orientalis])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAG+PTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. NCBI nr
Match: XP_016902954.1 (PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo])

HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQSCQAEYFRQLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TrEMBL
Match: tr|A0A1S4E0J3|A0A1S4E0J3_CUCME (uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TrEMBL
Match: tr|A0A0A0K458|A0A0A0K458_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.0e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIV+VIACFQPLQNCQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TrEMBL
Match: tr|W9R7U4|W9R7U4_9ROSA (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 5.1e-22
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAGKPTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGKPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TrEMBL
Match: tr|A0A2P5EP76|A0A2P5EP76_9ROSA (Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 50/53 (94.34%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAA+QTRFRALKHENGIAG+PTIIVRVIACFQPLQ+CQAEYFRHLLKPVT
Sbjct: 1  MVCQAASQTRFRALKHENGIAGRPTIIVRVIACFQPLQDCQAEYFRHLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TrEMBL
Match: tr|A0A0A0KVT2|A0A0A0KVT2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.1e-21
Identity = 51/53 (96.23%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQA+YFR LLKPVT
Sbjct: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAKYFRQLLKPVT 53

[Close]

BLAST of Cla97C10G192610 vs. TAIR10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37)

HSP 1 Score: 89.0 bits (219), Expect = 9.7e-19
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQ+A QTRFR LKHE+GI G   I+VRVIACFQPLQ+CQAEYFR LLKPVT
Sbjct: 1  MVCQSAGQTRFRTLKHEHGITG--NIVVRVIACFQPLQDCQAEYFRQLLKPVT 51

[Close]

BLAST of Cla97C10G192610 vs. TAIR10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43)

HSP 1 Score: 86.3 bits (212), Expect = 6.3e-18
Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHE-NGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MV Q+A QTRFR  K+E NG + +PTI+VRVIACFQP+ NCQAEYFRH+LKPVT
Sbjct: 1  MVSQSAGQTRFRTFKYENNGDSSRPTIVVRVIACFQPMDNCQAEYFRHILKPVT 54

[Close]

BLAST of Cla97C10G192610 vs. TAIR10
Match: AT5G64341.1 (conserved peptide upstream open reading frame 40)

HSP 1 Score: 81.6 bits (200), Expect = 1.6e-16
Identity = 36/53 (67.92%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MVCQAATQTRFRALKHENGIAGKPTIIVRVIACFQPLQNCQAEYFRHLLKPVT 54
          MVCQ+  +TRFR LK+E G A + TI+VRVI C+QP+ NCQAEYFR LLKPVT
Sbjct: 1  MVCQSPGKTRFRGLKYETGNANESTIVVRVIECYQPMDNCQAEYFRLLLKPVT 53

The following BLAST results are available for this feature:

BLAST of Cla97C10G192610 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016901746.1	4.5e-22	96.23	PREDICTED: uncharacterized protein LOC103495379 isoform X2 [Cucumis melo] >KGN43...	[more]
EXB57311.1	7.7e-22	96.23	hypothetical protein L484_011398 [Morus notabilis]	[more]
KGN53735.1	1.7e-21	96.23	hypothetical protein Csa_4G113180 [Cucumis sativus]	[more]
PON40251.1	1.7e-21	94.34	hypothetical protein PanWU01x14_298860 [Parasponia andersonii] >PON87350.1 hypot...	[more]
XP_016902954.1	2.2e-21	96.23	PREDICTED: uncharacterized protein LOC103501164 isoform X2 [Cucumis melo]	[more]

BLAST of Cla97C10G192610 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S4E0J3\|A0A1S4E0J3_CUCME	3.0e-22	96.23	uncharacterized protein LOC103495379 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
tr\|A0A0A0K458\|A0A0A0K458_CUCSA	3.0e-22	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066260 PE=4 SV=1	[more]
tr\|W9R7U4\|W9R7U4_9ROSA	5.1e-22	96.23	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_011398 PE=4 SV=1	[more]
tr\|A0A2P5EP76\|A0A2P5EP76_9ROSA	1.1e-21	94.34	Uncharacterized protein OS=Trema orientalis OX=63057 GN=TorRG33x02_168420 PE=4 S...	[more]
tr\|A0A0A0KVT2\|A0A0A0KVT2_CUCSA	1.1e-21	96.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G113180 PE=4 SV=1	[more]

BLAST of Cla97C10G192610 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C10G192610 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G50011.1	9.7e-19	79.25	conserved peptide upstream open reading frame 37	[more]
AT5G09461.1	6.3e-18	72.22	conserved peptide upstream open reading frame 43	[more]
AT5G64341.1	1.6e-16	67.92	conserved peptide upstream open reading frame 40	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C10G192610.1	Cla97C10G192610.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35281:SF1	CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 37-RELATED	coord: 1..53
None	No IPR available	PANTHER	PTHR35281	FAMILY NOT NAMED	coord: 1..53

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C10G192610	Cla001297	Watermelon (97103) v1	wmwmbB051
Cla97C10G192610	Csa4G113180	Cucumber (Chinese Long) v2	cuwmbB272
Cla97C10G192610	Csa7G066260	Cucumber (Chinese Long) v2	cuwmbB518
Cla97C10G192610	MELO3C018592	Melon (DHL92) v3.5.1	mewmbB174
Cla97C10G192610	CmoCh04G004230	Cucurbita moschata (Rifu)	cmowmbB694
Cla97C10G192610	CsGy7G005720	Cucumber (Gy14) v2	cgybwmbB491
Cla97C10G192610	CsGy4G009250	Cucumber (Gy14) v2	cgybwmbB261
Cla97C10G192610	Carg19732	Silver-seed gourd	carwmbB0302
Cla97C10G192610	Carg08072	Silver-seed gourd	carwmbB0392
Cla97C10G192610	CsaV3_7G007020	Cucumber (Chinese Long) v3	cucwmbB537

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C10G192610	Watermelon (97103) v2	wmbwmbB060
Cla97C10G192610	Silver-seed gourd	carwmbB0294
Cla97C10G192610	Silver-seed gourd	carwmbB0391
Cla97C10G192610	Cucumber (Gy14) v1	cgywmbB393
Cla97C10G192610	Cucurbita maxima (Rimu)	cmawmbB332
Cla97C10G192610	Cucurbita maxima (Rimu)	cmawmbB524
Cla97C10G192610	Cucurbita maxima (Rimu)	cmawmbB713
Cla97C10G192610	Cucurbita moschata (Rifu)	cmowmbB316
Cla97C10G192610	Cucurbita moschata (Rifu)	cmowmbB505
Cla97C10G192610	Melon (DHL92) v3.6.1	medwmbB457
Cla97C10G192610	Cucurbita moschata (Rifu)	cmowmbB684
Cla97C10G192610	Wild cucumber (PI 183967)	cpiwmbB279
Cla97C10G192610	Wild cucumber (PI 183967)	cpiwmbB542
Cla97C10G192610	Cucumber (Chinese Long) v3	cucwmbB274
Cla97C10G192610	Cucumber (Chinese Long) v2	cuwmbB277
Cla97C10G192610	Bottle gourd (USVL1VR-Ls)	lsiwmbB218
Cla97C10G192610	Melon (DHL92) v3.6.1	medwmbB160
Cla97C10G192610	Melon (DHL92) v3.5.1	mewmbB464
Cla97C10G192610	Watermelon (Charleston Gray)	wcgwmbB007
Cla97C10G192610	Watermelon (Charleston Gray)	wcgwmbB038
Cla97C10G192610	Wax gourd	wgowmbB001